Uses of Interface
icy.file.SequenceFileImporter

Packages that use SequenceFileImporter

Package	Description
icy.file	Contains all file operation tools and related objects
icy.gui.dialog	Contains all custom Dialog (modal frame)
icy.plugin.abstract_	Plugin abstract classes
plugins.kernel.importer	Contains all Importer type plugins for the kernel

Uses of SequenceFileImporter in icy.file

Classes in icy.file that implement SequenceFileImporter

Modifier and Type	Class and Description
class	SequenceFileGroupImporter Special importer able to group a list of path (SequenceFileSticher.SequenceFileGroup) to build a single Sequence out of it.

Fields in icy.file declared as SequenceFileImporter

Modifier and Type	Field and Description
SequenceFileImporter	SequenceFileSticher.SequenceIdent.importer Compatible importer capable of loading this image group

Methods in icy.file with type parameters of type SequenceFileImporter

Modifier and Type	Method and Description
static <T extends SequenceFileImporter> T	Loader.getSequenceFileImporter(java.util.List<T> importers, java.lang.String path, boolean useFirstFound) Returns the appropriate sequence file importer for the specified path.
static <T extends SequenceFileImporter> java.util.Map<T,java.util.List<java.lang.String>>	Loader.getSequenceFileImporters(java.util.List<T> importers, java.util.List<java.lang.String> paths, boolean useFirstFound) Returns a Map containing the appropriate sequence file importer for the specified list of file path.
static <T extends SequenceFileImporter> java.util.List<T>	Loader.getSequenceFileImporters(java.util.List<T> importers, java.lang.String path) Returns all sequence file importer which can open the specified path.
static <T extends SequenceFileImporter> T	Loader.selectSequenceFileImporter(java.util.List<T> importers, java.lang.String path) Display a dialog to let the user select the appropriate sequence file importer for the given file path.

Methods in icy.file that return SequenceFileImporter

Modifier and Type	Method and Description
SequenceFileImporter	SequenceFileGroupImporter.getImporter(java.lang.String path) Return an opened importer for given path.
static SequenceFileImporter	Loader.getSequenceFileImporter(java.util.List<SequenceFileImporter> importers, java.lang.String path) Deprecated. Use Loader.getSequenceFileImporter(List, String, boolean)
static SequenceFileImporter	Loader.getSequenceFileImporter(java.lang.String path) Deprecated. Use Loader.getSequenceFileImporter(String, boolean)
static SequenceFileImporter	Loader.getSequenceFileImporter(java.lang.String path, boolean useFirstFound) Returns the appropriate sequence file importer for the specified file path.

Methods in icy.file that return types with arguments of type SequenceFileImporter

Modifier and Type	Method and Description
static java.util.List<SequenceFileImporter>	Loader.getSequenceFileImporters() Returns all available sequence importer which take file as input.
static java.util.Map<SequenceFileImporter,java.util.List<java.lang.String>>	Loader.getSequenceFileImporters(java.util.List<java.lang.String> paths, boolean useFirstFound) Returns a Map containing the appropriate sequence file importer for the specified list of file path.
static java.util.Map<SequenceFileImporter,java.util.List<java.lang.String>>	Loader.getSequenceFileImporters(SequenceFileImporter defaultImporter, java.util.List<java.lang.String> paths, boolean grouped, boolean useFirstFound) Returns a Map containing the appropriate sequence file importer for the specified file.
static java.util.List<SequenceFileImporter>	Loader.getSequenceFileImporters(java.lang.String path) Returns all sequence file importer which can open the specified file path.

Methods in icy.file with parameters of type SequenceFileImporter

Modifier and Type	Method and Description
static loci.formats.ome.OMEXMLMetadataImpl	Loader.getMetaData(SequenceFileImporter importer, java.lang.String path) Deprecated. Use Loader.getOMEXMLMetaData(SequenceFileImporter, String) instead.
static ome.xml.meta.OMEXMLMetadata	Loader.getOMEXMLMetaData(SequenceFileImporter importer, java.lang.String path) Loads and returns metadata of the specified image file with given importer.
static java.util.Map<SequenceFileImporter,java.util.List<java.lang.String>>	Loader.getSequenceFileImporters(SequenceFileImporter defaultImporter, java.util.List<java.lang.String> paths, boolean grouped, boolean useFirstFound) Returns a Map containing the appropriate sequence file importer for the specified file.
static java.util.List<java.lang.String>	Loader.getSupportedFiles(SequenceFileImporter importer, java.util.List<java.lang.String> paths) Returns path which are supported by the specified imported for the given list of paths.
static java.util.Collection<SequenceFileSticher.SequenceFileGroup>	SequenceFileSticher.groupAllFiles(SequenceFileImporter importer, java.util.Collection<java.lang.String> paths, boolean findPosition, FileFrame loadingFrame) Same as SequenceFileSticher.groupFiles(SequenceFileImporter, Collection, boolean, FileFrame) except it does several groups if all image file path cannot be grouped to form a single Sequence.
static SequenceFileSticher.SequenceFileGroup	SequenceFileSticher.groupFiles(SequenceFileImporter importer, java.util.Collection<java.lang.String> paths, boolean findPosition, FileFrame loadingFrame) Take a list of image file path as input and try to group them to form a unique Sequence.
static void	Loader.load(SequenceFileImporter importer, java.util.List<java.lang.String> paths, boolean separate, boolean autoOrder, boolean showProgress) Load the specified image files with the given SequenceFileImporter.
static void	Loader.load(SequenceFileImporter importer, java.lang.String path, int series, int resolution, java.awt.Rectangle region, int minZ, int maxZ, int minT, int maxT, int channel, boolean separate, boolean addToRecent, boolean showProgress) Load the specified image file with the given SequenceFileImporter.
static void	Loader.load(SequenceFileImporter importer, java.lang.String path, int series, int resolution, java.awt.Rectangle region, int minZ, int maxZ, int minT, int maxT, int channel, boolean forceVolatile, boolean separate, boolean addToRecent, boolean showProgress) Load the specified image file with the given SequenceFileImporter.
static IcyBufferedImage	Loader.loadImage(SequenceFileImporter importer, java.lang.String path, int series, int z, int t) Load and return the image at given position from the specified file path.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.util.List<java.lang.String> paths, boolean showProgress) Load a sequence from the specified list of file and returns it.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.util.List<java.lang.String> paths, boolean addToRecent, boolean showProgress) Load a sequence from the specified list of file and returns it.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.util.List<java.lang.String> paths, int resolution, java.awt.Rectangle region, int minZ, int maxZ, int minT, int maxT, int channel, boolean forceVolatile, boolean directory, boolean addToRecent, boolean showProgress) Load a sequence from the specified list of file and returns it.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.lang.String path, int series, boolean showProgress) Load a sequence from the specified file.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.lang.String path, int series, boolean addToRecent, boolean showProgress) Loads the specified image file and return it as a Sequence, it can return null if an error occured.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.lang.String path, int series, int resolution, java.awt.Rectangle region, int minZ, int maxZ, int minT, int maxT, int channel, boolean addToRecent, boolean showProgress) Loads the specified image file and return it as a Sequence, it can return null if an error occured.
static Sequence	Loader.loadSequence(SequenceFileImporter importer, java.lang.String path, int series, int resolution, java.awt.Rectangle region, int minZ, int maxZ, int minT, int maxT, int channel, boolean forceVolatile, boolean addToRecent, boolean showProgress) Loads the specified image file and return it as a Sequence, it can return null if an error occured.
static java.util.List<Sequence>	Loader.loadSequences(SequenceFileImporter importer, java.util.List<java.lang.String> paths, int series, boolean separate, boolean autoOrder, boolean addToRecent, boolean showProgress) Load a list of sequence from the specified list of file with the given SequenceFileImporter and returns them.
static java.util.List<Sequence>	Loader.loadSequences(SequenceFileImporter importer, java.util.List<java.lang.String> paths, int series, boolean forceVolatile, boolean separate, boolean autoOrder, boolean addToRecent, boolean showProgress) Load a list of sequence from the specified list of file with the given SequenceFileImporter and returns them.
static IcyBufferedImage	Loader.loadThumbnail(SequenceFileImporter importer, java.lang.String path, int series) Returns a thumbnail of the specified image file path.
void	SequenceFileGroupImporter.releaseImporter(java.lang.String path, SequenceFileImporter importer) Release the importer obtained through SequenceFileGroupImporter.getImporter(String) to the importer pool.
static int	Loader.selectSerie(SequenceFileImporter importer, java.lang.String path, loci.formats.ome.OMEXMLMetadataImpl meta, int defaultSerie) Deprecated. Use Loader.selectSerie(SequenceFileImporter, String, OMEXMLMetadata, int) instead
static int	Loader.selectSerie(SequenceFileImporter importer, java.lang.String path, ome.xml.meta.OMEXMLMetadata meta, int defaultSerie) Display the Series Selection frame for the given image and return the selected series (single selection).
static int[]	Loader.selectSeries(SequenceFileImporter importer, java.lang.String path, loci.formats.ome.OMEXMLMetadataImpl meta, int defaultSerie, boolean singleSelection) Display the Series Selection frame for the given image and returns selected series(s).
static int[]	Loader.selectSeries(SequenceFileImporter importer, java.lang.String path, ome.xml.meta.OMEXMLMetadata meta, int defaultSerie, boolean singleSelection) Display the Series Selection frame for the given image and returns selected series(s).

Method parameters in icy.file with type arguments of type SequenceFileImporter

Modifier and Type	Method and Description
static SequenceFileImporter	Loader.getSequenceFileImporter(java.util.List<SequenceFileImporter> importers, java.lang.String path) Deprecated. Use Loader.getSequenceFileImporter(List, String, boolean)

Constructors in icy.file with parameters of type SequenceFileImporter

Constructor and Description
SequenceFileSticher.SequenceIdent(java.lang.String base, int series, SequenceFileSticher.SequenceType type, SequenceFileImporter importer)

Uses of SequenceFileImporter in icy.gui.dialog

Constructors in icy.gui.dialog with parameters of type SequenceFileImporter

Constructor and Description
SeriesSelectionDialog(SequenceFileImporter importer, java.lang.String id) Create a new dialog to select the series to open from an image.
SeriesSelectionDialog(SequenceFileImporter importer, java.lang.String id, ome.xml.meta.OMEXMLMetadata metadata) Create a new dialog to select the series to open from an image.
SeriesSelectionDialog(SequenceFileImporter importer, java.lang.String id, ome.xml.meta.OMEXMLMetadata metadata, boolean singleSelection)
SeriesSelectionDialog(SequenceFileImporter importer, java.lang.String id, loci.formats.ome.OMEXMLMetadataImpl metadata) Deprecated. Use SeriesSelectionDialog.SeriesSelectionDialog(SequenceFileImporter, String, OMEXMLMetadata) instead.

Uses of SequenceFileImporter in icy.plugin.abstract_

Classes in icy.plugin.abstract_ that implement SequenceFileImporter

Modifier and Type	Class and Description
class	PluginSequenceFileImporter Plugin specialized for Sequence file import operation (see the SequenceFileImporter interface)

Uses of SequenceFileImporter in plugins.kernel.importer

Classes in plugins.kernel.importer that implement SequenceFileImporter

Modifier and Type	Class and Description
class	LociImporterPlugin LOCI Bio-Formats library importer class.