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• Version 1 • Released on: 2014-01-22 14:11:21
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  initial version

  importClass(Packages.icy.type.point.Point5D) importClass(Packages.icy.main.Icy) importClass(Packages.icy.sequence.SequenceUtil) // this script takes a sequence as input, crop it with a ROI, // and then copy the original ROI and put it at (0,0) location. // remark: some null-tests are not performed like checking if a sequence exists, if it has ROIs... // I did not put them to create a light script, easy to read sequence = getSequence(); // define the ROI for the crop roiToUse = null; // try to find which ROI to use if ( sequence.getSelectedROI() != null ) { // get selected ROI roiToUse = sequence.getSelectedROI(); }else { // take the 1st ROI roiToUse = sequence.getROIs().get( 0 ); } // test is a ROI hab been found. if ( roiToUse == null ) throw "CropScript: At least 1 ROI is needed for this operation."; // crop the sequence. croppedSequence = SequenceUtil.getSubSequence( sequence, roiToUse ); // display the sequence Icy.getMainInterface().addSequence( croppedSequence ); // get a copy of the ROI roiCopy = roiToUse.getCopy(); if ( roiCopy.canSetPosition() ) // check if the ROI manage the setPosition method { //Set the new 5d position roiCopy.setPosition5D( new Point5D.Double( 0 ,0 ,0 ,0 ,0 ) ); } // add the final ROI to the cropped sequence croppedSequence.addROI( roiCopy, false );

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  importClass(Packages.icy.type.point.Point5D) importClass(Packages.icy.main.Icy) importClass(Packages.icy.sequence.SequenceUtil)   // this script takes a sequence as input, crop it with a ROI, // and then copy the original ROI and put it at (0,0) location. // remark: some null-tests are not performed like checking if a sequence exists, if it has ROIs... // I did not put them to create a light script, easy to read   sequence = getSequence();   // define the ROI for the crop roiToUse = null;   // try to find which ROI to use if ( sequence.getSelectedROI() != null ) { // get selected ROI roiToUse = sequence.getSelectedROI(); }else { // take the 1st ROI roiToUse = sequence.getROIs().get( 0 ); }   // test is a ROI hab been found. if ( roiToUse == null ) throw "CropScript: At least 1 ROI is needed for this operation.";   // crop the sequence. croppedSequence = SequenceUtil.getSubSequence( sequence, roiToUse );   // display the sequence Icy.getMainInterface().addSequence( croppedSequence );   // get a copy of the ROI roiCopy = roiToUse.getCopy();   if ( roiCopy.canSetPosition() ) // check if the ROI manage the setPosition method { //Set the new 5d position roiCopy.setPosition5D( new Point5D.Double( 0 ,0 ,0 ,0 ,0 ) ); }   // add the final ROI to the cropped sequence croppedSequence.addROI( roiCopy, false );