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Protocol List

Current number of protocols: 10

b
  • Batch spot detection with custom output
    • Complete detection protocol with 3 outputs: excel, binary, and detection screenshot
    c
  • Colocalizer
    • Display detections performed in 2 channels and colocalized detection.
  • Copy selected ROI to new sequence
    • This protocol duplicates the input sequence as well as the ROI that are selected by the user
  • Crop sequence to ROI
    • This protocol crops the input sequence to the bounding box of each ROI (thus producing a list of cropped seque...
    e
  • Extract channels
    • Extract channels from a sequence to display or process them individually
    g
  • Gaussian Filtering
    • This protocol performs a smooth on the image.
    m
  • Median filter via ImageJ
    • Perform a median filter on the active sequence using the ImageJ rank filter plugin, and convert the result bac...
    o
  • Optical Flow
    • This protocol computes the optical flow of a 2D+T sequence. The results are displayed with flow arrows pain...
    s
  • Spot detection with wavelets
    • This is the first protocol with spot detection for test purposes.
    t
  • Track cell intensity
    • Tracks a cell in a 2D video using active contours, and produces a list of ROI where intensity is measured and ...