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Track cell intensity

by adufour / Alexandre Dufour

Detects and tracks cells in a 2D or 3D time-lapse sequence using active contours, and produces a list of ROI where intensity is measured and reported into a workbook.

version 2 (last version):

Download to use and modify in Icy. How do I use protocols ? A Problem ? ask the community.
Changelog for this version: * Added a pre-detection step using the HK-Means approach * ROI corresponding to the tracked objects are added to the original image

Documentation

The cell must be first delineated with a ROI in the first image of the video.


Previous versions:


version 1:

Download to use and modify in Icy.
Changelog for this version: initial version


Icy protocol publication Id : W1U4T9