Design your own bioimage analysis workflow, graphically, and automate it on many images (batch processing). No programm [..]
Intensity projection along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, satu [..]
Automatically segment the boundary of a nucleus or cell starting from an approximate ROI. It supports 2D and 3D processi [..]
Browse files in directories with thumbnails view
The track manager enables the use of DSP-like trackProcessors. This can affect the display of tracks, selection in time [..]
Extract image features based on one or more intensity thresholds, and output the result as a labeled image or as a region of interest.
Track manager plug-in measuring motion statistics in 2D/3D, including min/max/avg/total displacement (absolute & rel [..]
View 3D data in three orientations simultaneously (XY, YZ, XZ)
This plug-in implements fast active contours for image segmentation. Their representation in terms of spline curves allo [..]
Display the colormap over the image using an overlay. Some settings are available as position, scale and labels…
The swiss army knife of plugin developers. Automatically generates elegant graphical interfaces with rich and intuitive [..]
This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works [..]
Ads a magnifier on top of the default 2D viewer to zoom in and inspect individual pixel values
Like to do things old-school? Track your objects manually, the Icy way!
Manually explore 4D sequence to find the best z of interest, and construct the result sequence.
This plugin reloads all plugins without restarting Icy. It is especially useful when changes are happening in the code o [..]
Align multidimensional images in 2D or 3D, rigidly or with warping, whatever the difference in scale. Provide also a set [..]
Track Manager plugin that displays available tracks on the selected sequence, in both 2D and 3D viewers, with various vi [..]
The plug-in is developed using a segmentation algorithm based on the Potts model. The user can segment an image, merge t [..]
Enhances the global contrast by equalizing the histogram. This plugin transforms pixel intensities so that they are [..]
This is an icy plug-in that implements a stereo vision system. Renders 3D stacks simulating a dual view camera. Each 3D [..]
The adaptive histogram equalization implements the Contrast-Limited Adaptive Histogram Equalization (CLAHE) for 2D, 3D o [..]
This plugin computes a displacement map from a sequence of at least two consecutive images.
Edge detection by Deriche's method.
Software Development Kit for the ‘Protocols’ programming environment. This plugin has been merged into ̵ [..]
Execute some simple math operations on sequences, such as addition, product, absolute value extraction, rounding to the [..]
Low-level functions for interactive communication between Icy and Matlab. To use this plugin, you have to configure y [..]
This plug-in implements fast active surfaces for 3D image segmentation. Their representation in terms of spline surfaces [..]
Colocalizer block. See colocalization protocol.
Icy Feature Detector plug-in implements a series of optimized contour and ridge detectors. The filters are steerable and [..]