Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
G
gamma
- Variable in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid3D
One of the angle of the ellipsoid.
Geometry2D
- Class in
plugins.big.bigsnakeutils.shape.utils
Class that encapsulates some geometric manipulation procedures.
Geometry2D()
- Constructor for class plugins.big.bigsnakeutils.shape.utils.
Geometry2D
getAbsoluteAccuracy()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getAbsoluteAccuracy()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getAppName()
- Method in class plugins.big.bigsnakeutils.core.
Settings
Returns the name of the plug-in.
getAppVersion()
- Method in class plugins.big.bigsnakeutils.core.
Settings
Returns the version of the plug-in.
getArea()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI2D
getBinaryMask()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
Returns a binary image representing the interior of the snake.
getCentroid()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
Returns a point with the position of the center of gravity of the scales.
getCentroid()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
Returns a point with the position of the center of gravity of the scales.
getCentroidRefinement()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
Returns a point with the position of the center of gravity of the scales.
getColor()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
Returns the associated color of the scale.
getColor()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DScale
Returns the associated color of the scale.
getControlPoint(int)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
Curve
Returns the control point for the given index.
getControlPoints()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
Curve
Returns the list of the control points.
getCoordinates()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DScale
Returns the coordinates of the scales.
getCopy()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI2D
getCopy()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI3D
getCurrentIndex()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
Returns the index selected control point.
getCurve()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
Returns the curve displayed by the canvas.
getDefaultNodes()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape
getDefaultNodes()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape3D
getDefaultValue()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveModel
getDefaultValue()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
getDescriptor()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI2D
Returns the descriptor associated to this ROI.
getDescriptor()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI3D
Returns the descriptor associated to this ROI.
getEditorComponent()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveEditor
getEditorComponent()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
getEnergyGradient()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
The purpose of this method is to compute the gradient of the snake energy with respect to the snake-defining nodes.
getEnergyGradient()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
The purpose of this method is to compute the gradient of the snake energy with respect to the snake-defining nodes.
getFilterSize()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
getFirst()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Double
getFirst()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Float
getFirst()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair
Returns the first element of the pair.
getFirst()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Integer
getFirstMaximum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the maximum for the first value of the pair.
getFirstMaximum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the maximum for the first value of the pair.
getFirstMaximum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Returns the maximum for the first value of the pair.
getFirstMinimum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the minimum for the first value of the pair.
getFirstMinimum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the minimum for the first value of the pair.
getFirstMinimum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Returns the minimum for the first value of the pair.
getFirstStepSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the step size for the first value of the pair.
getFirstStepSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the step size for the first value of the pair.
getFirstStepSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Returns the step size for the first value of the pair.
getIcyRequiredVersion()
- Method in class plugins.big.bigsnakeutils.core.
Settings
Returns the minimum version of Icy in which the plug-in works properly.
getIndexRefinement()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
getInitialBracketingStep()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getInitialBracketingStep()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getInstance()
- Static method in class plugins.big.bigsnakeutils.core.
Settings
Get
Settings
instance
getLinkingWord()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the linking word displayed between the first and the second value of the pair.
getLinkingWord()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the linking word displayed between the first and the second value of the pair.
getMask()
- Method in class plugins.big.bigsnakeutils.shape.utils.
Binarizer3D
getMaximalParabolicBracketingExcursion()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getMaximalParabolicBracketingExcursion()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getMaximalRadius()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Maximum radius of the ellipsoid.
getMaximalRadius()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid2D
getMaximalRadius()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid3D
getMinimalRadius()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Minimum radius of the ellipsoid.
getMinimalRadius()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid2D
getMinimalRadius()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid3D
getMinNumberNodes()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape
getMinNumberNodes()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape3D
getName()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape
getName()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape3D
getNodes()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
This method provides an accessor to the snake-defining nodes.
getNodes()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
This method provides an accessor to the snake-defining nodes.
getNodes(int)
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
Circle
getNodes(int)
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape
getNodes(int)
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
PriorShape3D
getNonQuadraticBracketingDegeneracy()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getNonQuadraticBracketingDegeneracy()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getNPoints()
- Method in class plugins.big.bigsnakeutils.shape.utils.
ContourTracing
getNumericalGradientStepSize()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getNumericalGradientStepSize()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getNumNodes()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
This method returns the quantity of snake-defining nodes given by the method
getNodes
.
getNumNodes()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
This method returns the quantity of snake-defining nodes given by the method
getNodes
.
getNumScales()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
Returns the number of scales in the array returned by the method
getScales()
.
getOrthoprojectionMatrix()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.
ShapeProjector
Returns the matrix that encodes the orthogonal projector of an arbitrary shape to the subspace orthogonal to the shape-space.
getPerimeter()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Perimeter of the ellipsoid (surface in 3D).
getPerimeter()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid2D
getPerimeter()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid3D
getPerimeter()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI2D
getPosition3D()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI3D
getPreferredSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
getPreferredSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveEditor
getPreferredSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
getProjectionMatrix()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.
ShapeProjector
Returns the matrix that encodes the orthogonal projector of an arbitrary shape to the shape-space.
getProperty(String)
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Return the value of a property.
getRefinementFactor()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
getRelativeAccuracy()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getRelativeAccuracy()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getRotationMatrix()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Return the matrix of rotation corresponding to the ellipsoid orientation.
getRotationMatrix()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid2D
getRotationMatrix()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid3D
getScale(int)
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
Returns the i-th scale of the method
getScales()
.
getScales()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
The purpose of this method is to determine what to draw on screen, given the current configuration of nodes.
getScales()
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
The purpose of this method is to determine what to draw on screen, given the current configuration of nodes.
getSecond()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Double
getSecond()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Float
getSecond()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair
Returns the second element of the pair.
getSecond()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Integer
getSecondMaximum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the maximum for the second value of the pair.
getSecondMaximum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the maximum for the second value of the pair.
getSecondMaximum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Returns the maximum for the second value of the pair.
getSecondMinimum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the minimum for the second value of the pair.
getSecondMinimum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the minimum for the second value of the pair.
getSecondMinimum()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Returns the minimum for the second value of the pair.
getSecondStepSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Returns the step size for the second value of the pair.
getSecondStepSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Returns the step size for the second value of the pair.
getSecondStepSize()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Returns the step size for the second value of the pair.
getShape()
- Method in class plugins.big.bigsnakeutils.shape.priorshapes.
ShapeProjector
Returns the type of prior-shape that is used.
getSizeRefinementCoef()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
getStrokeWidth()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
Returns the associated stroke width of the scale.
getSubdivisionPoints()
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
This method provides an accessor to the snake subdivision points.
getSurfaceArea()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI3D
getT()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Time frame of the ellipsoid.
getT()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI2D
getT()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI3D
getTrace()
- Method in class plugins.big.bigsnakeutils.shape.utils.
ContourTracing
getValueAsString()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
VarCurve
getValueAsString()
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
VarPair
getVanishingGradientConvergence()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getVanishingGradientConvergence()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getVanishingStepConvergence()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getVanishingStepConvergence()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getVanishingTotalDisplacementConvergence()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
getVanishingTotalDisplacementConvergence()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
getVolume()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Volume of the ellipsoid (surface in 2D).
getVolume()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid2D
getVolume()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
Ellipsoid3D
getVolume()
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
EllipsoidROI3D
getX(double[][], int, int, int, int, int, int, double[])
- Static method in class plugins.big.bigsnakeutils.process.process3D.
ImageArrayUtils
Puts in a one dimensional array the information of one column along the 1st dimension of an image stack.
getXCoordinates()
- Method in class plugins.big.bigsnakeutils.shape.utils.
ContourTracing
getY(double[][], int, int, int, int, int, int, double[])
- Static method in class plugins.big.bigsnakeutils.process.process3D.
ImageArrayUtils
Puts in a one dimensional array the information of one column along the 2nd dimension of an image stack.
getYCoordinates()
- Method in class plugins.big.bigsnakeutils.shape.utils.
ContourTracing
getZ(double[][], int, int, int, int, int, int, double[])
- Static method in class plugins.big.bigsnakeutils.process.process3D.
ImageArrayUtils
Puts in a one dimensional array the information of one column along the 3rd dimension of an image stack.
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z