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Intensity threshold to ROI (batch)

by adufour / Alexandre Dufour

This protocol uses a "folder loop" block to read every tif file in the specified folder and run an automated threshold algorithm on the first channel. The output is stored as ROI in the metadata alongside the original file.

version 2 (last version):

Download to use and modify in Icy. How do I use protocols ? A Problem ? ask the community.
Changelog for this version: - Replaced simple threshold by HK-Means - Output results to a spreadsheet with same name as the original image file

This protocol has no documentation. A Problem ? ask the community.


Previous versions:


version 1:

Download to use and modify in Icy.
Changelog for this version: initial version


Icy protocol publication Id : D6P7N3