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saveToXML(Element)
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
Saves the execution parameters of the snake to an XML node.
saveToXML(Element)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DNode
saveToXML(Node)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
Saves the scale in an XML node.
saveToXML(Element)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DNode
saveToXML(Node)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DScale
Saves the scale in an XML node.
sec(double)
- Static method in class plugins.big.bigsnakeutils.process.process1D.
BSplineBasis
Secant.
second
- Variable in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Double
second
- Variable in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Float
second
- Variable in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Integer
Semicircle
- Class in
plugins.big.bigsnakeutils.shape.priorshapes.shapes
Shape prior with taking the shape of a semicircle.
Semicircle()
- Constructor for class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
Semicircle
SequenceToArrayConverter
- Class in
plugins.big.bigsnakeutils.process.process3D
Utilities to transform
Sequence
objects to arrays.
SequenceToArrayConverter()
- Constructor for class plugins.big.bigsnakeutils.process.process3D.
SequenceToArrayConverter
sequenceToBinaryArray(Sequence)
- Static method in class plugins.big.bigsnakeutils.process.process3D.
SequenceToArrayConverter
Converts a binary
Sequence
to a
boolean
array.
sequenceToDoubleArray(Sequence)
- Static method in class plugins.big.bigsnakeutils.process.process3D.
SequenceToArrayConverter
Converts a
Sequence
to a
double
array.
setAbsoluteAccuracy(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setAbsoluteAccuracy(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the bounds for both values of the pair.
setBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the bounds for the both values of the pair.
setBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the bounds for both values of the pair.
setComponentToolTipText(String)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveEditor
setComponentToolTipText(String)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
setControlPoint(int, Point2D)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
Curve
Set the control point for the given index.
setControlPoint(int, double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
Curve
Set the control point for the given index.
setControlPoint(int, Point2D)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
PolynomialCurve
setControlPoints(Vector<Point2D>)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
Curve
Set the list of the control points.
setControlPoints(Vector<Point2D>)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
PolynomialCurve
setCurrentIndex(int)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
Selects a control point.
setCurve(Curve)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
Sets the curve to display.
setFirst(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Double
setFirst(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Float
setFirst(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Integer
setFirst(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair
Set the first element of the pair.
setFirstBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the bounds for the first value of the pair.
setFirstBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the bounds for the first value of the pair.
setFirstBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the bounds for the first value of the pair.
setFirstMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the maximum for the first value of the pair.
setFirstMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the maximum for the first value of the pair.
setFirstMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the maximum for the first value of the pair.
setFirstMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
RangeRangeModel
setFirstMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the minimum for the first value of the pair.
setFirstMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the minimum for the first value of the pair.
setFirstMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the minimum for the first value of the pair.
setFirstMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
RangeRangeModel
setFirstStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the step size for the first value of the pair.
setFirstStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the step size for the first value of the pair.
setFirstStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the step size for the first value of the pair.
setIndexRefinement(int)
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
setInitialBracketingStep(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setInitialBracketingStep(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setLinkingWord(String)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the linking word displayed between the first and the second value of the pair.
setLinkingWord(String)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the linking word displayed between the first and the second value of the pair.
setMaximalParabolicBracketingExcursion(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setMaximalParabolicBracketingExcursion(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the maximum for both values of the pair.
setMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the maximum for the both values of the pair.
setMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the maximum for both values of the pair.
setMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the minimum for both values of the pair.
setMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the minimum for the both values of the pair.
setMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the minimum for both values of the pair.
setNodes(Snake2DNode[])
- Method in interface plugins.big.bigsnakeutils.icy.snake2D.
Snake2D
This method provides a mutator to the snake-defining nodes.
setNodes(Snake3DNode[])
- Method in interface plugins.big.bigsnakeutils.icy.snake3D.
Snake3D
This method provides a mutator to the snake-defining nodes.
setNonQuadraticBracketingDegeneracy(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setNonQuadraticBracketingDegeneracy(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setNumericalGradientStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setNumericalGradientStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setPair(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair
Set the values of the pair.
setPair(Pair)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair
Set the values of the pair.
setProperty(String, double)
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Set the value of a property.
setRelativeAccuracy(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setRelativeAccuracy(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setSecond(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Double
setSecond(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Float
setSecond(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair.Integer
setSecond(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
Pair
Set the second element of the pair.
setSecondBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the bounds for the second value of the pair.
setSecondBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the bounds for the second value of the pair.
setSecondBounds(double, double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the bounds for the second value of the pair.
setSecondMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the maximum for the second value of the pair.
setSecondMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the maximum for the second value of the pair.
setSecondMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the maximum for the second value of the pair.
setSecondMaximum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
RangeRangeModel
setSecondMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the minimum for the second value of the pair.
setSecondMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the minimum for the second value of the pair.
setSecondMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the minimum for the second value of the pair.
setSecondMinimum(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
RangeRangeModel
setSecondStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the step size for the second value of the pair.
setSecondStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the step size for the second value of the pair.
setSecondStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the step size for the second value of the pair.
setShowControls(boolean)
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
Set if the control points have to be displayed.
setStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
EzVarPair
Set the step size for both values of the pair.
setStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairEditor
Set the step size for the both values of the pair.
setStepSize(double)
- Method in class plugins.big.bigsnakeutils.icy.gui.pair.
PairRangeModel
Set the step size for the both values of the pair.
setStrokeWidth(float)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
Returns the associated stroke width of the scale.
setT(int)
- Method in class plugins.big.bigsnakeutils.icy.ellipsoid.
AbstractEllipsoid
Set the time associated with this ellipsoid.
Settings
- Class in
plugins.big.bigsnakeutils.core
Offers global parameters (settings) and functions used by the plug-in.
Settings()
- Constructor for class plugins.big.bigsnakeutils.core.
Settings
setTitle(String)
- Method in class plugins.big.bigsnakeutils.icy.gui.
CollapsiblePanel
setVanishingGradientConvergence(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setVanishingGradientConvergence(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setVanishingStepConvergence(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setVanishingStepConvergence(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
setVanishingTotalDisplacementConvergence(double)
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
setVanishingTotalDisplacementConvergence(double)
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
ShapeProjector
- Class in
plugins.big.bigsnakeutils.shape.priorshapes
Class that projects spline curves onto an affine invariant shape space.
ShapeProjector(PriorShape, Matrix, Matrix)
- Constructor for class plugins.big.bigsnakeutils.shape.priorshapes.
ShapeProjector
Constructor affine transform (discrete).
ShapeProjector(PriorShape, Matrix, Matrix, Matrix)
- Constructor for class plugins.big.bigsnakeutils.shape.priorshapes.
ShapeProjector
Constructor Similarity transform.
ShapeProjectorBuilder
- Class in
plugins.big.bigsnakeutils.shape.priorshapes
Factory class that constructs shape projectors.
ShapeProjectorBuilder(int)
- Constructor for class plugins.big.bigsnakeutils.shape.priorshapes.
ShapeProjectorBuilder
Constructor.
showControls()
- Method in class plugins.big.bigsnakeutils.icy.gui.curve.
CurveCanvas
Indicates if the control points are shown.
smooth(IcyBufferedImage, double)
- Static method in class plugins.big.bigsnakeutils.process.process2D.
FastGaussianFilter
Applies a fast implementation of a 2D Gaussian filter with a given standard deviation.
smooth(IcyBufferedImage, double, int, double)
- Static method in class plugins.big.bigsnakeutils.process.process2D.
FastGaussianFilter
Applies a fast implementation of a 2D Gaussian filter with a given standard deviation and tolerance.
smooth(double[], int, int, double)
- Static method in class plugins.big.bigsnakeutils.process.process2D.
FastGaussianFilter
Applies a fast implementation of a 2D Gaussian filter with a given standard deviation.
smooth(double[], int, int, double, int, double)
- Static method in class plugins.big.bigsnakeutils.process.process2D.
FastGaussianFilter
Applies a fast implementation of a 2D Gaussian filter with a given standard deviation and tolerance.
Snake2D
- Interface in
plugins.big.bigsnakeutils.icy.snake2D
This abstract class encapsulates the number-crunching aspect of snakes.
Snake2DNode
- Class in
plugins.big.bigsnakeutils.icy.snake2D
This class is used to store the snake-defining parameters.
Snake2DNode(double, double)
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DNode
This constructor builds a point that is initially neither frozen nor hidden.
Snake2DNode(double, double, boolean, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DNode
This constructor builds a point with the given initial values.
Snake2DOptimizer
- Class in
plugins.big.bigsnakeutils.icy.snake2D
This class encapsulates the optimization aspects of snakes.
Snake2DOptimizer()
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DOptimizer
Snake2DPowellOptimizer
- Class in
plugins.big.bigsnakeutils.icy.snake2D
This class implements a optimization scheme for parametric snakes based on Powell's method.
Snake2DPowellOptimizer()
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
Snake2DScale
- Class in
plugins.big.bigsnakeutils.icy.snake2D
This class is used to store the scales that are used to draw the skin of the snake.
Snake2DScale()
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
This constructor builds a scale with default values.
Snake2DScale(Color, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
This constructor builds a scale with the provided colors and flags.
Snake2DScale(double[], double[], int, Color, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
This constructor builds a scale with the provided colors and flags.
Snake2DScale(float[], float[], int, Color, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DScale
This constructor builds a scale with the provided colors and flags.
Snake3D
- Interface in
plugins.big.bigsnakeutils.icy.snake3D
This abstract class encapsulates the number-crunching aspect of snakes.
Snake3DNode
- Class in
plugins.big.bigsnakeutils.icy.snake3D
This class is used to store the snake-defining parameters.
Snake3DNode(double, double, double)
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DNode
This constructor builds a point that is initially neither frozen nor hidden.
Snake3DNode(double, double, double, boolean, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DNode
This constructor builds a point with the given initial values.
Snake3DOptimizer
- Class in
plugins.big.bigsnakeutils.icy.snake3D
This class encapsulates the optimization aspects of snakes.
Snake3DOptimizer()
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DOptimizer
Snake3DPowellOptimizer
- Class in
plugins.big.bigsnakeutils.icy.snake3D
This class implements a optimization scheme for parametric snakes base on Powell's method.
Snake3DPowellOptimizer()
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
Snake3DScale
- Class in
plugins.big.bigsnakeutils.icy.snake3D
This class is used to store the scales that are used to draw the skin of the snake.
Snake3DScale(int)
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DScale
This constructor builds a scale of length
length
.
Snake3DScale(int, Color, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DScale
This constructor builds a scale with the provided colors and flags.
Snake3DScale(double[][], Color, boolean)
- Constructor for class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DScale
This constructor builds a scale with the provided colors and flags.
Square
- Class in
plugins.big.bigsnakeutils.shape.priorshapes.shapes
Shape prior with taking the shape of a square with rounded edges.
Square()
- Constructor for class plugins.big.bigsnakeutils.shape.priorshapes.shapes.
Square
stopOptimizing()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DOptimizer
A call to this method should result in the optimization being currently performed by this object to be interrupted.
stopOptimizing()
- Method in class plugins.big.bigsnakeutils.icy.snake2D.
Snake2DPowellOptimizer
Requests stopping the optimization process.
stopOptimizing()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DOptimizer
A call to this method should result in the optimization being currently performed by this object to be interrupted.
stopOptimizing()
- Method in class plugins.big.bigsnakeutils.icy.snake3D.
Snake3DPowellOptimizer
Requests stopping the optimization process.
subdivConvolve(double[], double[], double[], int)
- Static method in class plugins.big.bigsnakeutils.process.process1D.
Convolver1D
Convolves a sequence with a kernel, and puts the result in a new array for the subdivision.
Overview
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