A B C D E G H I K L M O P R S T U V

S

saveSnakesToBinaryImage() - Method in class plugins.big.bigsnake3d.BIGSnake3D
Saves the snakes to a binary mask.
saveSnakesToXML() - Method in class plugins.big.bigsnake3d.BIGSnake3D
Saves the snakes to an XML file.
saveToXML(Node) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
 
saveToXML(Element) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
sequenceActivated(Sequence) - Method in class plugins.big.bigsnake3d.BIGSnake3D
Gets an event when a Sequence has been activated (focused).
sequenceChanged(SequenceEvent) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
sequenceClosed(Sequence) - Method in class plugins.big.bigsnake3d.BIGSnake3D
Gets an event when a Sequence has been closed.
sequenceClosed(Sequence) - Method in class plugins.big.bigsnake3d.gui.ImageSettingsPane
Erases from internal tables the entries of a particular image.
sequenceClosed(Sequence) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
sequenceDeactivated(Sequence) - Method in class plugins.big.bigsnake3d.BIGSnake3D
Gets an event when a Sequence has been deactivated (lost focus).
sequenceFocused(Sequence) - Method in class plugins.big.bigsnake3d.gui.ImageSettingsPane
Updates the interface to reflect the information of the image.
sequenceOpened(Sequence) - Method in class plugins.big.bigsnake3d.BIGSnake3D
Gets an event when a Sequence has been opened.
setActionPlane(ActionPlane) - Method in class plugins.big.bigsnake3d.keeper.KeepersList
Sets the ActionPlane to all elements of SnakeKeeper contained in the list.
setActionPlane(ActionPlane) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
setActionPlane(ActionPlane) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
setAlpha(double) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setChannelNumber(int) - Method in class plugins.big.bigsnake3d.core.ImageLUTContainer
Sets the active channel.
setDetectType(SphereSnakeTargetType) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setDisplayRange(int) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
setDisplaySettings(DisplaySettings) - Method in class plugins.big.bigsnake3d.BIGSnake3D
 
setDisplaySettings(DisplaySettings) - Method in class plugins.big.bigsnake3d.keeper.KeepersList
Sets the DisplaySettings to all elements of SnakeKeeper contained in the list.
setDisplaySettings(DisplaySettings) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
setEditable(boolean) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
 
setEditable(boolean) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
setEditingMode(SnakeEditMode) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
setEditMode(SnakeEditMode) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
setEnergyType(SphereSnakeEnergyType) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setGamma(double) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setID(String) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
setImmortal(boolean) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setM(int) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setMaxLife(int) - Method in class plugins.big.bigsnake3d.snake.SphereSnakeParameters
 
setNodes(Snake3DNode[]) - Method in class plugins.big.bigsnake3d.snake.SphereSnake
This method provides a mutator to the snake-defining nodes.
setPixelSize(double, double, double) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
 
setPixelSize(double, double, double) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
setPosition(double, double) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
 
setPosition(Point2D) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
 
setPosition(double, double, double) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
returns true is the position has changed
setPositionNoUpdate(double, double, double) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
returns true is the position has changed
setScaleSubsamplingFactor(int) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
setSelected(boolean) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
setSequence(Sequence) - Method in class plugins.big.bigsnake3d.core.ImageLUTContainer
Sets the active image from where the data is extracted.
setShape(Sequence) - Method in class plugins.big.bigsnake3d.snake.SphereSnake
 
setSigma(double) - Method in class plugins.big.bigsnake3d.core.ImageLUTContainer
Sets the standard deviation of the Gaussian kernel used for smoothing.
setSnakeEditMode(SnakeEditMode) - Method in class plugins.big.bigsnake3d.keeper.KeepersList
Sets the SnakeEditMode to all elements of SnakeKeeper contained in the list.
setSnakeEditMode(SnakeEditMode) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
 
setSnakeNodes(Snake3DNode[]) - Method in class plugins.big.bigsnake3d.core.Snake3DClipboard
 
setSnakeParameters(SphereSnakeParameters) - Method in class plugins.big.bigsnake3d.core.Snake3DClipboard
 
setSnakeParameters(SphereSnakeParameters) - Method in class plugins.big.bigsnake3d.gui.SnakeSettingsPane
Sets the snake parameters to the interface.
setSnakeParameters(SphereSnakeParameters) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
Updates the parameters of the snake.
setSnakeParameters(SphereSnakeParameters) - Method in class plugins.big.bigsnake3d.snake.SphereSnake
Sets the snake execution parameters.
setStroke(float) - Method in class plugins.big.bigsnake3d.roi.Anchor3D
 
setStrokeThicknessMultiplier(int) - Method in class plugins.big.bigsnake3d.roi.ROI3DSnake
 
Settings - Class in plugins.big.bigsnake3d.core
Offers global parameters (settings) and functions used by the plug-in.
Settings() - Constructor for class plugins.big.bigsnake3d.core.Settings
 
Settings.MeshResolution - Enum in plugins.big.bigsnake3d.core
 
setWindowIcon(JDialog) - Method in class plugins.big.bigsnake3d.core.Settings
Set the window icon.
setWindowIcon(IcyFrame) - Method in class plugins.big.bigsnake3d.core.Settings
Set the window icon.
shiftSnake(int, int, int) - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
Applies a shift on the position of the snake.
Snake3DClipboard - Class in plugins.big.bigsnake3d.core
Container where the defining nodes and parameters of a snake can be stored.
Snake3DClipboard() - Constructor for class plugins.big.bigsnake3d.core.Snake3DClipboard
 
SnakeEditMode - Enum in plugins.big.bigsnake3d.roi
Transformations that can be applied to the snake through the interface.
SnakeIcons - Enum in plugins.big.bigsnake3d.rsc.icon
 
SnakeInteraction - Enum in plugins.big.bigsnake3d.roi
 
SnakeKeeper - Class in plugins.big.bigsnake3d.keeper
Class that takes care of the optimization of the snake.
SnakeKeeper(Sequence, SphereSnake, BIGSnake3D) - Constructor for class plugins.big.bigsnake3d.keeper.SnakeKeeper
Default constructor.
SnakeSettingsPane - Class in plugins.big.bigsnake3d.gui
Panel in which the user specifies the parameters of the Sphere-Snake.
SnakeSettingsPane(String, BIGSnake3D) - Constructor for class plugins.big.bigsnake3d.gui.SnakeSettingsPane
Default constructor.
SphereSnake - Class in plugins.big.bigsnake3d.snake
Three-dimensional exponential spline snake (E-Snake).
SphereSnake(ImageLUTContainer, SphereSnakeParameters) - Constructor for class plugins.big.bigsnake3d.snake.SphereSnake
Default constructor.
SphereSnakeEnergyType - Enum in plugins.big.bigsnake3d.snake
Types of energy of the E-Snake.
SphereSnakeParameters - Class in plugins.big.bigsnake3d.snake
Class that wraps the parameters of the E-Snake.
SphereSnakeParameters(int, int, double, double, boolean, SphereSnakeTargetType, SphereSnakeEnergyType) - Constructor for class plugins.big.bigsnake3d.snake.SphereSnakeParameters
Default constructor.
SphereSnakeTargetType - Enum in plugins.big.bigsnake3d.snake
Types of energy of the E-Snake.
startOptimization() - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
Launches the optimization procedure in a new thread.
stateChanged(ChangeEvent) - Method in class plugins.big.bigsnake3d.gui.DisplaySettingsPane
Handles the events of the spinners.
stateChanged(ChangeEvent) - Method in class plugins.big.bigsnake3d.gui.ImageSettingsPane
Handles the events of the spinner.
stateChanged(ChangeEvent) - Method in class plugins.big.bigsnake3d.gui.SnakeSettingsPane
Handles the events of the spinners.
stopOptimization() - Method in class plugins.big.bigsnake3d.keeper.SnakeKeeper
Stops the optimization procedure.
STROKE_THICKNESS_DEFAULT - Static variable in class plugins.big.bigsnake3d.core.Settings
 

A B C D E G H I K L M O P R S T U V