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Hello Stephane,
Did you have any luck replicating the problems?
I’ve tried opening my tif files with the “Seperate files” option now and it gives me another error:
Java.lang.IndexOutOfBoundsException: Index 1 out-of-bounds for length 1
at java.base/jdk.internal.util.Preconditions.outOfBounds(Unknown Source)
at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Unknown Source)
at java.base/jdk.internal.util.Preconditions.checkIndex(Unknown Source)
at java.base/java.util.Objects.checkIndex(Unknown Source)
at java.base/java.util.ArrayList.get(Unknown Source)
at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:688)
at loci.formats.FormatReader.setId(FormatReader.java:1397)
at plugins.kernel.importer.LociImporterPlugin.openReader(LociImporterPlugin.java:939)
at plugins.kernel.importer.LociImporterPlugin.open(LociImporterPlugin.java:853)
at icy.file.Loader.internalLoadSingle(Loader.java:3764)
at icy.file.Loader.loadSequences(Loader.java:3237)
at icy.file.Loader$5.run(Loader.java:2303)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
They do open without error in imageJ
One of my image stacks: https://ufile.io/lmgbqdvi
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This reply was modified 7 years, 3 months ago by
MasoudR.