Home › Forums › Bug Reports › Multi-D Acquisition saved image stacks are fault and refuse to open in Icy › Reply To: Multi-D Acquisition saved image stacks are fault and refuse to open in Icy

#66399
MasoudR
Participant

Hello Stephane,

Did you have any luck replicating the problems?

I’ve tried opening my tif files with the “Seperate files” option now and it gives me another error:
Java.lang.IndexOutOfBoundsException: Index 1 out-of-bounds for length 1
at java.base/jdk.internal.util.Preconditions.outOfBounds(Unknown Source)
at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Unknown Source)
at java.base/jdk.internal.util.Preconditions.checkIndex(Unknown Source)
at java.base/java.util.Objects.checkIndex(Unknown Source)
at java.base/java.util.ArrayList.get(Unknown Source)
at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:688)
at loci.formats.FormatReader.setId(FormatReader.java:1397)
at plugins.kernel.importer.LociImporterPlugin.openReader(LociImporterPlugin.java:939)
at plugins.kernel.importer.LociImporterPlugin.open(LociImporterPlugin.java:853)
at icy.file.Loader.internalLoadSingle(Loader.java:3764)
at icy.file.Loader.loadSequences(Loader.java:3237)
at icy.file.Loader$5.run(Loader.java:2303)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
They do open without error in imageJ

One of my image stacks: https://ufile.io/lmgbqdvi

  • This reply was modified 7 years, 3 months ago by
    MasoudR
    .