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PKU
22 Sep 2014 16:33
Fabrice de Chaumont
05 Mar 2013 17:36
Useful

Histogram

by Yoann Le Montagner

Compute and display the histogram of a sequence, with a more accurate control on the histogram parameters (such as the number of bins) than the built-in Icy widget. In particular, the histogram can be computed either over a whole sequence or over a sub-region defined by a ROI.

Publication Id
ICY-P1B8R1
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Documentation

Histogram screenshotThis plugin provides a convenient interface to compute and visualize sequence histograms. Compared the built-in Icy histogram module, it offers a more accurate control on the parameters that are used to generate the histogram, such as:

  • the number of bins,
  • the center of the lower and upper bins,
  • the area of the sequence taken into account: the histogram can be computed over the whole sequence or only over a sub-area defined by a ROI.

These features are also available within the protocol framework provided by the Blocks plugin.