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I

ID_ACTIVECHANNEL - Static variable in class plugins.big.bigsnake.core.ImageLUTContainer
Label of the XML tag containing the information of the channel number used in the snake.
ID_ALPHA - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag containing the energy trade-off between the contour energy and the region energy.
ID_BETA - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag containing the energy weight of the prior shape energy.
ID_CONTROL_POINT - Static variable in class plugins.big.bigsnake.snake.ESnake
Label of the XML tag containing the a single snake-defining control point.
ID_CONTROL_POINTS - Static variable in class plugins.big.bigsnake.snake.ESnake
Label of the XML tag containing the list of snake-defining control points.
ID_DETECT_TYPE - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag informing about the brightness of the target to segment (brighter or darker than the background).
ID_ENERGY_TYPE - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag informing about the type of energy the snake uses (contour, region or mixture).
ID_IMMORTAL - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag informing if the number of iterations of the snake is limited or not.
ID_M - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag containing the number of control points of the snake.
ID_MAX_LIFE - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag containing the maximum number of iterations.
ID_PRIOR_SHAPE_TYPE - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag informing about the type of prior shape that is used in the energy.
ID_SHAPE_SPACE_TYPE - Static variable in class plugins.big.bigsnake.snake.ESnakeParameters
Label of the XML tag informing about the type of shape space that is used in the energy.
ID_SIGMA - Static variable in class plugins.big.bigsnake.core.ImageLUTContainer
Label of the XML tag containing the standard deviation of the Gaussian smoothing applied to the input image when computing the contour energy.
ID_SNAKE_PARAMETERS - Static variable in class plugins.big.bigsnake.roi.ROI2DSnake
XML tag for the snake parameters.
ImageLUTContainer - Class in plugins.big.bigsnake.core
Container for the LUTs.
ImageLUTContainer() - Constructor for class plugins.big.bigsnake.core.ImageLUTContainer
Default constructor.
ImageSettingsPane - Class in plugins.big.bigsnake.gui
Panel in which the user specifies image-related parameters.
ImageSettingsPane(String, HashMap<Sequence, ImageLUTContainer>) - Constructor for class plugins.big.bigsnake.gui.ImageSettingsPane
Constructor.
IMMORTAL_DEFAULT - Static variable in class plugins.big.bigsnake.core.Settings
Default value of the immortal flag.
initialize(boolean) - Method in class plugins.big.bigsnake.snake.ESnake
 
InputFormat - Enum in plugins.big.bigsnake.io
Enumeration of possible input formats in the protocol.
IOXMLUtils - Class in plugins.big.bigsnake.io
Class that provides loading and exporting capabilities to the snake.
IOXMLUtils() - Constructor for class plugins.big.bigsnake.io.IOXMLUtils
Default constructor.
isActiveSnake(SnakeKeeper) - Method in class plugins.big.bigsnake.BIGSnake
Returns true if SnakeKeeper passed is the active one.
isActiveSnakeKeeper(SnakeKeeper) - Method in class plugins.big.bigsnake.keeper.KeepersList
Returns true if the SnakeKeeper passed as a parameters if the active one.
isAlive() - Method in class plugins.big.bigsnake.snake.ESnake
The purpose of this method is to monitor the status of the snake.
isEmpty() - Method in class plugins.big.bigsnake.core.Snake2DClipboard
Returns true if there are no snake nodes or snake parameters in the clipboard.
isEmpty() - Method in class plugins.big.bigsnake.keeper.KeepersList
Returns true is the list contains no elements.
isImmortal() - Method in class plugins.big.bigsnake.gui.SnakeSettingsPane
Returns true if the user wants to ignore the maximum number of iterations, and evolve the snake till convergence.
isImmortal() - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
isInitialized() - Method in class plugins.big.bigsnake.snake.ESnake
Returns true if the snake has been initialized.
isLocalRefinement() - Method in class plugins.big.bigsnake.snake.ESnake
 
isLocalRefinementAction() - Method in class plugins.big.bigsnake.snake.ESnake
 
isLUTUpToDate() - Method in class plugins.big.bigsnake.core.ImageLUTContainer
If true, the LUTs are consistent with the input parameters.
isValid() - Method in class plugins.big.bigsnake.snake.ESnake
Returns false if the snake reaches an invalid configuration.
itemStateChanged(ItemEvent) - Method in class plugins.big.bigsnake.gui.SnakeSettingsPane
Handles the events of the combo boxes and the checkbox.

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