plugins.big.blobplugin.descriptors

Class EllipsoidDescriptor

java.lang.Object

plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid

plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D

plugins.big.blobplugin.descriptors.EllipsoidDescriptor

All Implemented Interfaces:

CellDescriptor

public class EllipsoidDescriptor
extends plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
implements CellDescriptor

Nested Class Summary

Nested classes/interfaces inherited from interface plugins.big.blobplugin.descriptors.CellDescriptor

CellDescriptor.CellComparator

Field Summary

Fields

Modifier and Type	Field and Description
double	_energy

Fields inherited from class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D

a, alpha, b, beta, c, gamma, x0, y0, z0

Constructor Summary

Constructors

Constructor and Description
EllipsoidDescriptor() Default Constructor.
EllipsoidDescriptor(EllipsoidDescriptor other) Copy Constructor.
EllipsoidDescriptor(int t) Default Constructor.

Method Summary

Methods

Modifier and Type	Method and Description
double	computeEnergy(ImageDescriptor imgInt) Compute the energy of the cell.
double	energy() Energy of the cell.
double[]	getParameters() Return the normalize parameters of the cell.
void	init(icy.type.point.Point4D center) Initialize the cells parameters.
boolean	isClosedTo(CellDescriptor other) Test if two cells can be considered as equal.
void	setParameters(double[] parameters) Set all the parameters of the cell.

Methods inherited from class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D

clone, contains, contains, getPerimeter, getRadius, getRotationMatrix, getVolume, intersectionAtZ, isOver, isValid, toROI, toString

Methods inherited from class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid

applyRotation, getProperty, getT, multiplyMatrices, setProperty, setT, transposeMatrix

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

_energy

public double _energy

Constructor Detail

EllipsoidDescriptor

public EllipsoidDescriptor()

Default Constructor.

EllipsoidDescriptor

public EllipsoidDescriptor(int t)

Default Constructor.

Parameters:

t - Time corresponding to this cell.

EllipsoidDescriptor

public EllipsoidDescriptor(EllipsoidDescriptor other)

Copy Constructor.

Parameters:

other - Cell to copy.

Method Detail

init

public void init(icy.type.point.Point4D center)

Description copied from interface: CellDescriptor

Initialize the cells parameters.

Specified by:

init in interface CellDescriptor

Parameters:

center - Center of the cell. The fourth component is the initial radius.

energy

public double energy()

Description copied from interface: CellDescriptor

Energy of the cell.

Specified by:

energy in interface CellDescriptor

getParameters

public double[] getParameters()

Description copied from interface: CellDescriptor

Return the normalize parameters of the cell.

Specified by:

getParameters in interface CellDescriptor

setParameters

public void setParameters(double[] parameters)

Description copied from interface: CellDescriptor

Set all the parameters of the cell.

Specified by:

setParameters in interface CellDescriptor

Parameters:

parameters - Normalized parameters. The last element has to be the radius obtained from @ref getParameters().

computeEnergy

public double computeEnergy(ImageDescriptor imgInt)

Description copied from interface: CellDescriptor

Compute the energy of the cell. The energy is computed with the formula: \f[ E = \frac{\left(\sqrt(2)\int_{\Omega_{shell}} mask\left(\textbf{x}\right)~d\Omega - \int_{\Omega_{cell}} mask\left(\textbf{x}\right)~d\Omega\right) - \int_{\Omega_{cell}} mask\left(\textbf{x}\right)~d\Omega}{Volume_{cell}} \f] Shell design a scaled version of the cell by a factor \f$\sqrt(2)\f$ and \f$\Omega\f$ is the surface of the cell.

Specified by:

computeEnergy in interface CellDescriptor

isClosedTo

public boolean isClosedTo(CellDescriptor other)

Description copied from interface: CellDescriptor

Test if two cells can be considered as equal.

Specified by:

isClosedTo in interface CellDescriptor

Parameters:

other - Other cell to be compared with. Must be of the same type (EllipseDescriptor or EllipsoidDescriptor).

Returns:

Return true it the two cells are closed enough to be considered as equal.