Need help or advice ? Come to the Icy club ! - Every other Thursday morning from 9h30 to 12h30 - Francois Jacob Building - Main hall - Pasteur
Register

Associated publications

Don't forget the authors !
If you use this plugin, please cite it in your publication !

User reviews

(1)
5 star
1
4 star
0
3 star
0
2 star
0
1 star
0
average rating: 5


Please log-in to post a review
Deci
26 Apr 2013 10:45

Active Cells SDK

by Biomedical Imaging Group

This is an icy package that encapsulates tools to design and implement parametric active contours. The package provides fast 2D and 3D filters for image preprocessing, and a framework to create and evolve snakes defined by a set of control points.

Publication Id
ICY-W4S3B7
See technical details
View complete changelog

Documentation

Active contours constitute a computationally attractive framework for image segmentation.

References

Applications

V. Uhlmann, P. Ramdya, R. Delgado-Gonzalo, R. Benton, M. Unser, "FlyLimbTracker: An Active Contour Based Approach for Leg Segment Tracking in Unmarked, Freely Behaving Drosophila," PLoS ONE, vol. 12, no. 4, pp. 1-21, April 28, 2017.

D. Schmitter, R. Delgado-Gonzalo, G. Krueger, M. Unser, "Atlas-Free Brain Segmentation in 3D Proton-Density-Like MRI Images," Proc. IEEE ISBI'14, Beijing, China, April 29-May 2, 2014, pp. 629-632.

P.O. Michel, R. Delgado-Gonzalo, M. Hubert, L. Baldi, D.L. Hacker, M. Unser, F.M. Wurm, "Assessment of Chromosomal Length Variation in CHO Cells," Proc. Euro. Soc. Animal Cell Tech.'13, Lille, France, June 23-26, 2013, pp. 206.

P.O. Michel, R. Delgado-Gonzalo, M. Hubert, L. Baldi, D.L. Hacker, M. Unser, F.M. Wurm, "Assessment of Chromosomal Size Variation in CHO Cells," Proc. MipTec BioValley Life Sci. Week'12, Basel, Switzerland, September 24-27, 2012, paper no. P181, pp. 117.

Framework

V. Uhlmann, R. Delgado-Gonzalo, M. Unser, "Snakes with Tangent-Based Control and Energies for Bioimage Analysis," Proc. IEEE ISBI'14, Beijing, China, April 29-May 2, 2014, pp. 806-809.

R. Delgado-Gonzalo, V. Uhlmann, D. Schmitter, M. Unser, "Snakes on a Plane: A Perfect Snap for Bioimage Analysis," IEEE Signal Processing Magazine, vol. 32, no. 1, pp. 41-48, January 2015.

R. Delgado-Gonzalo, N. Chenouard, M. Unser, "Spline-Based Deforming Ellipsoids for Interactive 3D Bioimage Segmentation," IEEE Transactions on Image Processing, vol. 22, no. 10, pp. 3926-3940, October 2013.

R. Delgado-Gonzalo, M. Unser, "Spline-Based Framework for Interactive Segmentation in Biomedical Imaging," IRBM—Ingénierie et Recherche Biomédicale / BioMedical Engineering and Research, , vol. 34, no. 3, pp. 235-243, June 2013.

R. Delgado Gonzalo, "Segmentation and Tracking in High-Throughput Bioimaging," Swiss Federal Institute of Technology Lausanne, EPFL Thesis no. 5657 (2013), 186 p., March 15, 2013.

R. Delgado-Gonzalo, N. Chenouard, M. Unser, "Fast Parametric Snakes for 3D Microscopy," Proc. IEEE ISBI'12, Barcelona, Spain, May 2-5, 2012.

R. Delgado-Gonzalo, P. Thévenaz, C.S. Seelamantula, M. Unser, "Snakes with an Ellipse-Reproducing Property," IEEE Transactions on Image Processing, vol. 21, no. 3, pp. 1258-1271, March 2012.

R. Delgado-Gonzalo, P. Thévenaz, M. Unser, "Exponential Splines and Minimal-Support Bases for Curve Representation," Computer Aided Geometric Design, vol. 29, no. 2, pp. 109-128, February 2012.