Package | Description |
---|---|
Contains base Icy canvas and related classes
|
|
Contains common shared weak listener in Icy
|
|
Contains all file operation tools and related objects
|
|
Contains custom UI components for the Icy Sequence object
|
|
Contains all custom Dialog (modal frame)
|
|
Contains custom frames for Sequence action / selection...
|
|
Contains all classes and components related to the Icy inspector
|
|
Contains all graphic components related to the Icy LUT (Look Up Table)
|
|
Contains graphic components and objects for the main interface
|
|
Contains graphic components and objects related to the main (Ribbon) menu
|
|
Contains all Sequence related graphic components and tools
|
|
Contains all Sequence related graphic components tools
|
|
Contains all components and classes related to the Icy Viewer
|
|
Contains all ImageJ related stuff (wrapper, integration...)
|
|
Contains ITK library related stuff
|
|
Contains the main Icy class, responsible of the Icy application launch process (also contains the Icy version information)
|
|
Contains Icy Overlay / Painter structure definition and basics Overlay helper classes
|
|
Plugin abstract classes
|
|
Contains all ROI (Region Of Interest) related classes and tools
|
|
Contains Icy Sequence structure definition and associated objects / tools.
|
|
Contains common utilities classes (String, XLS, XML, ZIP, JAR, OME, Graphics, Date, Shape, Class...)
|
|
Contains all 2D ROI classes included in the kernel
|
|
Contains all 3D ROI classes included in the kernel
|
|
Contains all 4D ROI classes included in the kernel
|
|
Contains all 5D ROI classes included in the kernel
|
|
Modifier and Type | Method and Description |
---|---|
|
()
Deprecated.
Use instead.
|
|
(boolean canvasView)
Deprecated.
Use instead.
|
|
(boolean canvasView,
progressListener)
Return a sequence which contains rendered images.
|
|
(int imageType,
boolean canvasView)
Deprecated.
use instead
|
|
() |
Modifier and Type | Method and Description |
---|---|
(package private) void |
( g,
seq,
layer)
Draw specified image layer and others layers on specified object.
|
void |
( g,
sequence,
canvas) |
void |
( g,
sequence,
canvas) |
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
static |
( file)
Deprecated.
Use instead.
|
static |
([] files,
int serie,
boolean showProgress)
Load a sequence from the specified list of file and returns it.
|
static |
( file,
boolean showProgress)
Deprecated.
Use instead.
|
static |
( file,
int serie,
boolean showProgress)
Load a sequence from the specified file.
|
static |
(<File> files)
Deprecated.
Use instead.
|
static |
(<File> files,
boolean showProgress)
Deprecated.
Use instead.
|
static |
(<File> files,
boolean display,
boolean addToRecent)
Deprecated.
Use instead.
|
static [] |
([] files,
int[] series,
boolean separate,
boolean autoOrder,
boolean showProgress)
Load a list of sequence from the specified list of file and returns them.
|
(package private) static [] |
([] files,
int[] series,
boolean separate,
boolean autoOrder,
boolean directory,
boolean addToRecent,
boolean showProgress)
Loads the specified image files and return them as sequences.
|
static [] |
( file,
int[] series,
boolean showProgress)
Load a list of sequence from the specified multi serie image file returns it.
|
Modifier and Type | Method and Description |
---|---|
static <> |
( file,
<> series)
Deprecated.
Use instead.
|
static <> |
( file,
<> series,
boolean showProgress)
Deprecated.
Use instead.
|
static <> |
( file,
<> series,
boolean display,
boolean addToRecent)
Deprecated.
Use instead.
|
static <> |
(<File> files,
boolean separate)
Deprecated.
Use instead.
|
static <> |
(<File> files,
boolean separate,
boolean showProgress)
Deprecated.
Use instead.
|
static <> |
(<File> files,
boolean separate,
boolean display,
boolean addToRecent)
Deprecated.
Use instead.
|
static <> |
(<File> files,
<> series)
Deprecated.
Use instead.
|
static <> |
(<File> files,
<> series,
boolean separate)
Deprecated.
Use instead.
|
static <> |
(<File> files,
<> series,
boolean separate,
boolean showProgress)
Deprecated.
Use instead.
|
static <> |
(<File> files,
<> series,
boolean separate,
boolean autoOrder,
boolean showProgress)
Deprecated.
Use instead.
|
Modifier and Type | Method and Description |
---|---|
static void |
(loci.formats.IFormatWriter formatWriter,
sequence,
file,
int zMin,
int zMax,
int tMin,
int tMax,
int fps,
boolean multipleFile,
boolean showProgress)
Deprecated.
Use
instead.
|
static void |
(loci.formats.IFormatWriter formatWriter,
sequence,
file,
int zMin,
int zMax,
int tMin,
int tMax,
int fps,
boolean multipleFile,
boolean showProgress,
boolean addToRecent)
Save the specified sequence in the specified file.
|
static void |
( sequence,
file)
Save the specified sequence in the specified file.
|
static void |
( sequence,
file,
boolean multipleFiles)
Deprecated.
Use instead.
|
static void |
( sequence,
file,
boolean multipleFiles,
boolean showProgress)
Save the specified sequence in the specified file.
|
static void |
( sequence,
file,
int zMin,
int zMax,
int tMin,
int tMax,
int fps,
boolean multipleFiles)
Deprecated.
Use
instead.
|
static void |
( sequence,
file,
int zMin,
int zMax,
int tMin,
int tMax,
int fps,
boolean multipleFile,
boolean showProgress)
Save the specified sequence in the specified file.
|
Modifier and Type | Field and Description |
---|---|
protected |
|
protected |
internals
|
Modifier and Type | Method and Description |
---|---|
|
() |
|
() |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence)
Called when the sequence chooser selection changed for specified sequence.
|
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence)
Deprecated.
use instead
|
Constructor and Description |
---|
( sequence)
Image Saver Dialog
Display a dialog to select the destination file then save the specified sequence. |
( sequence,
boolean autoSave)
Image Saver Dialog
Display a dialog to select the destination file then save the specified sequence. |
( sequence,
int defZ,
int defT)
Image Saver Dialog
Display a dialog to select the destination file then save the specified sequence. |
( sequence,
int defZ,
int defT,
boolean autoSave)
Image Saver Dialog
Display a dialog to select the destination file then save the specified sequence. |
Modifier and Type | Field and Description |
---|---|
(package private) |
Deprecated.
input sequence
|
Modifier and Type | Method and Description |
---|---|
|
()
Deprecated.
|
|
()
Deprecated.
Use instead.
|
|
() |
|
() |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence) |
void |
( sequence)
Deprecated.
|
void |
( sequence) |
(package private) void |
( value)
Deprecated.
|
void |
( seq) |
void |
( seq) |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence) |
void |
( value) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
|
()
Deprecated.
|
Modifier and Type | Field and Description |
---|---|
(package private) |
|
Modifier and Type | Method and Description |
---|---|
|
() |
|
() |
|
()
Returns the current active sequence.
|
|
( overlay) |
|
( overlay) |
|
( overlay)
Returns the first active sequence containing the specified Overlay
|
|
( painter)
Deprecated.
|
|
( painter)
Deprecated.
|
|
( painter)
Deprecated.
Use instead.
|
|
( roi) |
|
( roi) |
|
( roi)
Returns the first active sequence containing the specified ROI
|
|
( painter)
Deprecated.
|
|
( painter)
Deprecated.
|
|
( painter)
Deprecated.
|
|
( roi)
Deprecated.
|
|
( roi) |
|
( roi)
Deprecated.
|
|
()
Deprecated.
|
|
() |
|
()
Deprecated.
Use instead.
|
Modifier and Type | Method and Description |
---|---|
<> |
() |
<> |
() |
<> |
()
Returns list of active sequence (displayed in a viewer)
|
<> |
( name) |
<> |
( name) |
<> |
( name)
Returns list of active sequence (displayed in a viewer) matching the specified name.
|
<> |
( overlay) |
<> |
( overlay) |
<> |
( overlay)
Returns all active sequence containing the specified Overlay
|
<> |
( painter)
Deprecated.
|
<> |
( painter)
Deprecated.
|
<> |
( painter)
Deprecated.
Use instead.
|
<> |
( roi) |
<> |
( roi) |
<> |
( roi)
Returns all active sequence containing the specified ROI
|
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence) |
void |
( sequence)
Open a viewer for the specified sequence.
|
void |
( sequence) |
void |
( sequence) |
void |
( sequence)
Close all viewers displaying the specified sequence.
|
void |
( sequence) |
void |
( sequence) |
void |
( sequence)
Deprecated.
Use instead.
|
void |
( sequence)
Deprecated.
The focus just changed to another sequence.
|
|
( sequence) |
|
( sequence) |
|
( sequence)
Returns first viewer attached to specified sequence
|
<> |
( sequence) |
<> |
( sequence) |
<> |
( sequence)
Returns viewers attached to specified sequence
|
boolean |
( sequence) |
boolean |
( sequence) |
boolean |
( sequence)
Returns true if specified sequence is currently opened (displayed in a viewer)
|
void |
( sequence)
Sequence just get the active state.
|
void |
( sequence)
Sequence was just closed (last viewer displaying the sequence just closed)
|
void |
( sequence)
Sequence just lost the active state.
|
void |
( sequence)
Sequence was just opened (first viewer displaying the sequence just opened)
|
Modifier and Type | Method and Description |
---|---|
|
( sequence,
dataType,
boolean scaled,
org.pushingpixels.flamingo.api.common.CommandToggleButtonGroup group) |
void |
( sequence) |
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
void |
( sequence) |
Constructor and Description |
---|
( sequence)
Create the panel.
|
( sequence) |
Modifier and Type | Field and Description |
---|---|
(package private) |
|
(package private) |
|
(package private) |
|
(package private) |
|
(package private) |
|
(package private) |
|
Modifier and Type | Method and Description |
---|---|
|
() |
|
() |
[] |
() |
Modifier and Type | Method and Description |
---|---|
(package private) boolean |
( seq,
boolean showMessage,
boolean showWarning) |
Constructor and Description |
---|
( sequence)
Create the panel.
|
( sequence) |
( sequence,
dim) |
( sequence) |
( sequence) |
( sequence,
dim) |
( sequence) |
( sequence,
int c) |
( sequence) |
( sequence,
int c) |
( sequence) |
( sequence) |
Modifier and Type | Field and Description |
---|---|
(package private) |
associated sequence
|
Modifier and Type | Method and Description |
---|---|
|
(boolean canvasView,
progressListener) |
|
() |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
Constructor and Description |
---|
( sequence) |
( sequence,
boolean visible) |
Modifier and Type | Method and Description |
---|---|
static |
(ij.ImagePlus image,
progressListener)
Convert the specified ImageJ
ImagePlus object to Icy . |
Modifier and Type | Method and Description |
---|---|
static ij.ImagePlus |
( sequence,
progressListener)
Convert the specified Icy object to ImageJ
ImagePlus . |
Modifier and Type | Method and Description |
---|---|
static |
(org.itk.simple.Image itkImg)
Convert the specified ITK image to ICY sequence.
|
Modifier and Type | Method and Description |
---|---|
static org.itk.simple.Image |
( sequence)
Convert the specified ICY sequence to ITK image.
|
Modifier and Type | Method and Description |
---|---|
static void |
( sequence)
Deprecated.
Uses
Icy.getMainInterface().addSequence(Sequence) instead. |
Modifier and Type | Method and Description |
---|---|
<> |
()
Returns all sequences where the overlay is currently attached.
|
<> |
()
Deprecated.
Returns all sequences where the painter/overlay is currently attached.
|
Modifier and Type | Method and Description |
---|---|
void |
( sequence)
Deprecated.
Use instead.
|
void |
( sequence)
Deprecated.
Use instead.
|
void |
( sequence)
Deprecated.
Use instead.
|
void |
( sequence)
Deprecated.
Use instead.
|
boolean |
( sequence)
Returns
true if the overlay is attached to the specified . |
boolean |
( sequence)
Deprecated.
Returns
true if the overlay is attached to the specified . |
void |
( g,
sequence,
canvas)
Deprecated.
|
void |
( g,
sequence,
canvas)
Deprecated.
Paint method called to draw the painter.
|
void |
( g,
sequence,
canvas) |
void |
( g,
sequence,
canvas)
Paint method called to draw the overlay.
|
void |
( g,
sequence,
canvas) |
void |
( g,
sequence,
canvas) |
Constructor and Description |
---|
( sequence)
Deprecated.
Uses the class instead.
|
( sequence)
Deprecated.
Use instead.
|
( sequence,
double x,
double y)
Deprecated.
Use instead.
|
( sequence,
double x,
double y,
color)
Deprecated.
Use instead.
|
( sequence,
double x,
double y,
color,
selectedColor)
Deprecated.
Use instead.
|
( sequence,
double x,
double y,
int ray)
Deprecated.
Use instead.
|
( sequence,
double x,
double y,
int ray,
color,
selectedColor)
Deprecated.
Use instead.
|
( sequence,
position)
Deprecated.
Use instead.
|
( sequence,
position,
color)
Deprecated.
Use instead.
|
( sequence,
position,
color,
selectedColor)
Deprecated.
Use instead.
|
( sequence,
position,
int ray)
Deprecated.
Use instead.
|
( sequence,
position,
int ray,
color)
Deprecated.
Use instead.
|
( sequence,
position,
int ray,
color,
selectedColor)
Deprecated.
Use instead.
|
( sequence,
double x1,
double y1,
double x2,
double y2,
double x3,
double y3,
int ray,
color,
selectedColor)
Deprecated.
Uses
instead.
|
Modifier and Type | Method and Description |
---|---|
|
() |
|
()
Deprecated.
Use instead
|
Modifier and Type | Method and Description |
---|---|
<> |
() |
Modifier and Type | Method and Description |
---|---|
void |
( sequence) |
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
|
()
Return first sequence where ROI is attached
|
Modifier and Type | Method and Description |
---|---|
<> |
()
Return sequences where ROI is attached
|
Modifier and Type | Method and Description |
---|---|
void |
( sequence)
Deprecated.
use instead
|
static |
( className,
seq,
imagePoint,
boolean creation)
Deprecated.
Use instead.
|
void |
( sequence)
Deprecated.
use instead
|
static |
( sequence,
roi)
Return area of the specified ROI.
|
static |
( sequence,
roi,
int roundSignificant)
Return area of the specified ROI.
|
static |
( sequence,
double contourPoints,
roi,
int dim,
int roundSignificant)
Returns the contour size for specified sequence and dimension from a given number of contour
points.
|
static |
( sequence,
roi,
int dim)
Returns the ROI contour size for specified sequence and dimension.
|
static |
( sequence,
roi,
int dim,
int roundSignificant)
Returns the ROI contour size for specified sequence and dimension.
|
static |
( sequence,
roi)
Returns the min, max, mean intensity for the specified sequence region.
|
static |
( sequence,
roi,
int z,
int t,
int c)
Computes and returns the min, max, mean intensity for the specified sequence region.
|
static |
( sequence,
double interiorPoints,
roi,
int dim,
int roundSignificant)
Returns the ROI interior size for specified sequence and dimension from a given number of
interior points.
|
static |
( sequence,
roi,
int dim)
Returns the ROI interior size for specified sequence and dimension.
|
static |
( sequence,
roi,
int dim,
int roundSignificant)
Returns the ROI interior size for specified sequence and dimension.
|
static double |
( sequence,
roi)
Returns the maximum pixel intensity contained in the ROI of specified sequence.
|
static double |
( sequence,
roi,
int z,
int t,
int c)
Returns the maximum pixel intensity contained in the ROI of specified sequence.
|
static double |
( sequence,
roi)
Returns the mean pixel intensity contained in the ROI of specified sequence.
|
static double |
( sequence,
roi,
int z,
int t,
int c)
Returns the mean pixel intensity contained in the ROI of specified sequence.
|
static double |
( sequence,
roi)
Returns the minimum pixel intensity contained in the ROI of specified sequence.
|
static double |
( sequence,
roi,
int z,
int t,
int c)
Returns the minimum pixel intensity contained in the ROI of specified sequence.
|
static long |
( sequence,
roi)
Returns the number of pixel contained in the ROI of specified sequence.
|
static long |
( sequence,
roi,
int z,
int t,
int c)
Returns the number of pixel contained in the ROI of specified sequence.
|
static |
( sequence,
roi)
Return perimeter of the specified ROI with the correct unit.
|
static |
( sequence,
roi,
int roundSignificant)
Return perimeter of the specified ROI with the correct unit.
|
static double |
( sequence,
roi,
int z,
int t,
int c)
Computes and returns the standard deviation for the specified sequence region.
|
static double |
( sequence,
roi)
Returns the sum of all pixel intensity contained in the ROI of specified sequence.
|
static double |
( sequence,
roi,
int z,
int t,
int c)
Returns the sum of all pixel intensity contained in the ROI of specified sequence.
|
static |
( sequence,
roi)
Return surface area of the specified ROI.
|
static |
( sequence,
roi,
int roundSignificant)
Return surface area of the specified ROI.
|
static |
( sequence,
roi)
Return volume of the specified ROI.
|
static |
( sequence,
roi,
int roundSignificant)
Return volume of the specified ROI.
|
boolean |
( sequence)
Return true is this ROI is attached to at least one sequence
|
Modifier and Type | Field and Description |
---|---|
(package private) |
|
(package private) |
|
(package private) |
|
(package private) |
|
(package private) |
|
protected |
|
Modifier and Type | Method and Description |
---|---|
static |
([] sequences)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences,
boolean fillEmpty,
boolean rescale)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences,
int[] channels,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static |
([] sequences)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
|
( dataType,
boolean rescale)
Deprecated.
Use instead.
|
|
( dataType,
scaler)
Deprecated.
Use instead.
|
|
(int dataType,
boolean signed,
boolean rescale)
Deprecated.
Use instead
|
static |
( source,
dataType,
boolean rescale)
Converts the source sequence to the specified data type.
|
static |
( source,
dataType,
boolean rescale,
boolean useDataBounds)
Converts the source sequence to the specified data type.
|
static |
( source,
dataType,
scaler)
Converts the source sequence to the specified data type.
|
|
(int bandNumber)
Deprecated.
Use instead
|
|
(<Integer> bandNumbers)
Deprecated.
Use instead
|
|
(int channelNumber)
Deprecated.
Use instead.
|
static |
( source,
int channel)
Build a new single channel sequence (grey) from the specified channel of the source sequence.
|
|
(<Integer> channelNumbers)
Deprecated.
Use instead.
|
static |
( source,
int... channels)
Build a new sequence by extracting the specified channels from the source sequence.
|
static |
( source,
<> channels)
Deprecated.
Use instead.
|
static |
( source,
int t)
Build a new sequence by extracting the specified T frame from the source sequence.
|
static |
( source,
int z)
Build a new sequence by extracting the specified Z slice from the source sequence.
|
|
()
Deprecated.
Use instead.
|
static |
( source)
Creates and return a copy of the sequence.
|
|
()
Return the output sequence
|
|
() |
|
(int startX,
int startY,
int startZ,
int startT,
int sizeX,
int sizeY,
int sizeZ,
int sizeT)
Deprecated.
Uses
instead.
|
static |
( source,
int startX,
int startY,
int startZ,
int startT,
int sizeX,
int sizeY,
int sizeZ,
int sizeT)
Deprecated.
Use
instead.
|
static |
( source,
int startX,
int startY,
int startC,
int startZ,
int startT,
int sizeX,
int sizeY,
int sizeC,
int sizeZ,
int sizeT)
Deprecated.
Use
instead.
|
static |
( source,
region)
Creates a new sequence from the specified region of the source sequence.
|
static |
( source,
roi)
Creates a new sequence which is a sub part of the source sequence defined by the specified
.
|
static |
( source,
int width,
int height)
Return a copy of the sequence with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign)
Return a copy of the sequence with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign,
filterType)
Return a copy of the source sequence with specified size, alignment rules and filter type.
|
static |
( source,
int width,
int height,
filterType)
Return a copy of the sequence with specified size.
|
Modifier and Type | Method and Description |
---|---|
static void |
( sequence,
int num)
Add one or severals frames at position t.
|
static void |
( sequence,
int num,
boolean copyLast)
Add one or severals frames at position t.
|
static void |
( sequence,
int t,
int num)
Add one or severals frames at position t.
|
static void |
( sequence,
int t,
int num,
int copyLast)
Add one or severals frames at position t.
|
static void |
( sequence,
int num)
Add one or severals slices at position z.
|
static void |
( sequence,
int num,
boolean copyLast)
Add one or severals slices at position z.
|
static void |
( sequence,
int z,
int num)
Add one or severals slices at position z.
|
static void |
( sequence,
int z,
int num,
int copyLast)
Add one or severals slices at position z.
|
static void |
( sequence,
int newSizeZ,
int newSizeT,
boolean reverseOrder)
Adjust Z and T dimension of the sequence.
|
static |
([] sequences)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences,
boolean fillEmpty,
boolean rescale)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences,
int[] channels,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static |
([] sequences)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static |
([] sequences)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
static |
([] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale,
pl)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
static void |
( sequence)
Set all images of the sequence in T dimension.
|
static |
( source,
dataType,
boolean rescale)
Converts the source sequence to the specified data type.
|
static |
( source,
dataType,
boolean rescale,
boolean useDataBounds)
Converts the source sequence to the specified data type.
|
static |
( source,
dataType,
scaler)
Converts the source sequence to the specified data type.
|
static void |
( sequence)
Set all images of the sequence in Z dimension.
|
static |
( source,
int channel)
Build a new single channel sequence (grey) from the specified channel of the source sequence.
|
static |
( source,
int... channels)
Build a new sequence by extracting the specified channels from the source sequence.
|
static |
( source,
<> channels)
Deprecated.
Use instead.
|
static |
( source,
int t)
Build a new sequence by extracting the specified T frame from the source sequence.
|
static |
( source,
int z)
Build a new sequence by extracting the specified Z slice from the source sequence.
|
static loci.formats.ome.OMEXMLMetadata |
( sequence,
boolean separateChannel)
Generates Meta Data for the given Sequence.
|
static loci.formats.ome.OMEXMLMetadata |
( sequence,
boolean useZ,
boolean useT,
boolean separateChannel)
Generates Meta Data for the given Sequence and parameters.
|
static loci.formats.ome.OMEXMLMetadata |
( sequence,
int sizeZ,
int sizeT,
boolean separateChannel)
Generates Meta Data for the given Sequence and parameters.
|
static |
( source)
Creates and return a copy of the sequence.
|
static |
( sequence,
int t,
int z,
int insertPosition,
int numInsert,
int copyLast) |
static |
( sequence,
int t,
int z,
int insertPosition,
int numInsert,
int copyLast) |
static |
([] sequences,
int[] channels,
int sizeX,
int sizeY,
int t,
int z,
boolean fillEmpty,
boolean rescale) |
static |
([] sequences,
int sizeX,
int sizeY,
int sizeC,
int t,
int z,
boolean interlaced,
boolean fillEmpty,
boolean rescale) |
static |
([] sequences,
int sizeX,
int sizeY,
int sizeC,
int t,
int z,
boolean interlaced,
boolean fillEmpty,
boolean rescale) |
static |
( sequence,
int t,
int z,
int newSizeZ,
int newSizeT,
boolean reverseOrder) |
static int |
([] sequences,
dim)
Returns the max size of specified dimension for the given sequences.
|
static |
( source,
int startX,
int startY,
int startZ,
int startT,
int sizeX,
int sizeY,
int sizeZ,
int sizeT)
Deprecated.
Use
instead.
|
static |
( source,
int startX,
int startY,
int startC,
int startZ,
int startT,
int sizeX,
int sizeY,
int sizeC,
int sizeZ,
int sizeT)
Deprecated.
Use
instead.
|
static |
( source,
region)
Creates a new sequence from the specified region of the source sequence.
|
static |
( source,
roi)
Creates a new sequence which is a sub part of the source sequence defined by the specified
.
|
static void |
( sequence,
int t,
int newT)
Modify frame position.
|
static void |
( sequence,
int from,
int to,
int offset)
Modify T position of a range of frame by the specified offset
|
static void |
( sequence,
int z,
int newZ)
Modify slice position.
|
static void |
( sequence,
int from,
int to,
int offset)
Modify Z position of a range of slice by the specified offset
|
static void |
( source,
int channel)
Remove the specified channel from the source sequence.
|
static void |
( sequence,
int t)
Remove a frame at position t.
|
static void |
( sequence,
int t)
Remove a frame at position t and shift all the further t by -1.
|
static void |
( sequence,
int z)
Remove a slice at position Z.
|
static void |
( sequence,
int z)
Remove a slice at position t and shift all the further t by -1.
|
static void |
( sequence)
Reverse T frames order.
|
static void |
( sequence)
Reverse Z slices order.
|
static |
( source,
int width,
int height)
Return a copy of the sequence with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign)
Return a copy of the sequence with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign,
filterType)
Return a copy of the source sequence with specified size, alignment rules and filter type.
|
static |
( source,
int width,
int height,
filterType)
Return a copy of the sequence with specified size.
|
void |
( sequence) |
void |
( sequence)
Called when sequence has been closed (all viewers displaying it closed).
|
void |
( sequence) |
static void |
( sequence,
int t1,
int t2)
Exchange 2 frames position on the sequence.
|
static void |
( sequence,
int z1,
int z2)
Exchange 2 slices position on the sequence.
|
Constructor and Description |
---|
(int sizeX,
int sizeY,
int sizeZ,
int sizeT,
int sizeC,
dataType,
target)
If non-null, the 'target' argument will be used to store the result of the
sequence building process, and no new sequence will be created.
|
( sequence)
Create a new SequenceData iterator to iterate all data.
|
( sequence,
int z,
int t,
int c)
Create a new SequenceData iterator to iterate data of specified channel.
|
( sequence,
int startX,
int endX,
int startY,
int endY,
int c,
int z,
int t)
Deprecated.
Use instead
|
( sequence,
int startX,
int endX,
int startY,
int endY,
int startC,
int endC,
int startZ,
int endZ,
int startT,
int endT)
Deprecated.
Use instead
|
( sequence,
bounds5D)
Create a new SequenceData iterator to iterate data through the specified 5D region
(inclusive).
|
( sequence,
XYBounds,
int z,
int t,
int c)
Create a new SequenceData iterator to iterate data through the specified dimensions
(inclusive).
|
( sequence,
roi)
Create a new SequenceData iterator to iterate data through the specified ROI.
|
( sequence,
roi,
boolean inclusive)
Create a new SequenceData iterator to iterate data through the specified ROI.
|
( sequence,
roi,
boolean inclusive,
int z,
int t,
int c)
Create a new SequenceData iterator to iterate data through the specified ROI.
|
( sequence,
source) |
( sequence,
<> source) |
( sequence,
source) |
( sequence,
<> source) |
( sequence,
sourceType) |
( sequence,
sourceType,
source) |
( sequence,
sourceType,
source,
int param) |
( sequence,
sourceType,
source,
type) |
( sequence,
sourceType,
source,
type,
int param) |
( sequence,
sourceType,
type) |
( sequence) |
( seq) |
Modifier and Type | Method and Description |
---|---|
static loci.formats.ome.OMEXMLMetadata |
( sequence,
boolean separateChannel)
Deprecated.
Use instead.
|
static loci.formats.ome.OMEXMLMetadata |
( sequence,
boolean useZ,
boolean useT,
boolean separateChannel)
Deprecated.
Use
instead.
|
static loci.formats.ome.OMEXMLMetadata |
( sequence,
int sizeZ,
int sizeT,
boolean separateChannel)
Deprecated.
Use instead.
|
Modifier and Type | Method and Description |
---|---|
protected void |
( g,
sequence,
canvas)
Draw extras informations as name, size and position
|
protected void |
( g,
sequence,
canvas)
Draw the ROI itself
|
protected void |
( g,
sequence,
canvas) |
protected void |
( g,
sequence,
canvas)
Draw the ROI itself
|
void |
( g,
sequence,
canvas) |
void |
( g,
sequence,
canvas) |
Modifier and Type | Method and Description |
---|---|
void |
( g,
sequence,
canvas) |
Modifier and Type | Method and Description |
---|---|
void |
( g,
sequence,
canvas) |
Modifier and Type | Method and Description |
---|---|
void |
( g,
sequence,
canvas) |
Modifier and Type | Method and Description |
---|---|
void |
( g,
sequence,
canvas) |
void |
( g,
sequence,
canvas) |
Modifier and Type | Method and Description |
---|---|
(package private) void |
( line,
g,
sequence,
canvas) |
void |
( g,
sequence,
canvas) |
void |
( sequence) |
Modifier and Type | Method and Description |
---|---|
void |
( g,
sequence,
canvas) |
void |
( g,
sequence,
canvas) |