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I

ID_ALPHA - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag containing the energy trade-off between the contour energy and the region energy.
ID_DETECT_TYPE - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag informing about the brightness of the target to segment (brighter or darker than the background).
ID_ENERGY_TYPE - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag informing about the type of energy the snake uses (contour, region or mixture).
ID_GAMMA - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag containing the surface stiffness.
ID_IMMORTAL - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag informing if the number of iterations of the snake is limited or not.
ID_M - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag containing the number of control points of the snake.
ID_MAX_LIFE - Static variable in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Label of the XML tag containing the maximum number of iterations.
ImageLUTContainer - Class in plugins.big.bigsnake3d.core
Class that encapsulates the image-related look-up tables.
ImageLUTContainer() - Constructor for class plugins.big.bigsnake3d.core.ImageLUTContainer
Default constructor.
ImageSettingsPane - Class in plugins.big.bigsnake3d.gui
Panel in which the user specifies image-related parameters.
ImageSettingsPane(String, HashMap<Sequence, ImageLUTContainer>) - Constructor for class plugins.big.bigsnake3d.gui.ImageSettingsPane
Constructor.
initialize() - Method in class plugins.big.bigsnake3d.snake.SphereSnake
Initializes the snake class.
InputFormat - Enum in plugins.big.bigsnake3d.io
Enumeration of possible input formats in the protocol.
intersects(double, double, double, double, double, double) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
intersects(double, double, double, double, double, double, double, double, double, double) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
isActiveSnake(SnakeKeeper) - Method in class plugins.big.bigsnake3d.BIGSnake3D
Returns true if SnakeKeeper passed is the active one.
isActiveSnakeKeeper(SnakeKeeper) - Method in class plugins.big.bigsnake3d.keeper.KeepersList
Returns true if the SnakeKeeper passed as a parameters if the active one.
isAlive() - Method in class plugins.big.bigsnake3d.snake.SphereSnake
The purpose of this method is to monitor the status of the snake.
isEmpty() - Method in class plugins.big.bigsnake3d.core.Snake3DClipboard
Returns true if there are no snake nodes or snake parameters in the clipboard.
isEmpty() - Method in class plugins.big.bigsnake3d.keeper.KeepersList
Returns true is the list contains no elements.
isImmortal() - Method in class plugins.big.bigsnake3d.gui.SnakeSettingsPane
Returns true if the user wants to ignore the maximum number of iterations, and evolve the snake till convergence.
isImmortal() - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
isInitialized() - Method in class plugins.big.bigsnake3d.snake.SphereSnake
Returns true if the snake has been initialized.
isLUTUpToDate() - Method in class plugins.big.bigsnake3d.core.ImageLUTContainer
If true, the LUTs are consistent with the input parameters.
isValid() - Method in class plugins.big.bigsnake3d.snake.SphereSnake
Returns false if the snake reaches an invalid configuration.
itemStateChanged(ItemEvent) - Method in class plugins.big.bigsnake3d.gui.DisplaySettingsPane
Handles the events of the combo boxes and the checkbox.
itemStateChanged(ItemEvent) - Method in class plugins.big.bigsnake3d.gui.SnakeSettingsPane
Handles the events of the combo boxes and the checkbox.

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