A B C D E G I K L M O P R S T U V

S

saveSnakesToXML() - Method in class plugins.big.bigsnake.BIGSnake
Saves the snakes to an XML file.
saveSnakesToXML(ImageLUTContainer) - Method in class plugins.big.bigsnake.io.IOXMLUtils
Opens a dialog and saves all the snakes in the active Sequence in an XML file.
saveToXML(Node) - Method in class plugins.big.bigsnake.roi.ROI2DSnake
Saves a snake from an XML node.
saveToXML(Element) - Method in class plugins.big.bigsnake.snake.ESnake
Saves the snake-defining parameters in an XML file.
saveToXML(Element) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
sequenceActivated(Sequence) - Method in class plugins.big.bigsnake.BIGSnake
Gets an event when a Sequence has been activated (focused).
sequenceClosed(Sequence) - Method in class plugins.big.bigsnake.BIGSnake
Gets an event when a Sequence has been closed.
sequenceClosed(Sequence) - Method in class plugins.big.bigsnake.gui.ImageSettingsPane
Erases from internal tables the entries of a particular image.
sequenceDeactivated(Sequence) - Method in class plugins.big.bigsnake.BIGSnake
Gets an event when a Sequence has been deactivated (lost focus).
sequenceFocused(Sequence) - Method in class plugins.big.bigsnake.gui.ImageSettingsPane
Updates the interface to reflect the information of the image.
sequenceOpened(Sequence) - Method in class plugins.big.bigsnake.BIGSnake
Gets an event when a Sequence has been opened.
setAlpha(double) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setBeta(double) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setChannelNumber(int) - Method in class plugins.big.bigsnake.core.ImageLUTContainer
Sets the active channel.
setCustomPriorShape(Custom) - Method in class plugins.big.bigsnake.core.Snake2DClipboard
Sets the custom prior shape element.
setCustomPriorShape(Custom) - Method in class plugins.big.bigsnake.snake.ESnake
Sets a custom prior-shape to the snake.
setDetectType(ESnakeTargetType) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setEditable(boolean) - Method in class plugins.big.bigsnake.roi.ROI2DSnake
Sets the edit status of the ROI.
setEditMode(SnakeEditMode) - Method in class plugins.big.bigsnake.roi.ROI2DSnake
 
setEnergyType(ESnakeEnergyType) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setID(String) - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
 
setImmortal(boolean) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setIndexRefinement(int) - Method in class plugins.big.bigsnake.snake.ESnake
 
setM(int) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setMaxLife(int) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setNodes(Snake2DNode[]) - Method in class plugins.big.bigsnake.snake.ESnake
This method provides a mutator to the snake-defining nodes.
setPriorShapeType(ESnakePriorShapeType) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setSelected(boolean) - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
 
setSequence(Sequence) - Method in class plugins.big.bigsnake.core.ImageLUTContainer
Sets the active image from where the data is extracted.
setShapeSpaceType(ShapeSpaceType) - Method in class plugins.big.bigsnake.snake.ESnakeParameters
 
setSigma(double) - Method in class plugins.big.bigsnake.core.ImageLUTContainer
Sets the standard deviation of the Gaussian kernel used for smoothing.
setSnakeEditMode(SnakeEditMode) - Method in class plugins.big.bigsnake.keeper.KeepersList
Sets the SnakeEditMode to all elements of SnakeKeeper contained in the list.
setSnakeEditMode(SnakeEditMode) - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
 
setSnakeNodes(Snake2DNode[]) - Method in class plugins.big.bigsnake.core.Snake2DClipboard
Sets the spline control points of the snake.
setSnakeParameters(ESnakeParameters) - Method in class plugins.big.bigsnake.core.Snake2DClipboard
Sets the execution parameters of the E-Snake.
setSnakeParameters(ESnakeParameters) - Method in class plugins.big.bigsnake.gui.SnakeSettingsPane
Sets the snake parameters to the interface.
setSnakeParameters(ESnakeParameters, Custom) - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
Updates the parameters of the snake.
setSnakeParameters(ESnakeParameters) - Method in class plugins.big.bigsnake.snake.ESnake
Sets the E-Snake execution parameters.
Settings - Class in plugins.big.bigsnake.core
Offers global parameters (settings) and functions used by the plug-in.
Settings() - Constructor for class plugins.big.bigsnake.core.Settings
 
setWindowIcon(JDialog) - Method in class plugins.big.bigsnake.core.Settings
Set the window icon.
setWindowIcon(IcyFrame) - Method in class plugins.big.bigsnake.core.Settings
Set the window icon.
SHAPE_SPACE_DEFAULT - Static variable in class plugins.big.bigsnake.core.Settings
Default value of shape space information.
ShapeSpaceType - Enum in plugins.big.bigsnake.snake
Enumeration for shape space type
shiftSnake(int, int) - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
Applies a shift on the position of the snake.
Snake2DClipboard - Class in plugins.big.bigsnake.core
Container where the defining nodes and parameters of a snake can be stored.
Snake2DClipboard() - Constructor for class plugins.big.bigsnake.core.Snake2DClipboard
Default constructor.
snake_ - Variable in class plugins.big.bigsnake.keeper.SnakeKeeper
The snake associated to this SnakeKeeper.
SnakeEditMode - Enum in plugins.big.bigsnake.roi
Transformations that can be applied to the snake through the interface.
SnakeIcons - Enum in plugins.big.bigsnake.rsc.icon
 
SnakeKeeper - Class in plugins.big.bigsnake.keeper
Class that takes care of the synchronization of the snake optimization and the display.
SnakeKeeper(Sequence, ESnake, BIGSnake) - Constructor for class plugins.big.bigsnake.keeper.SnakeKeeper
Default.
SnakeSettingsPane - Class in plugins.big.bigsnake.gui
Panel in which the user specifies the parameters of the E-Snake.
SnakeSettingsPane(String, BIGSnake) - Constructor for class plugins.big.bigsnake.gui.SnakeSettingsPane
Default constructor.
startOptimization() - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
Launches the optimization procedure in a new thread.
stateChanged(ChangeEvent) - Method in class plugins.big.bigsnake.gui.ImageSettingsPane
Handles the events of the spinner.
stateChanged(ChangeEvent) - Method in class plugins.big.bigsnake.gui.SnakeSettingsPane
Handles the events of the spinners.
stopOptimization() - Method in class plugins.big.bigsnake.keeper.SnakeKeeper
Stops the optimization procedure.

A B C D E G I K L M O P R S T U V