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Auto Threshold

by tprovoost / Thomas Provoost

Auto Thresholder using KMeans method. Based on Thresholder plugin.

version 1 (last version):

download to use and modify in Icy. How do I use scripts ? A Problem ? ask the community.
Changelog for this version: initial version
import the different Classes needed
	- Icy is needed to use getSequence() and Icy.addSequence()
	- Package thresholder is needed to do the threshold with 
	  Thresholder and KMeans classes.

Get the focused Sequence. This is a shortcut for:
seq = getSequence()

// Check if sequence is null, as we cannot perform a threshold on 
// something that does not exist.
if (seq != null) {

	// computes the kmeans thresholds for automatic thresholding
	kmeans = KMeans.computeKMeansThresholds(seq, 0, 2, 255)

	// performs the threshold and put the result (a sequence) inside a variable
	result = Thresholder.threshold(seq, 0, kmeans, false)

	// display the result of the threshold
	result.setName(seq.getName() + "thresholded")

This script has no documentation. A Problem ? ask the community.

Icy script publication Id : A4W1C3