Package | Description |
---|---|
Contains base Icy canvas and related classes
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Contains all file operation tools and related objects
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Contains graphic components and objects for the main interface
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Contains all components and classes related to the Icy Viewer
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Contains all Image related stuff as the Icy image data structure, ColorModel, ColorSpace, ColorMap, Image tools...
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Plugin abstract classes
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All supported plugin interface to specialize plugin in a specific task (Canvas, ROI, file importer...)
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Contains Icy Sequence structure definition and associated objects / tools.
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Contains common utilities classes (String, XLS, XML, ZIP, JAR, OME, Graphics, Date, Shape, Class...)
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Modifier and Type | Method and Description |
---|---|
|
()
Get the current image.
|
|
(int t,
int z)
Deprecated.
Use with C = -1 instead.
|
|
(int t,
int z,
int c)
Gets the image at position (t, z, c).
|
Modifier and Type | Method and Description |
---|---|
protected void |
( image,
type)
sequence data has changed
|
protected void |
( image,
type) |
protected void |
( image,
type) |
Modifier and Type | Method and Description |
---|---|
static |
( file)
Load and return a single image from the specified file.
|
static |
( file,
int z,
int t)
Load and return the image at given position from the specified file.
|
static |
(loci.formats.IFormatReader reader)
Load and return a single image from the specified reader.
|
static |
(loci.formats.IFormatReader reader,
int z,
int t)
Load and return the image at given position from the specified reader.
|
Modifier and Type | Method and Description |
---|---|
static void |
( image,
file,
boolean force)
Save a single image to the specified file
|
Modifier and Type | Method and Description |
---|---|
|
() |
|
() |
|
()
Returns the current active image.
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|
()
Deprecated.
|
|
() |
|
()
Deprecated.
Use instead.
|
Modifier and Type | Method and Description |
---|---|
|
()
Get the current image
|
|
(int t,
int z)
Deprecated.
Use with C = -1 instead.
|
|
(int t,
int z,
int c)
Delegation for
|
Modifier and Type | Field and Description |
---|---|
protected |
|
Modifier and Type | Method and Description |
---|---|
static |
( source)
Add an empty channel to the specified image and return result as a new image.
|
static |
( source,
int index)
Add an empty channel to the specified image and return result as a new image.
|
static |
( source,
int index,
int num)
Add empty channel(s) to the specified image and return result as a new image.
|
static |
( image)
Deprecated.
use instead
|
static |
(<BufferedImage> imageList)
Deprecated.
use instead
|
|
( dataType,
boolean rescale)
Deprecated.
Uses
instead.
|
|
( dataType,
scaler)
Deprecated.
Uses
instead.
|
static |
( source,
dataType,
boolean rescale)
Convert the source image to the specified data type.
|
static |
( source,
dataType,
boolean rescale,
boolean useDataBounds)
Convert the source image to the specified data type.
|
static |
( source,
dataType,
scaler)
Convert the source image to the specified data type.
|
|
(int dataType,
boolean signed,
boolean rescale)
Deprecated.
Uses
instead
|
|
(int dataType,
boolean signed,
scaler)
Deprecated.
Uses
instead
|
static |
(loci.formats.IFormatReader reader,
int z,
int t)
Load a thumbnail version of the image located at (Z, T) position from the specified
IFormatReader and returns it as an IcyBufferedImage. |
static |
(int width,
int height,
cm)
Deprecated.
Use instead.
|
static |
(loci.formats.IFormatReader reader,
int z,
int t)
Load the image located at (Z, T) position from the specified IFormatReader
and return it as an IcyBufferedImage (old method). |
static |
( image)
Create an IcyBufferedImage from a BufferedImage.
|
static |
(loci.formats.IFormatReader reader,
int z,
int t)
Load the image located at (Z, T) position from the specified
IFormatReader and returns it as an IcyBufferedImage. |
static |
(loci.formats.IFormatReader reader,
int x,
int y,
int w,
int h,
int c,
int z,
int t)
Load a single channel sub image at (Z, T) position from the specified
IFormatReader and returns it as an IcyBufferedImage. |
static |
(<? extends BufferedImage> imageList)
Create an IcyBufferedImage (multi component) from a list of BufferedImage.
|
static |
(loci.formats.IFormatReader reader,
int z,
int t)
Load a thumbnail version of the image located at (Z, T) position from the specified
IFormatReader and returns it as an IcyBufferedImage. |
|
(int bandNumber)
Deprecated.
Use instead
|
|
(<Integer> bandNumbers)
Deprecated.
Use instead
|
static |
( source,
int channel)
Build a new single channel image (greyscale) from the specified source image channel.
|
|
(int channelNumber)
Deprecated.
Use instead.
|
static |
( source,
int... channels)
Build a new image from the specified source image channels.
|
static |
( source,
<> channelNumbers)
Deprecated.
Use instead.
|
|
(<Integer> channelNumbers)
Deprecated.
Use instead.
|
|
()
Deprecated.
Use instead
|
static |
( source)
Create a copy of the specified image.
|
|
() |
|
(int c)
Return a single component image corresponding to the component c of current image.
|
|
(int width,
int height)
Deprecated.
Use instead.
|
|
(int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign)
Deprecated.
Uses
instead.
|
|
(int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign,
filterType)
Deprecated.
Uses
instead.
|
|
(int width,
int height,
filterType)
Deprecated.
Uses
instead.
|
static |
( source,
int x,
int y,
int w,
int h)
Creates a new image which is a sub part of the source image from the specified
coordinates and dimensions.
|
static |
( source,
int x,
int y,
int c,
int sizeX,
int sizeY,
int sizeC)
Deprecated.
Use instead.
|
static |
( source,
region,
int c,
int sizeC)
Creates a new image from the specified region of the source image.
|
|
(int x,
int y,
int w,
int h)
Deprecated.
|
|
(int x,
int y,
int w,
int h)
Deprecated.
Uses
instead
|
static |
( source,
int width,
int height)
Return a copy of the image with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign)
Return a copy of the image with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign,
filterType)
Return a copy of the source image with specified size, alignment rules and filter type.
|
static |
( source,
int width,
int height,
filterType)
Return a copy of the image with specified size
|
static |
( image)
Deprecated.
Use instead.
|
static |
(<BufferedImage> images)
Deprecated.
Use instead.
|
Modifier and Type | Method and Description |
---|---|
static |
( source)
Add an empty channel to the specified image and return result as a new image.
|
static |
( source,
int index)
Add an empty channel to the specified image and return result as a new image.
|
static |
( source,
int index,
int num)
Add empty channel(s) to the specified image and return result as a new image.
|
(package private) |
( image,
lut,
out) |
static |
( source,
dataType,
boolean rescale)
Convert the source image to the specified data type.
|
static |
( source,
dataType,
boolean rescale,
boolean useDataBounds)
Convert the source image to the specified data type.
|
static |
( source,
dataType,
scaler)
Convert the source image to the specified data type.
|
void |
( srcImage,
srcRect,
dstPt)
Copy data from an image (notify data changed)
|
void |
( srcImage,
srcRect,
dstPt,
int srcChannel,
int dstChannel)
Copy data from an image (notify data changed)
|
static |
( source,
int channel)
Build a new single channel image (greyscale) from the specified source image channel.
|
static |
( source,
int... channels)
Build a new image from the specified source image channels.
|
static |
( source,
<> channelNumbers)
Deprecated.
Use instead.
|
static |
( source)
Convert the current into a ARGB .
|
static |
( source,
dest)
Draw the source into the destination ARGB
If dest is null then a new ARGB is returned. |
static |
( source,
lut)
Convert the current into a ARGB .
|
static |
( source,
lut,
dest)
Draw the source into the destination ARGB
If dest is null then a new ARGB is returned. |
static |
( source)
Create a copy of the specified image.
|
static |
( source,
int x,
int y,
int w,
int h)
Creates a new image which is a sub part of the source image from the specified
coordinates and dimensions.
|
static |
( source,
int x,
int y,
int c,
int sizeX,
int sizeY,
int sizeC)
Deprecated.
Use instead.
|
static |
( source,
region,
int c,
int sizeC)
Creates a new image from the specified region of the source image.
|
static |
( source,
int width,
int height)
Return a copy of the image with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign)
Return a copy of the image with specified size.
|
static |
( source,
int width,
int height,
boolean resizeContent,
int xAlign,
int yAlign,
filterType)
Return a copy of the source image with specified size, alignment rules and filter type.
|
static |
( source,
int width,
int height,
filterType)
Return a copy of the image with specified size
|
static |
( source,
dest)
Draw the source into the destination
If dest is null then a new TYPE_INT_ARGB is returned. |
static |
( source,
dest,
lut)
Draw the source into the destination
If dest is null then a new TYPE_INT_ARGB is returned. |
static |
( source,
int imageType,
lut)
Convert the current into a of the specified
type.
|
static void |
( source,
int dx,
int dy)
Translate image internal data (all channels) by the specified (x,y) vector.
|
static void |
( source,
int dx,
int dy,
int channel)
Translate image internal data of specified channel by the specified (x,y) vector.
|
Constructor and Description |
---|
( image,
type) |
( image,
type,
int param) |
( image)
Deprecated.
Use instead.
The ImageDataIterator iterate only on single channel data. |
( image,
maskXY)
Deprecated.
Use instead
|
( image,
maskXY,
int channel)
Create a new ImageData iterator to iterate data through the specified
BooleanMask2D and C dimension. |
( image,
int c)
Create a new ImageData iterator to iterate data of specified channel.
|
( image,
int startX,
int endX,
int startY,
int endY,
int c)
Deprecated.
Use instead.
|
( image,
int startX,
int endX,
int startY,
int endY,
int startC,
int endC)
Deprecated.
Use instead.
|
( image,
XYBounds,
int channel)
Create a new ImageData iterator to iterate data through the specified XY region and channel.
|
( image,
roi)
Deprecated.
Use instead.
You can use the method to
retrieve the boolean mask from the ROI.
|
Modifier and Type | Method and Description |
---|---|
|
() |
|
()
Deprecated.
Use instead
|
Modifier and Type | Method and Description |
---|---|
|
( icyBufferedImage)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
|
( icyBufferedImage)
Deprecated.
|
Modifier and Type | Field and Description |
---|---|
(package private) <,IcyBufferedImage> |
|
Modifier and Type | Method and Description |
---|---|
static |
( sequence,
int t,
int z,
int insertPosition,
int numInsert,
int copyLast) |
static |
( sequence,
int t,
int z,
int insertPosition,
int numInsert,
int copyLast) |
|
()
Return the first image
|
|
()
Returns the first image of first VolumetricImage
|
|
()
Returns the first non null image if exist
|
|
(int z)
Return image at position z
|
|
(int t,
int z)
Returns image at time t and depth z
|
|
(int t,
int z,
int c)
Returns a single component image corresponding to the component c of the image
at time t and depth z.
|
static |
([] sequences,
int[] channels,
int sizeX,
int sizeY,
int t,
int z,
boolean fillEmpty,
boolean rescale) |
static |
([] sequences,
int sizeX,
int sizeY,
int sizeC,
int t,
int z,
boolean interlaced,
boolean fillEmpty,
boolean rescale) |
static |
([] sequences,
int sizeX,
int sizeY,
int sizeC,
int t,
int z,
boolean interlaced,
boolean fillEmpty,
boolean rescale) |
static |
( sequence,
int t,
int z,
int newSizeZ,
int newSizeT,
boolean reverseOrder) |
|
()
Return the last image
|
|
()
Returns the last image of last VolumetricImage
|
|
(int t)
Returns the last image of VolumetricImage[t]
|
Modifier and Type | Method and Description |
---|---|
<> |
()
Return all images of volume image
|
<> |
()
Returns all images of sequence
|
<,IcyBufferedImage> |
()
Return all images of volume image as TreeMap (contains z position)
|
<> |
(int t)
Returns all images at specified t position
|
Modifier and Type | Method and Description |
---|---|
static loci.formats.ome.OMEXMLMetadata |
( image,
boolean separateChannel)
Generates Meta Data for the given BufferedImage.
|
boolean |
( image)
Test if the specified image is compatible with current loaded images in sequence
|
void |
( image)
Do common job on "image add" here
|
void |
( image)
Do common job on "image remove" here
|
void |
( oldImage,
newImage)
Do common job on "image replaced" here
|
void |
(int z,
image)
Set an image at the specified position
|
Constructor and Description |
---|
( image)
Creates a sequence containing the specified image.
|
( name,
image)
Creates a sequence with specified name and containing the specified image
|
Modifier and Type | Method and Description |
---|---|
static loci.formats.ome.OMEXMLMetadata |
( image,
boolean separateChannel)
Deprecated.
Use instead.
|