A B C D E F G H I K L M N O P Q R S T U V W X Y Z

G

gamma - Variable in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
One of the angle of the ellipsoid.
Geometry2D - Class in plugins.big.bigsnakeutils.shape.utils
Class that encapsulates some geometric manipulation procedures.
Geometry2D() - Constructor for class plugins.big.bigsnakeutils.shape.utils.Geometry2D
 
getAbsoluteAccuracy() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getAbsoluteAccuracy() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getAppName() - Method in class plugins.big.bigsnakeutils.core.Settings
Returns the name of the plug-in.
getAppVersion() - Method in class plugins.big.bigsnakeutils.core.Settings
Returns the version of the plug-in.
getArea() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI2D
 
getBinaryMask() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
Returns a binary image representing the interior of the snake.
getCentroid() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
Returns a point with the position of the center of gravity of the scales.
getCentroid() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
Returns a point with the position of the center of gravity of the scales.
getCentroidRefinement() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
Returns a point with the position of the center of gravity of the scales.
getColor() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DScale
Returns the associated color of the scale.
getColor() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DScale
Returns the associated color of the scale.
getControlPoint(int) - Method in class plugins.big.bigsnakeutils.icy.gui.curve.Curve
Returns the control point for the given index.
getControlPoints() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.Curve
Returns the list of the control points.
getCoordinates() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DScale
Returns the coordinates of the scales.
getCopy() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI2D
 
getCopy() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI3D
 
getCurrentIndex() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.CurveCanvas
Returns the index selected control point.
getCurve() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.CurveCanvas
Returns the curve displayed by the canvas.
getDefaultNodes() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape
 
getDefaultNodes() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape3D
 
getDefaultValue() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.CurveModel
 
getDefaultValue() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
 
getDescriptor() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI2D
Returns the descriptor associated to this ROI.
getDescriptor() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI3D
Returns the descriptor associated to this ROI.
getEditorComponent() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.CurveEditor
 
getEditorComponent() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
 
getEnergyGradient() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
The purpose of this method is to compute the gradient of the snake energy with respect to the snake-defining nodes.
getEnergyGradient() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
The purpose of this method is to compute the gradient of the snake energy with respect to the snake-defining nodes.
getFilterSize() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
 
getFirst() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair.Double
 
getFirst() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair.Float
 
getFirst() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair
Returns the first element of the pair.
getFirst() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair.Integer
 
getFirstMaximum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the maximum for the first value of the pair.
getFirstMaximum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the maximum for the first value of the pair.
getFirstMaximum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
Returns the maximum for the first value of the pair.
getFirstMinimum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the minimum for the first value of the pair.
getFirstMinimum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the minimum for the first value of the pair.
getFirstMinimum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
Returns the minimum for the first value of the pair.
getFirstStepSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the step size for the first value of the pair.
getFirstStepSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the step size for the first value of the pair.
getFirstStepSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
Returns the step size for the first value of the pair.
getIcyRequiredVersion() - Method in class plugins.big.bigsnakeutils.core.Settings
Returns the minimum version of Icy in which the plug-in works properly.
getIndexRefinement() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
 
getInitialBracketingStep() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getInitialBracketingStep() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getInstance() - Static method in class plugins.big.bigsnakeutils.core.Settings
Get Settings instance
getLinkingWord() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the linking word displayed between the first and the second value of the pair.
getLinkingWord() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the linking word displayed between the first and the second value of the pair.
getMask() - Method in class plugins.big.bigsnakeutils.shape.utils.Binarizer3D
 
getMaximalParabolicBracketingExcursion() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getMaximalParabolicBracketingExcursion() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getMaximalRadius() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Maximum radius of the ellipsoid.
getMaximalRadius() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid2D
 
getMaximalRadius() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
 
getMinimalRadius() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Minimum radius of the ellipsoid.
getMinimalRadius() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid2D
 
getMinimalRadius() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
 
getMinNumberNodes() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape
 
getMinNumberNodes() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape3D
 
getName() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape
 
getName() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape3D
 
getNodes() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
This method provides an accessor to the snake-defining nodes.
getNodes() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
This method provides an accessor to the snake-defining nodes.
getNodes(int) - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.Circle
 
getNodes(int) - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape
 
getNodes(int) - Method in class plugins.big.bigsnakeutils.shape.priorshapes.shapes.PriorShape3D
 
getNonQuadraticBracketingDegeneracy() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getNonQuadraticBracketingDegeneracy() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getNPoints() - Method in class plugins.big.bigsnakeutils.shape.utils.ContourTracing
 
getNumericalGradientStepSize() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getNumericalGradientStepSize() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getNumNodes() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
This method returns the quantity of snake-defining nodes given by the method getNodes.
getNumNodes() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
This method returns the quantity of snake-defining nodes given by the method getNodes.
getNumScales() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
Returns the number of scales in the array returned by the method getScales().
getOrthoprojectionMatrix() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.ShapeProjector
Returns the matrix that encodes the orthogonal projector of an arbitrary shape to the subspace orthogonal to the shape-space.
getPerimeter() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Perimeter of the ellipsoid (surface in 3D).
getPerimeter() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid2D
 
getPerimeter() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
 
getPerimeter() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI2D
 
getPosition3D() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI3D
 
getPreferredSize() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.CurveCanvas
 
getPreferredSize() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.CurveEditor
 
getPreferredSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
 
getProjectionMatrix() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.ShapeProjector
Returns the matrix that encodes the orthogonal projector of an arbitrary shape to the shape-space.
getProperty(String) - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Return the value of a property.
getRefinementFactor() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
 
getRelativeAccuracy() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getRelativeAccuracy() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getRotationMatrix() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Return the matrix of rotation corresponding to the ellipsoid orientation.
getRotationMatrix() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid2D
 
getRotationMatrix() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
 
getScale(int) - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
Returns the i-th scale of the method getScales().
getScales() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
The purpose of this method is to determine what to draw on screen, given the current configuration of nodes.
getScales() - Method in interface plugins.big.bigsnakeutils.icy.snake3D.Snake3D
The purpose of this method is to determine what to draw on screen, given the current configuration of nodes.
getSecond() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair.Double
 
getSecond() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair.Float
 
getSecond() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair
Returns the second element of the pair.
getSecond() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.Pair.Integer
 
getSecondMaximum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the maximum for the second value of the pair.
getSecondMaximum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the maximum for the second value of the pair.
getSecondMaximum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
Returns the maximum for the second value of the pair.
getSecondMinimum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the minimum for the second value of the pair.
getSecondMinimum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the minimum for the second value of the pair.
getSecondMinimum() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
Returns the minimum for the second value of the pair.
getSecondStepSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.EzVarPair
Returns the step size for the second value of the pair.
getSecondStepSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairEditor
Returns the step size for the second value of the pair.
getSecondStepSize() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.PairRangeModel
Returns the step size for the second value of the pair.
getShape() - Method in class plugins.big.bigsnakeutils.shape.priorshapes.ShapeProjector
Returns the type of prior-shape that is used.
getSizeRefinementCoef() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
 
getStrokeWidth() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DScale
Returns the associated stroke width of the scale.
getSubdivisionPoints() - Method in interface plugins.big.bigsnakeutils.icy.snake2D.Snake2D
This method provides an accessor to the snake subdivision points.
getSurfaceArea() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI3D
 
getT() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Time frame of the ellipsoid.
getT() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI2D
 
getT() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI3D
 
getTrace() - Method in class plugins.big.bigsnakeutils.shape.utils.ContourTracing
 
getValueAsString() - Method in class plugins.big.bigsnakeutils.icy.gui.curve.VarCurve
 
getValueAsString() - Method in class plugins.big.bigsnakeutils.icy.gui.pair.VarPair
 
getVanishingGradientConvergence() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getVanishingGradientConvergence() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getVanishingStepConvergence() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getVanishingStepConvergence() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getVanishingTotalDisplacementConvergence() - Method in class plugins.big.bigsnakeutils.icy.snake2D.Snake2DPowellOptimizer
 
getVanishingTotalDisplacementConvergence() - Method in class plugins.big.bigsnakeutils.icy.snake3D.Snake3DPowellOptimizer
 
getVolume() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.AbstractEllipsoid
Volume of the ellipsoid (surface in 2D).
getVolume() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid2D
 
getVolume() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.Ellipsoid3D
 
getVolume() - Method in class plugins.big.bigsnakeutils.icy.ellipsoid.EllipsoidROI3D
 
getX(double[][], int, int, int, int, int, int, double[]) - Static method in class plugins.big.bigsnakeutils.process.process3D.ImageArrayUtils
Puts in a one dimensional array the information of one column along the 1st dimension of an image stack.
getXCoordinates() - Method in class plugins.big.bigsnakeutils.shape.utils.ContourTracing
 
getY(double[][], int, int, int, int, int, int, double[]) - Static method in class plugins.big.bigsnakeutils.process.process3D.ImageArrayUtils
Puts in a one dimensional array the information of one column along the 2nd dimension of an image stack.
getYCoordinates() - Method in class plugins.big.bigsnakeutils.shape.utils.ContourTracing
 
getZ(double[][], int, int, int, int, int, int, double[]) - Static method in class plugins.big.bigsnakeutils.process.process3D.ImageArrayUtils
Puts in a one dimensional array the information of one column along the 3rd dimension of an image stack.

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