Deprecated List

Deprecated Interfaces
Interface and Description
icy.common.AcceptListener Use `AcceptListener` instead
icy.painter.Anchor2D.Anchor2DListener Use `Anchor2D.Anchor2DPositionListener` listener or `OverlayListener`
icy.common.EventHierarchicalChecker Replaced by the `CollapsibleEvent`
icy.common.Filter use `AcceptListener` instead
icy.gui.main.FocusedSequenceListener Use `ActiveSequenceListener` instead.
icy.gui.main.FocusedViewerListener Use `ActiveViewerListener` instead.
icy.common.IcyChangedListener Use `ChangeListener` instead
icy.image.lut.LUTBandListener
icy.gui.main.MainListener Use one of these interface instead: `GlobalViewerListener` `GlobalSequenceListener` `GlobalROIListener` `GlobalOverlayListener` `GlobalPluginListener`
icy.common.NotifyListener Use `NotifyListener` instead
icy.painter.Painter Prefer the `Overlay` class to this interface when possible.
icy.painter.PainterListener Use `Overlay` and `OverlayListener` classes instead.
icy.plugin.interface_.PluginExporter Use #PluginSequenceExporter
icy.plugin.interface_.PluginImageAnalysis Use `PluginActionable` instead.
icy.plugin.interface_.PluginImageFilter
icy.plugin.interface_.PluginImporter Use `PluginImporter` instead.
icy.plugin.interface_.PluginStartAsThread Use `PluginThreaded` or `PluginNoEDTConstructor` instead
icy.system.thread.Processor.ProcessorEventListener Useless interface
icy.common.ProgressListener Use `ProgressListener` instead

Deprecated Classes
Class and Description
icy.painter.AbstractPainter Uses the `Overlay` class instead.
icy.type.collection.array.ArrayDataType Use `ArrayType` instead
icy.type.ArrayTypeInfo use `ArrayDataType` instead
icy.system.thread.BackgroundProcessor
icy.image.BandPosition Use `ChannelPosition` instead.
icy.canvas.Canvas3D Use `VtkCanvas` instead.
icy.gui.component.CloseTabbedPane Use `CloseableTabbedPane` instead
icy.gui.component.ComponentUtil Use `ComponentUtil` instead.
icy.system.CPUMonitor
icy.gui.frame.sequence.FocusedSequenceActionFrame Use `ActiveSequenceActionFrame` instead.
icy.gui.component.FontUtil Use `FontUtil` instead.
icy.gui.math.HistogramPanel Use `HistogramPanel` instead.
icy.common.IcyAbstractAction Use `IcyAbstractAction` instead.
icy.image.colormap.IcyColorMapBand Use `IcyColorMapComponent` instead.
icy.gui.lut.abstract_.IcyColormapPanel
icy.gui.component.IcyLogo Don't use this anymore...
icy.gui.lut.abstract_.IcyLutBandViewer
icy.gui.lut.abstract_.IcyLutViewer
icy.gui.component.IcyPanel Don't use this fancy background panel anymore...
icy.gui.lut.abstract_.IcyScalerPanel
icy.vtk.IcyVtkPanelOld Use `IcyVtkPanel` instead
icy.system.thread.IdProcessor Use `InstanceProcessor` instead.
icy.gui.dialog.ImageLoaderDialog Use `LoaderDialog` instead.
icy.gui.dialog.ImageLoaderDialog.AllImageFileFilter
icy.gui.dialog.ImageLoaderDialog.AllImagesFileFilter Use `LoaderDialog.AllImagesFileFilter` instead.
icy.gui.dialog.ImageSaverDialog Use `SaveDialog` instead.
icy.gui.dialog.IncompatibleImageFormatDialog Not anymore used.
icy.gui.frame.LabelFrame Don't use this anymore
icy.type.geom.Line2DUtil Use `GeomUtil` instead
icy.gui.dialog.LoadDialog Use `OpenDialog` instead.
icy.file.Loader.FilePosition Use `SequenceFileSticher.groupFiles(SequenceFileImporter, Collection, boolean, FileFrame)` instead
icy.image.lut.LUTBand Use `LUT.LUTChannel` instead.
icy.image.lut.LUTBandEvent
icy.gui.main.MainAdaptater Use one of these interface instead: `GlobalViewerListener` `GlobalSequenceListener` `GlobalROIListener` `GlobalOverlayListener` `GlobalPluginListener`
icy.gui.main.MainAdapter Use one of these interface instead: `GlobalViewerListener` `GlobalSequenceListener` `GlobalROIListener` `GlobalOverlayListener` `GlobalPluginListener`
icy.gui.main.MainEvent Use `GlobalOverlayListener`, `GlobalPluginListener`, `GlobalROIListener`, `GlobalSequenceListener` and `GlobalViewerListener` interface instead.
icy.painter.PainterAdapter Use `Overlay` class instead.
icy.painter.PainterEvent Use `Overlay` classes instead.
icy.gui.plugin.PluginErrorReportFrame Use `ErrorReportFrame` instead.
icy.gui.plugin.PluginErrorReportPanel Use `ErrorReportFrame` instead
icy.common.Random Use `Random` instead
icy.roi.ROI2DArea Use `ROI2DArea` instead.
icy.roi.ROI2DArea.ROI2DAreaPainter Use `ROI2DArea.ROI2DAreaPainter` instead.
icy.roi.ROI2DEllipse Use `ROI2DEllipse` instead.
icy.roi.ROI2DLine Use `ROI2DLine` instead.
icy.roi.ROI2DPath Use `ROI2DPath` instead.
icy.roi.ROI2DPoint Use `ROI2DPoint` instead.
icy.roi.ROI2DPolygon Use `ROI2DPolygon` instead.
icy.roi.ROI2DPolyLine Use `ROI2DPolyLine` instead.
icy.roi.ROI2DRectangle Use `ROI2DRectangle` instead.
icy.roi.ROI2DRectShape Use `ROI2DRectShape` instead.
icy.roi.ROI2DShape Use `ROI2DShape` instead.
icy.gui.component.SequenceChooser Use `SequenceChooser` instead.
icy.gui.menu.tools.SequenceCropper Use `SequenceUtil.getSubSequence(Sequence, ROI)` instead.
icy.system.thread.SingleIdProcessor Use `InstanceProcessor` instead
icy.system.thread.SingleInstanceProcessor Use `InstanceProcessor` instead
icy.gui.menu.ToolRibbonTask Use `ROITask` instead.
icy.gui.main.WeakMainListener Use one of these interface instead: `GlobalViewerListener` `GlobalSequenceListener` `GlobalROIListener` `GlobalOverlayListener` `GlobalPluginListener`
icy.file.xls.XlsManager Use `XLSUtil` instead.

Deprecated Enums
Enum and Description
icy.file.FileFormat Use `ImageFileFormat` instead.
icy.image.IcyBufferedImage.FilterType Use `IcyBufferedImageUtil.FilterType` instead.
icy.image.colorspace.IcyColorSpaceEvent.IcyColorSpaceEventType
icy.roi.ROIEvent.ROIPointEventType
icy.math.ScalerEvent.ScalerEventType
icy.util.ShapeUtil.ShapeOperation Use `ShapeUtil.BooleanOperator` instead.
icy.vtk.VtkImageVolume.VtkVolumeMapperType

Deprecated Fields
Field and Description
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.CONTENT_ALPHA Use `ROI.ROIPainter.getOpacity()` instead.
icy.roi.ROI.DEFAULT_NORMAL_COLOR Use `ROI.DEFAULT_COLOR` instead.
icy.action.SequenceOperationActions.fillSequenceAction Use `RoiActions.fillInteriorAction` instead
icy.resource.ResourceUtil.ICON_ARROW_BOTTOM Use `ResourceUtil.ICON_ARROW_DOWN` instead.
icy.resource.ResourceUtil.ICON_ARROW_TOP Use `ResourceUtil.ICON_ARROW_UP` instead.
icy.resource.ResourceUtil.ICON_COLLAPSE Use `ResourceUtil.ICON_WINDOW_COLLAPSE` instead.
icy.resource.ResourceUtil.ICON_DOCCOPY Use `ResourceUtil.ICON_DOC_COPY` instead.
icy.resource.ResourceUtil.ICON_DOCEXPORT Use `ResourceUtil.ICON_DOC_EXPORT` instead.
icy.resource.ResourceUtil.ICON_DOCIMPORT Use `ResourceUtil.ICON_DOC_IMPORT` instead.
icy.resource.ResourceUtil.ICON_EXPAND Use `ResourceUtil.ICON_WINDOW_EXPAND` instead.
icy.resource.ResourceUtil.ICON_NEWDOC Use `ResourceUtil.ICON_DOC_NEW` instead.
icy.plugin.PluginDescriptor.ID_CLASSNAME Use `PluginDescriptor.PluginIdent.ID_CLASSNAME` instead
icy.plugin.PluginDescriptor.ID_REQUIRED_KERNEL_VERSION Use `PluginDescriptor.PluginIdent.ID_REQUIRED_KERNEL_VERSION` instead
icy.gui.menu.ROITask.MOVE Use `ROITask.setSelected(String)` with `null` parameter instead.
icy.canvas.Layer.PROPERTY_ALPHA Use `Layer.PROPERTY_OPACITY` instead
plugins.kernel.roi.roi3d.ROI3DStack.PROPERTY_USECHILDCOLOR this property does not exist anymore
icy.gui.menu.ROITask.SELECT Use `ROITask.setSelected(String)` with `null` parameter instead.
icy.image.IcyBufferedImage.TYPE_BYTE
icy.type.TypeUtil.TYPE_BYTE use `DataType.BYTE` instead
icy.sequence.Sequence.TYPE_BYTE
icy.image.IcyBufferedImage.TYPE_DOUBLE
icy.type.TypeUtil.TYPE_DOUBLE use `DataType.DOUBLE` instead
icy.sequence.Sequence.TYPE_DOUBLE
icy.image.IcyBufferedImage.TYPE_FLOAT
icy.type.TypeUtil.TYPE_FLOAT use `DataType.FLOAT` instead
icy.sequence.Sequence.TYPE_FLOAT
icy.image.IcyBufferedImage.TYPE_INT
icy.type.TypeUtil.TYPE_INT use `DataType.INT` instead
icy.sequence.Sequence.TYPE_INT
icy.image.IcyBufferedImage.TYPE_SHORT
icy.type.TypeUtil.TYPE_SHORT use `DataType.SHORT` instead
icy.sequence.Sequence.TYPE_SHORT
icy.image.IcyBufferedImage.TYPE_UNDEFINED
icy.type.TypeUtil.TYPE_UNDEFINED use `DataType.UNDEFINED` instead
icy.sequence.Sequence.TYPE_UNDEFINED

Deprecated Methods
Method and Description
icy.math.ArrayMath.add(double, double[], double[]) use `ArrayMath.add(double[] , double , double[])` instead
icy.plugin.classloader.JarClassLoader.add(InputStream) Not anymore supported (we need URL for getResource(..) method)
icy.util.ShapeUtil.add(Shape, Shape) Use `ShapeUtil.union(Shape, Shape)` instead
icy.vtk.VtkUtil.addActor(vtkRenderer, vtkActor) Use `VtkUtil.addProp(vtkRenderer, vtkProp)` instead.
icy.vtk.VtkUtil.addActor2D(vtkRenderer, vtkActor2D) Use `VtkUtil.addProp(vtkRenderer, vtkProp)` instead.
icy.painter.Anchor2D.addAnchorListener(Anchor2D.Anchor2DListener) Use `Anchor2D.addPositionListener(Anchor2DPositionListener)` or `Overlay.addOverlayListener(OverlayListener)` instead.
icy.gui.main.MainInterfaceGui.addFocusedSequenceListener(FocusedSequenceListener)
icy.gui.main.MainInterfaceBatch.addFocusedSequenceListener(FocusedSequenceListener)
icy.gui.main.MainInterface.addFocusedSequenceListener(FocusedSequenceListener) Use `MainInterface.addActiveSequenceListener(ActiveSequenceListener)` instead.
icy.gui.main.MainInterfaceGui.addFocusedViewerListener(FocusedViewerListener)
icy.gui.main.MainInterfaceBatch.addFocusedViewerListener(FocusedViewerListener)
icy.gui.main.MainInterface.addFocusedViewerListener(FocusedViewerListener) Use `MainInterface.addActiveViewerListener(ActiveViewerListener)` instead.
icy.canvas.IcyCanvas.addLayer(Painter) Use `IcyCanvas.addLayer(Overlay)` instead.
icy.canvas.IcyCanvas.addLayersListener(CanvasLayerListener) Use `IcyCanvas.addLayerListener(CanvasLayerListener)` instead.
icy.painter.Anchor2D.addListener(Anchor2D.Anchor2DListener) Use `Anchor2D.addPositionListener(Anchor2DPositionListener)` or `Overlay.addOverlayListener(OverlayListener)` instead.
icy.gui.main.MainInterfaceGui.addListener(MainListener)
icy.gui.main.MainInterfaceBatch.addListener(MainListener)
icy.gui.main.MainInterface.addListener(MainListener) Use addGlobalXXXListener instead.
icy.system.thread.Processor.addListener(Processor.ProcessorEventListener) Useless...
icy.sequence.Sequence.addPainter(Painter) Use `Sequence.addOverlay(Overlay)` instead.
icy.painter.AbstractPainter.addPainterListener(PainterListener) Use `Overlay.addOverlayListener(OverlayListener)` instead.
plugins.kernel.roi.roi2d.ROI2DShape.addPoint(Point2D, boolean) Use `ROI2DShape.addNewPoint(Point2D, boolean)` instead.
plugins.kernel.roi.roi2d.ROI2DShape.addPointAt(Point2D, boolean) Use `ROI2DShape.addNewPoint(Point2D, boolean)` instead.
plugins.kernel.roi.roi2d.ROI2DArea.addPointAt(Point2D, boolean) Use `ROI2DArea.addBrush(Point2D)` instead.
icy.main.Icy.addSequence(Sequence) Uses `Icy.getMainInterface().addSequence(Sequence)` instead.
icy.system.thread.Processor.addTask(Runnable) Use `Processor.submit(Runnable)` instead.
icy.system.thread.Processor.addTask(Runnable, boolean) Use `Processor.submit(Runnable)` instead.
icy.system.thread.Processor.addTask(Runnable, boolean, int) Use `Processor.submit(Runnable)` instead.
icy.gui.frame.IcyFrame.addTo(Container, Object) Use `IcyFrame.addToDesktopPane()` instead.
icy.gui.frame.IcyFrame.addToMainDesktopPane() Use `IcyFrame.addToDesktopPane()` instead.
icy.gui.component.math.HistogramPanel.addValue(double) Use `getHistogram.addValue(double)` instead.
icy.gui.component.math.HistogramPanel.addValues(byte[], boolean) Use `getHistogram.addValue(byte[])` instead.
icy.gui.component.math.HistogramPanel.addValues(double[]) Use `getHistogram.addValue(double[])` instead.
icy.gui.component.math.HistogramPanel.addValues(float[]) Use `getHistogram.addValue(float[])` instead.
icy.gui.component.math.HistogramPanel.addValues(int[], boolean) Use `getHistogram.addValue(int[])` instead.
icy.gui.component.math.HistogramPanel.addValues(long[], boolean) Use `getHistogram.addValue(long[])` instead.
icy.gui.component.math.HistogramPanel.addValues(Object, boolean) Use `getHistogram.addValue(Object, boolean signed)` instead.
icy.gui.component.math.HistogramPanel.addValues(short[], boolean) Use `getHistogram.addValue(short[])` instead.
icy.canvas.IcyCanvas.addViewerToolbarComponents(JToolBar) Use `IcyCanvas.customizeToolbar(JToolBar)` instead.
icy.type.collection.array.ArrayUtil.arrayToByteArray1D(Object) use Array1DUtil.arrayToByteArray instead
icy.type.collection.array.ArrayUtil.arrayToByteArray1D(Object, byte[]) use Array1DUtil.arrayToByteArray instead
icy.type.collection.array.ArrayUtil.arrayToByteArray1D(Object, int, byte[], int, int) use Array1DUtil.arrayToByteArray instead
icy.type.collection.array.ArrayUtil.arrayToByteArray2D(Object) use Array2DUtil.arrayToByteArray instead
icy.type.collection.array.ArrayUtil.arrayToByteArray2D(Object, byte[][]) use Array2DUtil.arrayToByteArray instead
icy.type.collection.array.ArrayUtil.arrayToByteArray2D(Object, int, byte[][], int, int) use Array2DUtil.arrayToByteArray instead
icy.type.collection.array.ArrayUtil.arrayToDoubleArray1D(Object, boolean) use Array1DUtil.arrayToDoubleArray instead
icy.type.collection.array.ArrayUtil.arrayToDoubleArray1D(Object, double[], boolean) use Array1DUtil.arrayToDoubleArray instead
icy.type.collection.array.ArrayUtil.arrayToDoubleArray1D(Object, int, double[], int, int, boolean) use Array1DUtil.arrayToDoubleArray instead
icy.type.collection.array.ArrayUtil.arrayToDoubleArray2D(Object, boolean) use Array2DUtil.arrayToDoubleArray instead
icy.type.collection.array.ArrayUtil.arrayToDoubleArray2D(Object, double[][], boolean) use Array2DUtil.arrayToDoubleArray instead
icy.type.collection.array.ArrayUtil.arrayToDoubleArray2D(Object, int, double[][], int, int, boolean) use Array2DUtil.arrayToDoubleArray instead
icy.type.collection.array.ArrayUtil.arrayToFloatArray1D(Object, boolean) use Array1DUtil.arrayToFloatArray instead
icy.type.collection.array.ArrayUtil.arrayToFloatArray1D(Object, float[], boolean) use Array1DUtil.arrayToFloatArray instead
icy.type.collection.array.ArrayUtil.arrayToFloatArray1D(Object, int, float[], int, int, boolean) use Array1DUtil.arrayToFloatArray instead
icy.type.collection.array.ArrayUtil.arrayToFloatArray2D(Object, boolean) use Array2DUtil.arrayToFloatArray instead
icy.type.collection.array.ArrayUtil.arrayToFloatArray2D(Object, float[][], boolean) use Array2DUtil.arrayToFloatArray instead
icy.type.collection.array.ArrayUtil.arrayToFloatArray2D(Object, int, float[][], int, int, boolean) use Array2DUtil.arrayToFloatArray instead
icy.type.collection.array.ArrayUtil.arrayToIntArray1D(Object, boolean) use Array1DUtil.arrayToIntArray instead
icy.type.collection.array.ArrayUtil.arrayToIntArray1D(Object, int[], boolean) use Array1DUtil.arrayToIntArray instead
icy.type.collection.array.ArrayUtil.arrayToIntArray1D(Object, int, int[], int, int, boolean) use Array1DUtil.arrayToIntArray instead
icy.type.collection.array.ArrayUtil.arrayToIntArray2D(Object, boolean) use Array2DUtil.arrayToIntArray instead
icy.type.collection.array.ArrayUtil.arrayToIntArray2D(Object, int[][], boolean) use Array2DUtil.arrayToIntArray instead
icy.type.collection.array.ArrayUtil.arrayToIntArray2D(Object, int, int[][], int, int, boolean) use Array2DUtil.arrayToIntArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeArray(Object, int, Object, int, int, boolean) Use `ArrayUtil.arrayToSafeArray(Object, int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.ArrayUtil.arrayToSafeArray(Object, Object, boolean) Use `ArrayUtil.arrayToSafeArray(Object, Object, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.arrayToSafeByteArray(Object, byte[][], boolean) Use `Array2DUtil.arrayToSafeByteArray(Object, byte[][], boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeByteArray(Object, byte[], boolean) Use `Array1DUtil.arrayToSafeByteArray(Object, byte[], boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.arrayToSafeByteArray(Object, int, byte[][], int, int, boolean) Use `Array2DUtil.arrayToSafeByteArray(Object, int, byte[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeByteArray(Object, int, byte[], int, int, boolean) Use `Array1DUtil.arrayToSafeByteArray(Object, int, byte[], int, int, boolean, boolean)` instead.
icy.type.collection.array.ArrayUtil.arrayToSafeByteArray1D(Object, byte[], boolean) use Array1DUtil.arrayToSafeByteArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeByteArray1D(Object, int, byte[], int, int, boolean) use Array1DUtil.arrayToSafeByteArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeByteArray2D(Object, byte[][], boolean) use Array2DUtil.arrayToSafeByteArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeByteArray2D(Object, int, byte[][], int, int, boolean) use Array2DUtil.arrayToSafeByteArray instead
icy.type.collection.array.Array2DUtil.arrayToSafeIntArray(Object, int[][], boolean) Use `Array2DUtil.arrayToSafeIntArray(Object, int[][], boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeIntArray(Object, int[], boolean) Use `Array1DUtil.arrayToSafeIntArray(Object, int[], boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.arrayToSafeIntArray(Object, int, int[][], int, int, boolean) Use `Array2DUtil.arrayToSafeIntArray(Object, int, int[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeIntArray(Object, int, int[], int, int, boolean) Use `Array1DUtil.arrayToSafeIntArray(Object, int, int[], int, int, boolean, boolean)` instead.
icy.type.collection.array.ArrayUtil.arrayToSafeIntArray1D(Object, int[], boolean) use Array1DUtil.arrayToSafeIntArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeIntArray1D(Object, int, int[], int, int, boolean) use Array1DUtil.arrayToSafeIntArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeIntArray2D(Object, int[][], boolean) use Array2DUtil.arrayToSafeIntArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeIntArray2D(Object, int, int[][], int, int, boolean) use Array2DUtil.arrayToSafeIntArray instead
icy.type.collection.array.Array2DUtil.arrayToSafeLongArray(Object, int, long[][], int, int, boolean) Use `Array2DUtil.arrayToSafeLongArray(Object, int, long[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeLongArray(Object, int, long[], int, int, boolean) Use `Array1DUtil.arrayToSafeLongArray(Object, int, long[], int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.arrayToSafeLongArray(Object, long[][], boolean) Use `Array2DUtil.arrayToSafeLongArray(Object, long[][], boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeLongArray(Object, long[], boolean) Use `Array1DUtil.arrayToSafeLongArray(Object, long[], boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.arrayToSafeShortArray(Object, int, short[][], int, int, boolean) Use `Array2DUtil.arrayToSafeShortArray(Object, int, short[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeShortArray(Object, int, short[], int, int, boolean) Use `Array1DUtil.arrayToSafeShortArray(Object, int, short[], int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.arrayToSafeShortArray(Object, short[][], boolean) Use `Array2DUtil.arrayToSafeShortArray(Object, short[][], boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.arrayToSafeShortArray(Object, short[], boolean) Use `Array1DUtil.arrayToSafeShortArray(Object, short[], boolean, boolean)` instead.
icy.type.collection.array.ArrayUtil.arrayToSafeShortArray1D(Object, int, short[], int, int, boolean) use Array1DUtil.arrayToSafeShortArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeShortArray1D(Object, short[], boolean) use Array1DUtil.arrayToSafeShortArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeShortArray2D(Object, int, short[][], int, int, boolean) use Array2DUtil.arrayToSafeShortArray instead
icy.type.collection.array.ArrayUtil.arrayToSafeShortArray2D(Object, short[][], boolean) use Array2DUtil.arrayToSafeShortArray instead
icy.type.collection.array.ArrayUtil.arrayToShortArray1D(Object, boolean) use Array1DUtil.arrayToShortArray instead
icy.type.collection.array.ArrayUtil.arrayToShortArray1D(Object, int, short[], int, int, boolean) use Array1DUtil.arrayToShortArray instead
icy.type.collection.array.ArrayUtil.arrayToShortArray1D(Object, short[], boolean) use Array1DUtil.arrayToShortArray instead
icy.type.collection.array.ArrayUtil.arrayToShortArray2D(Object, boolean) use Array2DUtil.arrayToShortArray instead
icy.type.collection.array.ArrayUtil.arrayToShortArray2D(Object, int, short[][], int, int, boolean) use Array2DUtil.arrayToShortArray instead
icy.type.collection.array.ArrayUtil.arrayToShortArray2D(Object, short[][], boolean) use Array2DUtil.arrayToShortArray instead
icy.roi.ROI.attachTo(Sequence) use `Sequence.addROI(ROI)` instead
icy.painter.Overlay.attachTo(Sequence) Use `Sequence.addOverlay(Overlay)` instead.
icy.painter.AbstractPainter.attachTo(Sequence) Use `Sequence.addPainter(Painter)` instead.
icy.gui.main.MainInterfaceGui.beginUpdate()
icy.gui.main.MainInterfaceBatch.beginUpdate()
icy.gui.main.MainInterface.beginUpdate()
icy.system.thread.ThreadUtil.bgRun(Callable, boolean) Use `ThreadUtil.bgRun(Callable)` and `ThreadUtil.invokeNow(Callable)` separately instead.
icy.system.thread.BackgroundProcessor.bgRun(Runnable) Use `ThreadUtil.bgRun(Runnable)` instead
icy.system.thread.ThreadUtil.bgRun(Runnable, boolean) Use `ThreadUtil.bgRun(Runnable)` instead and `ThreadUtil.invokeNow(Runnable)` separately.
icy.system.thread.BackgroundProcessor.bgRun(Runnable, boolean) Use `ThreadUtil.bgRun(Runnable, boolean)` instead
icy.system.thread.ThreadUtil.bgRunSingle(Callable, boolean) Use `ThreadUtil.runSingle(Callable)` and `ThreadUtil.invokeNow(Callable)` separately instead.
icy.system.thread.ThreadUtil.bgRunSingle(Runnable, boolean) Use `ThreadUtil.runSingle(Runnable)` instead and `ThreadUtil.invokeNow(Runnable)` separately.
icy.system.thread.ThreadUtil.bgRunWait(Runnable) Use `ThreadUtil.bgRun(Runnable)` instead and check for acceptance.
icy.system.thread.BackgroundProcessor.bgRunWait(Runnable) Use `ThreadUtil.bgRunWait(Runnable)` instead
icy.type.collection.array.ByteArrayConvert.byteArrayTo(byte[], int, boolean) use `ByteArrayConvert.byteArrayTo(byte[], DataType , boolean )` instead
icy.type.collection.array.ByteArrayConvert.byteArrayTo(byte[], int, int, int, boolean) use `ByteArrayConvert.byteArrayTo(byte[], int , DataType , int , boolean )` instead
icy.type.collection.array.ArrayUtil.byteArrayToArray1D(byte[], int, Object, int, int, boolean) use Array1DUtil.byteArrayToArray instead
icy.type.collection.array.ArrayUtil.byteArrayToArray2D(byte[][], int, Object, int, int, boolean) use Array2DUtil.byteArrayToArray instead
icy.type.collection.array.ArrayUtil.byteArrayToArray2D(byte[][], Object, boolean) use Array2DUtil.byteArrayToArray instead
plugins.kernel.roi.roi2d.ROI2DArea.canAddPoint() useless method.
plugins.kernel.roi.roi2d.ROI2DArea.canRemovePoint() useless method.
icy.canvas.IcyCanvas.canvasToImageC(int) Cannot give correct result if rotation is applied so use IcyCanvasXD.canvasToImage(...) instead
icy.roi.ROI.canvasToImageDeltaX(IcyCanvas, int) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageDeltaY(IcyCanvas, int) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaX(IcyCanvas, double) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaX(IcyCanvas, double, double) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaX(IcyCanvas, int) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaX(IcyCanvas, int, double) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaY(IcyCanvas, double) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaY(IcyCanvas, double, double) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaY(IcyCanvas, int) Use `IcyCanvas` methods instead
icy.roi.ROI.canvasToImageLogDeltaY(IcyCanvas, int, double) Use `IcyCanvas` methods instead
icy.canvas.IcyCanvas.canvasToImageT(int) Cannot give correct result if rotation is applied so use IcyCanvasXD.canvasToImage(...) instead
icy.canvas.IcyCanvas.canvasToImageX(int) Cannot give correct result if rotation is applied so use IcyCanvasXD.canvasToImage(...) instead
icy.canvas.IcyCanvas.canvasToImageY(int) Cannot give correct result if rotation is applied so use IcyCanvasXD.canvasToImage(...) instead
icy.canvas.IcyCanvas.canvasToImageZ(int) Cannot give correct result if rotation is applied so use IcyCanvasXD.canvasToImage(...) instead
icy.gui.util.ComponentUtil.center(IcyFrame)
icy.painter.Overlay.changed() Use `Overlay.painterChanged()` instead.
icy.plugin.PluginUpdater.checkUpdate(boolean, boolean) Use `PluginUpdater.checkUpdate(boolean)` instead
icy.update.IcyUpdater.checkUpdate(boolean, boolean) Use `IcyUpdater.checkUpdate(boolean)` instead
icy.gui.dialog.LoadDialog.chooseFile() Use `OpenDialog.chooseFile()` instead
icy.gui.dialog.LoadDialog.chooseFile(String, String) Use `OpenDialog.chooseFile(String, String)` instead
icy.gui.dialog.LoadDialog.chooseFile(String, String, String) Use `OpenDialog.chooseFile(String, String, String)` instead
icy.gui.dialog.LoadDialog.chooseFile(String, String, String, String) Use `OpenDialog.chooseFile(String, String, String, String)` instead
icy.sequence.MetaDataUtil.clean(OMEXMLMetadataImpl) Use `MetaDataUtil.clean(OMEXMLMetadata)` instead.
icy.gui.main.MainInterfaceGui.closeViewersOfSequence(Sequence)
icy.gui.main.MainInterfaceBatch.closeViewersOfSequence(Sequence)
icy.gui.main.MainInterface.closeViewersOfSequence(Sequence) Use `MainInterface.closeSequence(Sequence)` instead.
icy.image.IcyBufferedImage.componentBoundsChanged(int) Use `IcyBufferedImage.channelBoundsChanged(int)` instead.
icy.plugin.abstract_.PluginActionable.compute() Used to keep backward compatibility with `PluginImageAnalysis` interface. Use `Runnable.run()` instead.
icy.roi.ROIUtil.computeDescriptor(Set, String, ROI, Sequence) Use `ROIDescriptor.computeDescriptor(Collection, String, ROI, Sequence)` instead
icy.roi.ROI2D.computePerimeter(Sequence) Perimeter computation cannot be cached so directly use #getLength(Sequence) instead.
icy.sequence.Sequence.contains(Painter) Use `Sequence.contains(Overlay)` instead.
icy.image.IcyBufferedImage.convert(BufferedImage) use `IcyBufferedImage.createFrom(java.util.List<? extends java.awt.image.BufferedImage>)` instead
icy.image.IcyBufferedImage.convert(List) use `IcyBufferedImage.createFrom(java.util.List<? extends java.awt.image.BufferedImage>)` instead
icy.image.ImageUtil.convertImage(Image, BufferedImage) Use `ImageUtil.convert(Image, BufferedImage)` instead.
icy.image.IcyBufferedImage.convertToBufferedImage(BufferedImage) Uses `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage)` instead.
icy.image.IcyBufferedImage.convertToBufferedImage(BufferedImage, LUT) Uses `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage, LUT)` instead.
icy.image.IcyBufferedImage.convertToBufferedImage(int, LUT) Use `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, int, LUT)` instead
icy.image.IcyBufferedImage.convertToBufferedImage(LUT, int) Use `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, int, LUT)` instead
icy.imagej.ImageJUtil.convertToImageJRoiPoint(List) Use `ImageJUtil.convertToImageJRoi(ROI2D)` instead.
icy.image.IcyBufferedImage.convertToType(DataType, boolean) Uses `IcyBufferedImageUtil.convertToType(IcyBufferedImage, DataType, boolean)` instead.
icy.sequence.Sequence.convertToType(DataType, boolean) Use `SequenceUtil.convertToType(Sequence, DataType, boolean)` instead.
icy.image.IcyBufferedImage.convertToType(DataType, Scaler) Uses `IcyBufferedImageUtil.convertType(IcyBufferedImage, DataType, Scaler[])` instead.
icy.sequence.Sequence.convertToType(DataType, Scaler) Use `SequenceUtil.convertType(Sequence, DataType, Scaler[])` instead.
icy.image.IcyBufferedImageUtil.convertToType(IcyBufferedImage, DataType, Scaler) Use `IcyBufferedImageUtil.convertType(IcyBufferedImage, DataType, Scaler[])` instead.
icy.image.IcyBufferedImage.convertToType(int, boolean, boolean) Uses `IcyBufferedImageUtil.convertToType(IcyBufferedImage,DataType, boolean)` instead
icy.sequence.Sequence.convertToType(int, boolean, boolean) Use `SequenceUtil.convertToType(Sequence, DataType, boolean)` instead
icy.image.IcyBufferedImage.convertToType(int, boolean, Scaler) Uses `IcyBufferedImageUtil.convertType(IcyBufferedImage,DataType, Scaler[])` instead.
icy.sequence.SequenceUtil.convertToType(Sequence, DataType, Scaler) Use `SequenceUtil.convertType(Sequence, DataType, Scaler[])` instead.
icy.sequence.SequenceUtil.convertToVolume(Sequence) Use `SequenceUtil.convertToStack(Sequence)` instead.
icy.file.FileUtil.copy(File, File, boolean, boolean, boolean) Use `FileUtil.copy(File, File, boolean, boolean)` instead
icy.file.FileUtil.copy(String, String, boolean, boolean, boolean) Use `FileUtil.copy(String, String, boolean, boolean)` instead
icy.image.colormodel.IcyColorModel.copyBounds(IcyColorModel) Use `IcyColorModel.setBounds(IcyColorModel)` instead.
icy.image.IcyBufferedImage.copyColormap(BufferedImage) Use `IcyBufferedImage.setColorMaps(BufferedImage)` instead.
icy.image.colormodel.IcyColorModel.copyColormap(ColorModel) Use `IcyColorModel.setColorMaps(ColorModel)` instead.
icy.gui.lut.ColormapPanel.copyColorMap(IcyColorMap) Use `ColormapPanel.setColorMap(IcyColorMap)` instead.
icy.image.lut.LUT.LUTChannel.copyColorMap(IcyColorMap) Use `LUT.LUTChannel.setColorMap(IcyColorMap, boolean)` instead.
icy.image.colorspace.IcyColorSpace.copyColormap(int, IcyColorMap) Use `setColormap(channel, map)` instead.
icy.image.colorspace.IcyColorSpace.copyColormap(int, IcyColorMap, boolean) Use `setColormap(channel, map)` instead.
icy.image.colorspace.IcyColorSpace.copyColormap(int, IcyColorMap, boolean, boolean) Use `setColormap(channel, map)` instead.
icy.image.colorspace.IcyColorSpace.copyColormaps(ColorModel) Use `IcyColorSpace.setColorMaps(ColorModel)` instead.
icy.image.colorspace.IcyColorSpace.copyColormaps(IcyColorSpace) Use `IcyColorSpace.setColorMaps(IcyColorSpace, boolean)` instead.
icy.image.lut.LUT.copyColormaps(LUT) Use `LUT.setColorMaps(LUT, boolean)` instead.
icy.image.lut.LUT.copyScalers(LUT) Use `LUT.setScalers(LUT)` instead.
icy.math.DataIteratorMath.count(DataIterator) Use `DataIteratorUtil.count(DataIterator)` instead.
icy.type.collection.array.DynamicArray.create(int)
icy.roi.ROI.create(String, Point2D) Use `ROI.create(String, Point5D)` instead
icy.roi.ROI.create(String, Sequence, Point2D, boolean) Use `ROI.create(String, Point5D)` instead.
icy.type.collection.array.Array3DUtil.createArray(int, int)
icy.type.collection.array.Array2DUtil.createArray(int, int)
icy.type.collection.array.Array1DUtil.createArray(int, int) use `Array1DUtil.createArray(DataType, int)` instead
icy.type.collection.array.ArrayUtil.createArray1D(int, int) use `Array1DUtil.createArray(icy.type.DataType, int)` instead
icy.type.collection.array.ArrayUtil.createArray2D(int, int) use `Array2DUtil.createArray(icy.type.DataType, int)` instead
icy.type.collection.array.ArrayUtil.createArray3D(int, int) use `Array2DUtil.createArray(int, int)` instead
icy.image.IcyBufferedImage.createCompatibleThumbnailFrom(IFormatReader, int, int) Use `LociImporterPlugin.getThumbnailCompatible(IFormatReader, int, int, int)` instead.
icy.sequence.MetaDataUtil.createDefaultMetadata(String) Use `MetaDataUtil.createMetadata(String)` instead.
icy.image.IcyBufferedImage.createEmptyImage(int, int, IcyColorModel) Use `IcyBufferedImage.IcyBufferedImage(int, int, IcyColorModel)` instead.
icy.image.IcyBufferedImage.createFrom(IFormatReader, int, int) Use `LociImporterPlugin.getImage(IFormatReader, Rectangle, int, int)` instead.
icy.image.IcyBufferedImage.createFrom(IFormatReader, int, int, int, int, int, int, int) Use `LociImporterPlugin.getImage(IFormatReader, Rectangle, int, int, int, int)` instead.
icy.image.colormodel.IcyColorModel.createInstance(int, int, boolean) use `IcyColorModel.createInstance(int, DataType)` instead
icy.util.OMEUtil.createOMEMetadata() Use `OMEUtil.createOMEXMLMetadata()` instead
icy.util.OMEUtil.createOMEMetadata(MetadataRetrieve) Use `OMEUtil.createOMEXMLMetadata(MetadataRetrieve)` instead
icy.util.OMEUtil.createOMEMetadata(MetadataRetrieve, int) Use `OMEUtil.createOMEXMLMetadata(MetadataRetrieve,int)` instead
icy.sequence.MetaDataUtil.createOMEMetadata(MetadataRetrieve, int) Use `OMEUtil.createOMEXMLMetadata(MetadataRetrieve, int)`
icy.image.IcyBufferedImage.createThumbnailFrom(IFormatReader, int, int) Use `LociImporterPlugin.getThumbnail(IFormatReader, int, int, int)` instead.
icy.type.TypeUtil.dataBufferTypeToDataType(int) use `DataType.getDataTypeFromDataBufferType(int)` instead
icy.type.TypeUtil.dataTypeToPixelType(int, boolean) use `DataType.toPixelType()` instead
icy.roi.ROI.delete() Use `ROI.remove()` instead.
icy.painter.AbstractPainter.delete() Use `AbstractPainter.remove()` instead.
icy.vtk.VtkJoglPanel.Delete() Use `VtkJoglPanel.disposeInternal()` instead
icy.roi.ROI.delete(boolean) Use `ROI.remove(boolean)` instead.
icy.plugin.PluginInstaller.desinstall(PluginDescriptor, boolean) Use `PluginInstaller.desinstall(PluginDescriptor, boolean, boolean)` instead.
icy.roi.ROI.detachFrom(Sequence) use `Sequence.removeROI(ROI)` instead
icy.painter.Overlay.detachFrom(Sequence) Use `Sequence.removeOverlay(Overlay)` instead.
icy.painter.AbstractPainter.detachFrom(Sequence) Use `Sequence.removePainter(Painter)` instead.
icy.roi.ROI.detachFromAll() Use `ROI.remove()` instead.
icy.painter.AbstractPainter.detachFromAll() Use `AbstractPainter.remove()` instead.
icy.roi.ROI.detachFromAll(boolean) Use `ROI.remove(boolean)` instead.
icy.action.IcyAbstractAction.doAction() Use `IcyAbstractAction.executeNow()` instead
icy.gui.menu.tools.SequenceCropper.doRoiCrop() Use `SequenceUtil.getSubSequence(Sequence, ROI)` instead.
icy.gui.menu.tools.SequenceCropper.doRoiCrop(Viewer, ROI) Use `SequenceUtil.getSubSequence(Sequence, ROI)` instead.
icy.search.OnlineSearchResultProducer.doSearch(Document, String[], SearchResultConsumer) Use `OnlineSearchResultProducer.doSearch(Document, String, SearchResultConsumer)` instead
icy.search.SearchResultProducer.doSearch(String[], SearchResultConsumer) Use `SearchResultProducer.doSearch(String, SearchResultConsumer)` instead
icy.type.collection.array.ArrayUtil.doubleArrayToArray1D(double[], int, Object, int, int) use Array1DUtil.doubleArrayToArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToArray1D(double[], Object) use Array1DUtil.doubleArrayToArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToArray2D(double[][], int, Object, int, int) use Array2DUtil.doubleArrayToArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToArray2D(double[][], Object) use Array2DUtil.doubleArrayToArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToSafeArray1D(double[], int, Object, int, int, boolean) use Array1DUtil.doubleArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToSafeArray1D(double[], Object, boolean) use Array1DUtil.doubleArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToSafeArray2D(double[][], int, Object, int, int, boolean) use Array2DUtil.doubleArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.doubleArrayToSafeArray2D(double[][], Object, boolean) use Array2DUtil.doubleArrayToSafeArray instead
icy.gui.util.GuiUtil.drawCenteredText(Graphics, String, int, int) Use `GraphicsUtil.drawCenteredString(Graphics, String, int, int, boolean)` instead
icy.util.ShapeUtil.drawFromPath(PathIterator, Graphics2D) Use `GraphicsUtil.drawPathIterator(PathIterator, Graphics2D)` instead
icy.gui.util.GuiUtil.drawHCenteredText(Graphics, String, int, int) uses `GraphicsUtil.drawHCenteredString(Graphics, String, int, int, boolean)` instead
icy.gui.main.MainInterfaceGui.endUpdate()
icy.gui.main.MainInterfaceBatch.endUpdate()
icy.gui.main.MainInterface.endUpdate()
icy.sequence.MetaDataUtil.ensureChannel(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.ensureChannel(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.ensureSerie(OME, int) Use `MetaDataUtil.ensureSeries(OME, int)` instead
icy.roi.BooleanMask2D.exclusiveUnion(BooleanMask2D) Use `BooleanMask2D.getExclusiveUnion(BooleanMask2D)` instead.
icy.roi.BooleanMask2D.exclusiveUnion(Rectangle, boolean[]) Use `BooleanMask2D.getExclusiveUnion(Rectangle, boolean[])` instead.
icy.file.FileUtil.exist(String) use `FileUtil.exists(String)` instead
icy.main.Icy.exit(boolean, boolean) use `exit(boolean)` instead
icy.file.FileUtil.explode(List, boolean, boolean) Use `FileUtil.explode(List, FileFilter, boolean, boolean)` instead.
icy.image.IcyBufferedImage.extractBand(int) Use `IcyBufferedImageUtil.extractChannel(IcyBufferedImage, int)` instead
icy.sequence.Sequence.extractBand(int) Use `SequenceUtil.extractChannel(Sequence, int)` instead
icy.image.IcyBufferedImage.extractBands(List) Use `IcyBufferedImageUtil.extractChannels(IcyBufferedImage, List)` instead
icy.sequence.Sequence.extractBands(List) Use `SequenceUtil.extractChannels(Sequence, List)` instead
icy.image.IcyBufferedImage.extractChannel(int) Use `IcyBufferedImageUtil.extractChannel(IcyBufferedImage, int)` instead.
icy.sequence.Sequence.extractChannel(int) Use `SequenceUtil.extractChannel(Sequence, int)` instead.
icy.image.IcyBufferedImageUtil.extractChannels(IcyBufferedImage, List) Use `IcyBufferedImageUtil.extractChannels(IcyBufferedImage, int[])` instead.
icy.image.IcyBufferedImage.extractChannels(List) Use `IcyBufferedImageUtil.extractChannels(IcyBufferedImage, List)` instead.
icy.sequence.Sequence.extractChannels(List) Use `SequenceUtil.extractChannels(Sequence, List)` instead.
icy.sequence.SequenceUtil.extractChannels(Sequence, List) Use `SequenceUtil.extractChannels(Sequence, int...)` instead.
icy.type.collection.array.ArrayUtil.fill(Object, int, int, double) Use `Array1DUtil.fill(Object, int, int, double)` instead.
icy.vtk.VtkUtil.findActor(vtkRenderer, vtkActor) Use `VtkUtil.hasProp(vtkRenderer, vtkProp)` instead.
icy.vtk.VtkUtil.findActor2D(vtkRenderer, vtkActor2D) Use `VtkUtil.hasProp(vtkRenderer, vtkProp)` instead.
icy.vtk.VtkUtil.findProp(vtkRenderer, vtkProp) Use `VtkUtil.hasProp(vtkRenderer, vtkProp)` instead.
icy.system.thread.Processor.fireDoneEvent(Processor.FutureTaskAdapter) useless
icy.type.collection.array.ArrayUtil.floatArrayToArray1D(float[], int, Object, int, int) use Array1DUtil.floatArrayToArray instead
icy.type.collection.array.ArrayUtil.floatArrayToArray1D(float[], Object) use Array1DUtil.floatArrayToArray instead
icy.type.collection.array.ArrayUtil.floatArrayToArray2D(float[][], int, Object, int, int) use Array2DUtil.floatArrayToArray instead
icy.type.collection.array.ArrayUtil.floatArrayToArray2D(float[][], Object) use Array2DUtil.floatArrayToArray instead
icy.type.collection.array.ArrayUtil.floatArrayToSafeArray1D(float[], int, Object, int, int, boolean) use Array1DUtil.floatArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.floatArrayToSafeArray1D(float[], Object, boolean) use Array1DUtil.floatArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.floatArrayToSafeArray2D(float[][], int, Object, int, int, boolean) use Array2DUtil.floatArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.floatArrayToSafeArray2D(float[][], Object, boolean) use Array2DUtil.floatArrayToSafeArray instead
icy.type.TypeUtil.formatToolsTypeToDataType(int) use `DataType.getDataTypeFromFormatToolsType(int)` instead
icy.util.OMEUtil.generateMetaData(IcyBufferedImage, boolean) Use `MetaDataUtil.generateMetaData(IcyBufferedImage, boolean)` instead.
icy.file.Saver.generateMetaData(int, int, int, DataType) use `OMEUtil.generateMetaData(int, int, int, DataType, boolean)` instead
icy.util.OMEUtil.generateMetaData(int, int, int, DataType, boolean) Use `MetaDataUtil.generateMetaData(int, int, int, DataType, boolean)` instead.
icy.file.Saver.generateMetaData(int, int, int, int, boolean) use `OMEUtil.generateMetaData(int, int, int, DataType, boolean)` instead
icy.file.Saver.generateMetaData(int, int, int, int, int, DataType) use `OMEUtil.generateMetaData(int, int, int, int, int, DataType, boolean)` instead
icy.util.OMEUtil.generateMetaData(int, int, int, int, int, DataType, boolean) Uses `MetaDataUtil.generateMetaData(int, int, int, int, int, DataType, boolean)` instead.
icy.file.Saver.generateMetaData(int, int, int, int, int, int, boolean) use `OMEUtil.generateMetaData(int, int, int, int, int, DataType, boolean)` instead
icy.util.OMEUtil.generateMetaData(OMEXMLMetadataImpl, int, int, int, int, int, DataType, boolean) Uses `MetaDataUtil.setMetaData(OMEXMLMetadata, int, int, int, int, int, DataType, boolean)` instead.
icy.util.OMEUtil.generateMetaData(Sequence, boolean) Use `MetaDataUtil.generateMetaData(Sequence, boolean)` instead.
icy.util.OMEUtil.generateMetaData(Sequence, boolean, boolean, boolean) Use `MetaDataUtil.generateMetaData(Sequence, boolean)` instead.
icy.sequence.MetaDataUtil.generateMetaData(Sequence, boolean, boolean, boolean) Use `MetaDataUtil.generateMetaData(Sequence, boolean)` instead.
icy.util.OMEUtil.generateMetaData(Sequence, int, int, boolean) Use `MetaDataUtil.generateMetaData(Sequence, boolean)` instead.
icy.sequence.MetaDataUtil.generateMetaData(Sequence, int, int, boolean) Use `MetaDataUtil.generateMetaData(Sequence, boolean)` instead.
plugins.kernel.canvas.VtkCanvas.getActiveCam() Use `VtkCanvas.getCamera()` instead
icy.gui.util.LookAndFeelUtil.getActiveColorSheme(Component) Use `LookAndFeelUtil.getActiveColorScheme(Component)` instead.
icy.gui.util.LookAndFeelUtil.getActiveColorSheme(Component, ComponentState) Use `LookAndFeelUtil.getActiveColorScheme(Component, ComponentState)` instead.
icy.gui.util.LookAndFeelUtil.getActiveColorSheme(DecorationAreaType) Use `LookAndFeelUtil.getActiveColorScheme(DecorationAreaType)` instead.
icy.system.thread.BackgroundProcessor.getActiveCount() Use `ThreadUtil.getActiveBgTaskCount()` instead
icy.plugin.PluginLoader.getAllClasses() Use `PluginLoader.getLoadedClasses()` instead as we load classes on demand.
icy.canvas.Layer.getAlpha() Use `Layer.getOpacity()` instead
icy.roi.ROI2D.getArea() Use `ROI.getNumberOfPoints()` instead.
icy.roi.ROIUtil.getArea(Sequence, ROI) Use `ROIAreaDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getArea(Sequence, ROI, int) Use `ROIAreaDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.image.IcyBufferedImage.getARGBImage() Use `IcyBufferedImageUtil.getARGBImage(IcyBufferedImage)` instead.
icy.image.IcyBufferedImage.getARGBImage(BufferedImage) Use `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage)` instead.
icy.image.IcyBufferedImageUtil.getARGBImage(IcyBufferedImage, BufferedImage) Use `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage)` instead.
icy.image.IcyBufferedImageUtil.getARGBImage(IcyBufferedImage, LUT, BufferedImage) Use `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage, LUT)` instead.
icy.image.IcyBufferedImage.getARGBImage(LUT) Use `IcyBufferedImageUtil.getARGBImage(IcyBufferedImage, LUT)` instead.
icy.image.IcyBufferedImage.getARGBImage(LUT, BufferedImage) Uses `IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage, LUT)` instead.
icy.type.collection.array.ArrayUtil.getArrayDataType(Object) Use `ArrayUtil.getArrayType(Object)` instead
icy.type.collection.array.ArrayDataType.getArrayDataType(Object) Use `ArrayType.getArrayInfo(Object)` instead
icy.roi.ROI2D.getAsBooleanMask() Use `ROI2D.getBooleanMask(boolean)` instead.
icy.roi.ROI2D.getAsBooleanMask(boolean) Use `ROI2D.getBooleanMask(boolean)` instead.
icy.roi.ROI2D.getAsBooleanMask(int, int, int, int) Use `ROI2D.getBooleanMask(boolean)` instead.
icy.roi.ROI2D.getAsBooleanMask(int, int, int, int, boolean) Use `ROI2D.getBooleanMask(int, int, int, int, boolean)` instead.
icy.roi.ROI2D.getAsBooleanMask(Rectangle) Use `ROI2D.getBooleanMask(boolean)` instead.
icy.roi.ROI2D.getAsBooleanMask(Rectangle, boolean) Use `ROI2D.getBooleanMask(Rectangle, boolean)` instead.
icy.system.SystemUtil.getAvailableProcessors() Use `SystemUtil.getNumberOfCPUs()` instead
icy.system.CPUMonitor.getAvailableProcessors()
icy.system.profile.CPUMonitor.getAvailableProcessors()
icy.math.UnitUtil.getBestUnit(double) Use `UnitUtil.getBestTimeUnit(double)` instead.
icy.resource.ResourceUtil.getBlackIcon(String) use `ResourceUtil.getAlphaIcon(String)` instead
icy.resource.ResourceUtil.getBlackIcon(String, int) use `ResourceUtil.getAlphaIcon(String, int)` instead
icy.resource.ResourceUtil.getBlackIconAsImage(String) use `ResourceUtil.getAlphaIconAsImage(String)` instead
icy.resource.ResourceUtil.getBlackIconAsImage(String, int) use `ResourceUtil.getAlphaIconAsImage(String, int)` instead
icy.roi.ROI2D.getBooleanMask() Use `ROI2D.getBooleanMask(boolean)` instead.
icy.roi.ROI2D.getBooleanMask(int, int, int, int) Use `ROI2D.getBooleanMask(int, int, int, int, boolean)` instead
icy.roi.ROI2D.getBooleanMask(Rectangle) Use `ROI2D.getBooleanMask(Rectangle, boolean)` instead
icy.sequence.Sequence.getBounds() Use `Sequence.getBounds2D()` instead
icy.math.MathUtil.getBytesString(double) please use `UnitUtil.getBytesString(double)` instead.
icy.gui.viewer.Viewer.getC() Use `Viewer.getPositionZ()` instead.
icy.canvas.IcyCanvas.getC() uses getPositionC() instead
icy.canvas.IcyCanvas.getCanvasOffsetC() use getOffsetC() instead
icy.canvas.IcyCanvas.getCanvasOffsetT() use getOffsetT() instead
icy.canvas.IcyCanvas.getCanvasOffsetX() use getOffsetX() instead
icy.canvas.IcyCanvas.getCanvasOffsetY() use getOffsetY() instead
icy.canvas.IcyCanvas.getCanvasOffsetZ() use getOffsetZ() instead
icy.plugin.PluginDescriptor.getChangesLog() Use `PluginDescriptor.getChangeLog()` instead
icy.sequence.MetaDataUtil.getChannel(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.getChannel(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.getChannelColor(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.getChannelColor(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.getChannelName(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.getChannelName(OMEXMLMetadata, int, int)` instead
icy.image.IcyBufferedImage.getChannelTypeGlobalBounds() Use `IcyBufferedImage.getChannelsGlobalTypeBounds()` instead.
icy.sequence.Sequence.getChannelTypeGlobalBounds() Use `Sequence.getChannelsGlobalTypeBounds()` instead
icy.gui.main.MainFrame.getChat() IRC has been removed since Icy 1.9.8.0
icy.gui.inspector.InspectorPanel.getChatPanel() IRC has been removed since Icy 1.9.8.0
icy.plugin.PluginDescriptor.getClassAsString() useless method
icy.image.IcyBufferedImage.getColormap(int) Use `IcyBufferedImage.getColorMap(int)` instead (different case).
icy.image.colorspace.IcyColorSpace.getColormap(int) Use `IcyColorSpace.getColorMap(int)` instead (different case).
icy.image.colormodel.IcyColorModel.getColormap(int) Use `IcyColorModel.getColorMap(int)` instead (different case).
icy.image.lut.LUT.LUTChannel.getComponent() Use `LUT.LUTChannel.getChannel()` instead.
icy.image.IcyBufferedImage.getComponentAbsBounds(int) Use `IcyBufferedImage.getChannelTypeBounds(int)` instead.
icy.sequence.Sequence.getComponentAbsBounds(int) Use `Sequence.getChannelTypeBounds(int)` instead.
icy.image.IcyBufferedImage.getComponentAbsMaxValue(int) Use `IcyBufferedImage.getChannelTypeMax(int)` instead.
icy.sequence.Sequence.getComponentAbsMaxValue(int) Use `Sequence.getChannelTypeMax(int)` instead.
icy.image.IcyBufferedImage.getComponentAbsMinValue(int) Use `IcyBufferedImage.getChannelTypeMin(int)` instead.
icy.sequence.Sequence.getComponentAbsMinValue(int) Use `Sequence.getChannelTypeMin(int)` instead.
icy.image.IcyBufferedImage.getComponentsAbsBounds() Use `IcyBufferedImage.getChannelsTypeBounds()` instead.
icy.sequence.Sequence.getComponentsAbsBounds() Use `Sequence.getChannelsTypeBounds()` instead.
icy.image.IcyBufferedImage.getComponentsUserBounds() Use `IcyBufferedImage.getChannelsBounds()` instead.
icy.sequence.Sequence.getComponentsUserBounds() Use `Sequence.getChannelsBounds()` instead.
icy.image.IcyBufferedImage.getComponentUserBounds(int) Use `IcyBufferedImage.getChannelBounds(int)` instead.
icy.sequence.Sequence.getComponentUserBounds(int) Use `Sequence.getChannelBounds(int)` instead.
icy.image.IcyBufferedImage.getComponentUserMaxValue(int) Use `IcyBufferedImage.getChannelMax(int)` instead.
icy.sequence.Sequence.getComponentUserMaxValue(int) Use `Sequence.getChannelMax(int)` instead.
icy.image.IcyBufferedImage.getComponentUserMinValue(int) Use `IcyBufferedImage.getChannelMin(int)` instead.
icy.sequence.Sequence.getComponentUserMinValue(int) Use `Sequence.getChannelMin(int)` instead.
icy.gui.component.IcyTextField.getConsumeCharKeyPressEvent() Should not be used.
icy.network.NetworkUtil.getContentString(HashMap) Use `NetworkUtil.getContentString(Map)` instead.
icy.roi.ROIUtil.getContourSize(Sequence, double, ROI, int, int) Use `ROIContourDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getContourSize(Sequence, ROI, int) Use `ROIContourDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getContourSize(Sequence, ROI, int, int) Use `ROIContourDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.image.IcyBufferedImage.getCopy() Use `IcyBufferedImageUtil.getCopy(IcyBufferedImage)` instead
icy.sequence.Sequence.getCopy() Use `SequenceUtil.getCopy(Sequence)` instead.
icy.gui.component.AbstractRoisPanel.getCSVFormattedInfosOfSelectedRois() Use `AbstractRoisPanel.getCSVFormattedInfos()` instead.
icy.system.SystemUtil.getCtrlMask() Use `SystemUtil.getMenuCtrlMask()` instead.
icy.file.FileUtil.getCurrentDirectory() Use `FileUtil.getApplicationDirectory()` instead.
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.getCursorColor() Use `ROI2DArea.ROI2DAreaPainter.getBrushColor()` instead
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.getCursorPosition() Use `ROI2DArea.ROI2DAreaPainter.getBrushPosition()` instead.
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.getCursorSize() Use `ROI2DArea.ROI2DAreaPainter.getBrushSize()` instead
icy.image.IcyBufferedImage.getDataType() use `IcyBufferedImage.getDataType_()` instead
icy.image.colormodel.IcyColorModel.getDataType() use `IcyColorModel.getDataType_()` instead
icy.sequence.Sequence.getDataType() use `Sequence.getDataType_()` instead
icy.type.TypeUtil.getDataType(Object) use `ArrayUtil.getDataType(Object)` method instead
icy.sequence.MetaDataUtil.getDataType(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getDataType(OMEXMLMetadata, int)` instead
icy.type.TypeUtil.getDataType(String) use `DataType.getDataType(String)` method instead
icy.type.TypeUtil.getDefaultBounds(int, boolean) use `DataType.getDefaultBounds()` instead
icy.system.thread.Processor.getDefaultThreadName() Use `Processor.getThreadName()` instead
icy.sequence.Sequence.getDepth()
icy.plugin.PluginDescriptor.getDesc() use `PluginDescriptor.getDescription()` instead
icy.sequence.Sequence.getDimension() Use `Sequence.getDimension2D()` instead.
icy.util.XMLUtil.getDocument(String) Use `XMLUtil.createDocument(String)` instead.
icy.util.XMLUtil.getDocumentSafe(String) Use `XMLUtil.createDocument(String)` instead.
icy.canvas.IcyCanvas.getDrawLayers() Use `IcyCanvas.isLayersVisible()` instead.
plugins.kernel.roi.roi3d.ROI3DArea.getEdgePoints() Use `ROI3D.getBooleanMask(boolean)` and `BooleanMask3D.getContourPoints()` instead.
icy.roi.BooleanMask2D.getEdgePoints() Use `BooleanMask2D.getContourPoints()` instead.
icy.roi.BooleanMask2D.getExclusiveUnionBooleanMask(ArrayList) Use `ROIUtil.getExclusiveUnion(List)` instead.
icy.roi.BooleanMask2D.getExclusiveUnionBooleanMask(BooleanMask2D, BooleanMask2D) Use `BooleanMask2D.getExclusiveUnion(BooleanMask2D, BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getExclusiveUnionBooleanMask(List) Use `BooleanMask2D.getExclusiveUnion(List)` instead.
icy.roi.BooleanMask2D.getExclusiveUnionBooleanMask(Rectangle, boolean[], Rectangle, boolean[]) Use `BooleanMask2D.getExclusiveUnion(Rectangle, boolean[], Rectangle, boolean[])` instead.
icy.roi.BooleanMask2D.getExclusiveUnionBooleanMask(ROI2D[]) Use `ROIUtil.getExclusiveUnion(List)` instead.
icy.util.ReflectionUtil.getField(Object, String, boolean) Use `ReflectionUtil.getField(Class, String, boolean)` instead.
icy.util.ClassUtil.getField(Object, String, boolean) Use `ReflectionUtil.getField(Object, String, boolean)` instead
icy.util.ClassUtil.getFieldObject(Object, String, boolean) Use `ReflectionUtil.getFieldObject(Object, String, boolean)` instead
icy.file.Saver.getFileFormat(IFormatWriter, FileFormat) Use `Saver.getImageFileFormat(IFormatWriter, ImageFileFormat)` instead.
icy.file.FileFormat.getFileFormat(String) Use `FileFormat.getFileFormat(String, FileFormat)` instead.
icy.file.FileUtil.getFileList(File, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(File, boolean, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(File, FileFilter, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(File, FileFilter, boolean, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(String, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(String, boolean, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(String, FileFilter, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileList(String, FileFilter, boolean, boolean, boolean) Use `FileUtil.getFiles(File, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileListAsString(String, boolean, boolean) Use `FileUtil.getFiles(String, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileListAsString(String, boolean, boolean, boolean) Use `FileUtil.getFiles(String, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileListAsString(String, FileFilter, boolean, boolean) Use `FileUtil.getFiles(String, FileFilter, boolean, boolean, boolean)` instead.
icy.file.FileUtil.getFileListAsString(String, FileFilter, boolean, boolean, boolean) Use `FileUtil.getFiles(String, FileFilter, boolean, boolean, boolean)` instead.
icy.file.Loader.getFilePositions(List, boolean) Use `SequenceFileSticher.groupAllFiles(SequenceFileImporter, Collection, boolean, FileFrame)` instead
icy.file.Loader.getFilePositions(List, boolean, FileFrame) Use `SequenceFileSticher.groupAllFiles(SequenceFileImporter, Collection, boolean, FileFrame)` instead
icy.gui.menu.SequenceOperationTask.getFillValue() Use Too
icy.gui.main.MainInterfaceGui.getFirstSequenceContaining(Painter)
icy.gui.main.MainInterfaceBatch.getFirstSequenceContaining(Painter)
icy.gui.main.MainInterface.getFirstSequenceContaining(Painter) Use `MainInterface.getFirstSequenceContaining(Overlay)` instead.
icy.gui.main.MainInterfaceGui.getFirstSequencesContaining(Painter)
icy.gui.main.MainInterfaceBatch.getFirstSequencesContaining(Painter)
icy.gui.main.MainInterface.getFirstSequencesContaining(Painter)
icy.gui.main.MainInterfaceGui.getFirstSequencesContaining(ROI)
icy.gui.main.MainInterface.getFirstSequencesContaining(ROI)
icy.gui.main.MainInterfaceGui.getFirstViewerContaining(Painter)
icy.gui.main.MainInterfaceBatch.getFirstViewerContaining(Painter)
icy.gui.main.MainInterface.getFirstViewerContaining(Painter) use `MainInterface.getFirstViewerContaining(Overlay)` instead.
icy.gui.main.MainInterfaceGui.getFocusedImage()
icy.gui.main.MainInterface.getFocusedImage() Use `MainInterface.getActiveImage()` instead.
icy.plugin.abstract_.Plugin.getFocusedImage() Use `Plugin.getActiveImage()` instead
icy.gui.main.MainInterfaceGui.getFocusedSequence()
icy.gui.main.MainInterface.getFocusedSequence() Use `MainInterface.getActiveSequence()` instead.
icy.plugin.abstract_.Plugin.getFocusedSequence() Use `Plugin.getActiveSequence()` instead
icy.gui.main.MainInterfaceGui.getFocusedViewer()
icy.gui.main.MainInterface.getFocusedViewer() Use `MainInterface.getActiveViewer()` instead.
icy.plugin.abstract_.Plugin.getFocusedViewer() Use `Plugin.getActiveViewer()` instead
icy.gui.main.MainInterfaceGui.getFrame()
icy.gui.main.MainInterfaceBatch.getFrame()
icy.gui.main.MainInterface.getFrame() Use `MainInterface.getMainFrame()` instead
icy.image.IcyBufferedImage.getGlobalChannelTypeBounds() Use `IcyBufferedImage.getChannelTypeGlobalBounds()` instead.
icy.sequence.Sequence.getGlobalChannelTypeBounds() Use `Sequence.getChannelTypeGlobalBounds()` instead.
icy.image.IcyBufferedImage.getGlobalComponentAbsBounds() Use `IcyBufferedImage.getGlobalChannelTypeBounds()` instead.
icy.sequence.Sequence.getGlobalComponentAbsBounds() Use `Sequence.getChannelsGlobalTypeBounds()` instead.
icy.resource.ResourceUtil.getIcyIcon(String) use `ResourceUtil.getAlphaIcon(String)` instead
icy.resource.ResourceUtil.getIcyIcon(String, int) use `ResourceUtil.getAlphaIcon(String, int)` instead
icy.canvas.Canvas2D.CanvasView.ImageCache.getImage() Caching is done as tiles now so it's better to use `Canvas2D.CanvasView.ImageCache.getImageAsTiles()`
icy.gui.viewer.Viewer.getImage(int, int) Use `Viewer.getImage(int, int, int)` with C = -1 instead.
icy.canvas.IcyCanvas.getImage(int, int) Use `IcyCanvas.getImage(int, int, int)` with C = -1 instead.
icy.canvas.IcyCanvas.getImageCanvasSize(DimensionId) doesn't take rotation transformation in account. Use IcyCanvasXD.getImageCanvasSize(..) instead
icy.canvas.IcyCanvas.getImageCanvasSizeC() doesn't take rotation transformation in account. Use IcyCanvasXD.getImageCanvasSize(..) instead
icy.canvas.IcyCanvas.getImageCanvasSizeT() doesn't take rotation transformation in account. Use IcyCanvasXD.getImageCanvasSize(..) instead
icy.canvas.IcyCanvas.getImageCanvasSizeX() doesn't take rotation transformation in account. Use IcyCanvasXD.getImageCanvasSize(..) instead
icy.canvas.IcyCanvas.getImageCanvasSizeY() doesn't take rotation transformation in account. Use IcyCanvasXD.getImageCanvasSize(..) instead
icy.canvas.IcyCanvas.getImageCanvasSizeZ() doesn't take rotation transformation in account. Use IcyCanvasXD.getImageCanvasSize(..) instead
icy.sequence.MetaDataUtil.getImageID(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getImageID(OMEXMLMetadata, int)` instead
icy.canvas.IcyCanvas.getImageOffsetC() use getOffsetC() instead
icy.canvas.IcyCanvas.getImageOffsetT() use getOffsetT() instead
icy.canvas.IcyCanvas.getImageOffsetX() use getOffsetX() instead
icy.canvas.IcyCanvas.getImageOffsetY() use getOffsetY() instead
icy.canvas.IcyCanvas.getImageOffsetZ() use getOffsetZ() instead
icy.image.colormap.IcyColorMapComponent.getIntensity(int) Use `IcyColorMapComponent.getValue(int)` instead.
icy.roi.ROIUtil.getIntensityInfo(Sequence, ROI) Use `ROIIntensityDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getIntensityInfo(Sequence, ROI, int, int, int) Use `ROIIntensityDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getInteriorSize(Sequence, double, ROI, int, int) Use `ROIInteriorDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getInteriorSize(Sequence, ROI, int) Use `ROIInteriorDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getInteriorSize(Sequence, ROI, int, int) Use `ROIInteriorDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.BooleanMask2D.getIntersect(BooleanMask2D) Use `BooleanMask2D.getIntersection(BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getIntersect(Rectangle, boolean[]) Use `BooleanMask2D.getIntersection(Rectangle, boolean[])` instead.
icy.roi.BooleanMask2D.getIntersectBooleanMask(ArrayList) Use `ROIUtil.getIntersection(List)` instead.
icy.roi.BooleanMask2D.getIntersectBooleanMask(BooleanMask2D, BooleanMask2D) Use `BooleanMask2D.getIntersectionBooleanMask(BooleanMask2D, BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getIntersectBooleanMask(Rectangle, boolean[], Rectangle, boolean[]) Use `BooleanMask2D.getIntersectionBooleanMask(Rectangle, boolean[], Rectangle, boolean[])` instead.
icy.roi.BooleanMask2D.getIntersectBooleanMask(ROI2D[]) Use `ROIUtil.getIntersection(List)` instead.
icy.type.geom.Line2DUtil.getIntersection(Line2D, Line2D) Use `GeomUtil.getIntersection(Line2D, Line2D)` instead
icy.type.geom.Line2DUtil.getIntersection(Line2D, Line2D, boolean, boolean) Use `GeomUtil.getIntersection(Line2D, Line2D)` instead
icy.roi.BooleanMask2D.getIntersectionBooleanMask(BooleanMask2D, BooleanMask2D) Use `BooleanMask2D.getIntersection(BooleanMask2D, BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getIntersectionBooleanMask(List) Use `BooleanMask2D.getIntersection(List)` instead.
icy.roi.BooleanMask2D.getIntersectionBooleanMask(Rectangle, boolean[], Rectangle, boolean[]) Use `BooleanMask2D.getIntersection(Rectangle, boolean[], Rectangle, boolean[])` instead.
icy.type.TypeUtil.getItems(boolean, boolean) use `DataType.getItems(boolean, boolean, boolean)` instead
icy.system.SystemUtil.getJavaTotalMemory() Use `SystemUtil.getJavaAllocatedMemory()` instead.
icy.canvas.IcyCanvas.getLayer(Painter) Use `IcyCanvas.getLayer(Overlay)` instead.
icy.canvas.IcyCanvas.getLayersPainter() Use `IcyCanvas.getOverlays()` instead.
icy.type.collection.array.ArrayUtil.getLenght(Object) use `ArrayUtil.getLength(Object)` instead
icy.sequence.Sequence.getLength()
icy.plugin.PluginLoader.getLogError()
icy.image.IcyBufferedImage.getLUT() No attached LUT to an image. Use `IcyBufferedImage.createCompatibleLUT(boolean)` instead.
icy.image.lut.LUT.getLutBand(int) Use `LUT.getLutChannel(int)` instead.
icy.image.lut.LUT.getLutBands() Use `LUT.getLutChannels()` instead.
icy.gui.viewer.Viewer.getLutPanel() Use `Viewer.getLutViewer()` instead
plugins.kernel.roi.roi2d.ROI2DArea.getMaskColor() Use `ROI.getDisplayColor()` instead.
icy.roi.ROIUtil.getMassCenter(ROI) Use `ROIMassCenterDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMassCenter(ROI2D) Use `ROIMassCenterDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMassCenter(ROI3D) Use `ROIMassCenterDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMassCenter(ROI4D) Use `ROIMassCenterDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMassCenter(ROI5D) Use `ROIMassCenterDescriptorsPlugin` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.canvas.IcyCanvas.getMax(DimensionId) Use `IcyCanvas.getMaxPosition(DimensionId)` instead
icy.canvas.IcyCanvas.getMaxC() Use `IcyCanvas.getMaxPositionC()` instead
icy.roi.ROIUtil.getMaxIntensity(Sequence, ROI) Use `ROIMaxIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMaxIntensity(Sequence, ROI, int, int, int) Use `ROIMaxIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.canvas.IcyCanvas.getMaxT() Use `IcyCanvas.getMaxPositionT()` instead
icy.type.TypeUtil.getMaxValue(int, boolean) use `DataType.getMaxValue()` instead
icy.canvas.IcyCanvas.getMaxX() Use `IcyCanvas.getMaxPositionX()` instead
icy.canvas.IcyCanvas.getMaxY() Use `IcyCanvas.getMaxPositionY()` instead
icy.canvas.IcyCanvas.getMaxZ() Use `IcyCanvas.getMaxPositionZ()` instead
icy.roi.ROIUtil.getMeanIntensity(Sequence, ROI) Use `ROIMeanIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMeanIntensity(Sequence, ROI, int, int, int) Use `ROIMeanIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.sequence.Sequence.getMetadata() Use `Sequence.getOMEXMLMetadata()` instead.
icy.image.ImageProvider.getMetaData() Use `ImageProvider.getOMEXMLMetaData()` instead.
plugins.kernel.importer.LociImporterPlugin.getMetaData()
icy.file.Loader.getMetaData(File) Use `Loader.getOMEXMLMetaData(String)` instead.
icy.file.Loader.getMetaData(SequenceFileImporter, String) Use `Loader.getOMEXMLMetaData(SequenceFileImporter, String)` instead.
icy.file.Loader.getMetaData(String) Use `Loader.getOMEXMLMetaData(String)` instead
icy.util.ReflectionUtil.getMethod(Object, String, boolean, Class...) Use `ReflectionUtil.getMethod(Class, String, boolean, Class...)` instead.
icy.util.ClassUtil.getMethod(Object, String, boolean, Class...) Use `ReflectionUtil.getMethod(Object, String, boolean, Class...)` instead
icy.roi.ROIUtil.getMinIntensity(Sequence, ROI) Use `ROIMinIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getMinIntensity(Sequence, ROI, int, int, int) Use `ROIMinIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.type.TypeUtil.getMinValue(int, boolean) use `DataType.getMinValue()` instead
icy.roi.ROI.ROIPainter.getMousePos() Better to retrieve mouse position from the `IcyCanvas` object.
icy.sequence.MetaDataUtil.getName(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getName(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getNumChannel(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getNumChannel(OMEXMLMetadata, int)` instead
icy.image.IcyBufferedImage.getNumComponents() Use `IcyBufferedImage.getSizeC()` instead.
icy.image.lut.LUT.getNumComponents() Use `LUT.getNumChannel()` instead.
icy.sequence.Sequence.getNumComponents()
icy.type.TypeUtil.getNumDimension(Object) use `ArrayUtil.getDim(Object)` method instead
icy.sequence.MetaDataUtil.getNumSerie(OMEXMLMetadata) Use `MetaDataUtil.getNumSeries(OMEXMLMetadata)` instead
icy.sequence.MetaDataUtil.getNumSerie(OMEXMLMetadata) Use `MetaDataUtil.getNumSeries(OMEXMLMetadata)` instead
icy.sequence.MetaDataUtil.getNumSerie(OMEXMLMetadataImpl) Use `MetaDataUtil.getNumSeries(OMEXMLMetadata)` instead
icy.sequence.MetaDataUtil.getOME(OMEXMLMetadataImpl) Use `MetaDataUtil.getOME(OMEXMLMetadata)` instead
icy.util.OMEUtil.getOMEMetadata(MetadataRetrieve) Use `OMEUtil.getOMEXMLMetadata(MetadataRetrieve)` instead
icy.canvas.IcyCanvas.getOrderedLayersForEvent() Use `IcyCanvas.getLayers()` instead (sorted on Layer priority).
plugins.kernel.roi.roi2d.ROI2DArea.getPainter()
icy.roi.ROI.getPainter() Use `ROI.getOverlay()` instead.
icy.canvas.Layer.getPainter() Use `Layer.getOverlay()` instead.
icy.gui.main.MainInterfaceGui.getPainters()
icy.gui.main.MainInterfaceBatch.getPainters()
icy.gui.main.MainInterface.getPainters() Use `MainInterface.getOverlays()` instead.
icy.sequence.Sequence.getPainters() Use `Sequence.getOverlays()` instead.
icy.sequence.Sequence.getPainters(Class) Use `Sequence.getOverlays(Class)` instead.
icy.sequence.Sequence.getPainterSet() Use `Sequence.getOverlaySet()` instead.
plugins.kernel.canvas.VtkCanvas.getPanel3D() Use `VtkCanvas.getVtkPanel()`
icy.roi.ROI2D.getPerimeter() Use `ROI.getNumberOfContourPoints()` instead.
icy.roi.ROI.getPerimeter() Use `ROI.getLength(Sequence)` or `ROI.getNumberOfContourPoints()` instead.
icy.roi.ROI2D.getPerimeter(Sequence) Use `ROI.getLength(Sequence)` instead
icy.roi.ROIUtil.getPerimeter(Sequence, ROI) Use `ROIPerimeterDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getPerimeter(Sequence, ROI, int) Use `ROIPerimeterDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
plugins.kernel.canvas.VtkCanvas.getPickOnMouseMove() Always enabled now (always return `true`)
icy.sequence.MetaDataUtil.getPixels(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getPixels(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getPixelSizeX(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.getPixelSizeX(OMEXMLMetadata, int, double)` instead
icy.sequence.MetaDataUtil.getPixelSizeY(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.getPixelSizeY(OMEXMLMetadata, int, double)` instead
icy.sequence.MetaDataUtil.getPixelSizeZ(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.getPixelSizeZ(OMEXMLMetadata, int, double)` instead
icy.roi.ROIEvent.getPoint()
icy.roi.ROIEvent.getPointEventType()
plugins.kernel.roi.roi3d.ROI3DArea.getPoints() Use `ROI3D.getBooleanMask(boolean)` and `BooleanMask3D.getPoints()` instead.
icy.image.ImageDataIterator.getPositionC() Use `ImageDataIterator.getC()` instead
icy.sequence.MetaDataUtil.getPositionT(OMEXMLMetadata, int, int, int, int, double) USe `MetaDataUtil.getPositionTOffset(OMEXMLMetadata, int, int, int, int, double)` instead
icy.image.ImageDataIterator.getPositionX() Use `ImageDataIterator.getX()` instead
icy.image.ImageDataIterator.getPositionY() Use `ImageDataIterator.getY()` instead
icy.preferences.GeneralPreferences.getPreferencesGeneral() Use `GeneralPreferences.getPreferences()` instead
icy.roi.ROI.getPropertyValue(String) use `ROI.getProperty(String)` instead.
icy.file.Loader.getReader(String) Use `Loader.getSequenceFileImporters(String)` instead.
plugins.kernel.roi.roi2d.ROI2DPoint.getRectangle() Use `ROI2DPoint.getLine()` instead.
icy.canvas.Canvas2D.getRenderedImage(int, int) Use `getRenderedImage(t, z, -1, true)` instead.
icy.canvas.Canvas2D.getRenderedImage(int, int, boolean) Use `getRenderedImage(t, z, -1, canvasView)` instead.
icy.canvas.IcyCanvas.getRenderedImage(int, int, int) Use `IcyCanvas.getRenderedImage(int, int, int, boolean)` instead.
icy.canvas.IcyCanvas.getRenderedImage(int, int, int, int, boolean) use `IcyCanvas.getRenderedImage(int, int, int, boolean)` instead
icy.canvas.IcyCanvas.getRenderedSequence() Use `IcyCanvas.getRenderedSequence(boolean, ProgressListener)` instead.
icy.canvas.IcyCanvas.getRenderedSequence(boolean) Use `IcyCanvas.getRenderedSequence(boolean, ProgressListener)` instead.
icy.canvas.IcyCanvas.getRenderedSequence(int, boolean) use `IcyCanvas.getRenderedSequence(boolean)` instead
icy.vtk.VtkJoglPanel.GetRenderer() Use `VtkJoglPanel.getRenderer()` instead
icy.vtk.VtkJoglPanel.GetRenderWindow() Use `VtkJoglPanel.getRenderWindow()` instead
icy.gui.main.MainInterfaceGui.getROI(Painter)
icy.gui.main.MainInterfaceBatch.getROI(Painter)
icy.gui.main.MainInterface.getROI(Painter) Use `MainInterface.getROI(Overlay)` instead.
icy.roi.ROI2D.getROI2DList(ArrayList) Use `ROI2D.getROI2DList(List)` instead.
icy.roi.ROI2D.getROI2DList(ROI[]) Use `ROI2D.getROI2DList(List)` instead.
icy.roi.ROI3D.getROI3DList(ArrayList) Use `ROI3D.getROI3DList(List)` instead.
icy.roi.ROI4D.getROI4DList(ArrayList) Use `ROI4D.getROI4DList(List)` instead.
icy.roi.ROI5D.getROI5DList(ArrayList) Use `ROI5D.getROI5DList(List)` instead.
icy.vtk.VtkUtil.getROIFromBinaryImage(vtkImageData, boolean) Uses `#getBooleanMaskFromBinaryImage(vtkImageData)` then `ROI3DArea.ROI3DArea(BooleanMask3D)` instead.
icy.roi.ROI.getROIList(ArrayList, Class) Use `ROI.getROIList(List, Class)` instead.
icy.roi.ROI.getROIList(ROI[], Class) Use `ROI.getROIList(List, Class)` instead.
icy.sequence.Sequence.getROIs(Class) Use `Sequence.getROIs(Class, boolean)` instead
icy.roi.ROI.getROIsFromXML(Node) Use `ROI.loadROIsFromXML(Node)` instead.
icy.image.IcyBufferedImage.getScaledCopy(int, int) Use `IcyBufferedImageUtil.scale(IcyBufferedImage, int, int)` instead.
icy.image.IcyBufferedImage.getScaledCopy(int, int, boolean, int, int) Uses `IcyBufferedImageUtil.scale(IcyBufferedImage, int, int, boolean, int, int)` instead.
icy.image.IcyBufferedImage.getScaledCopy(int, int, boolean, int, int, IcyBufferedImage.FilterType) Uses `IcyBufferedImageUtil.scale(IcyBufferedImage, int, int, boolean, int, int, IcyBufferedImageUtil.FilterType)` instead.
icy.image.IcyBufferedImage.getScaledCopy(int, int, IcyBufferedImage.FilterType) Uses `IcyBufferedImageUtil.scale(IcyBufferedImage, int, int, IcyBufferedImageUtil.FilterType)` instead.
icy.canvas.IcyCanvas.getScaleFactorC() use getScaleC() instead
icy.canvas.IcyCanvas.getScaleFactorT() use getScaleT() instead
icy.canvas.IcyCanvas.getScaleFactorX() use getScaleX() instead
icy.canvas.IcyCanvas.getScaleFactorY() use getScaleY() instead
icy.canvas.IcyCanvas.getScaleFactorZ() use getScaleZ() instead
icy.roi.ROI.getSelectedColor()
icy.roi.ROI.ROIPainter.getSelectedColor()
icy.gui.frame.sequence.ActiveSequenceActionFrame.getSeqIn() Use `ActiveSequenceActionFrame.getSequence()` instead.
icy.file.Loader.getSequenceFileImporter(List, String) Use `Loader.getSequenceFileImporter(List, String, boolean)`
icy.file.Loader.getSequenceFileImporter(String) Use `Loader.getSequenceFileImporter(String, boolean)`
icy.gui.main.MainInterfaceGui.getSequencesContaining(Painter)
icy.gui.main.MainInterfaceBatch.getSequencesContaining(Painter)
icy.gui.main.MainInterface.getSequencesContaining(Painter) Use `MainInterface.getSequencesContaining(Overlay)` instead.
icy.sequence.MetaDataUtil.getSerie(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getSeries(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getSerie(OMEXMLMetadata, int) Use `MetaDataUtil.getSeries(OMEXMLMetadata, int)` instead
icy.sequence.Sequence.getSerieIndex() Use `Sequence.getSeries()` instead
icy.sequence.MetaDataUtil.getSizeC(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getSizeC(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getSizeT(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getSizeT(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getSizeX(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getSizeX(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getSizeY(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getSizeY(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getSizeZ(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getSizeZ(OMEXMLMetadata, int)` instead
icy.roi.ROIUtil.getStandardDeviation(Sequence, ROI) Use `ROIStandardDeviationDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getStandardDeviation(Sequence, ROI, int, int, int) Use `ROIStandardDeviationDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.gui.util.GuiUtil.getStringBounds(Component, String) Use `GraphicsUtil.getStringBounds(Component, String)` instead
icy.gui.util.GuiUtil.getStringBounds(Graphics, Font, String) Use `GraphicsUtil.getStringBounds(Graphics, Font, String)` instead
icy.gui.util.GuiUtil.getStringBounds(Graphics, String) Use `GraphicsUtil.getStringBounds(Graphics, String)` instead
icy.util.XMLUtil.getSubElement(Node, String) Use `XMLUtil.getElement(Node, String)` instead.
icy.util.XMLUtil.getSubElements(Node) Use `XMLUtil.getElements(Node)` instead.
icy.util.XMLUtil.getSubElements(Node, String) Use `XMLUtil.getElements(Node, String)` instead.
icy.util.XMLUtil.getSubGenericElements(Node, String) Use `XMLUtil.getGenericElements(Node, String)` instead.
icy.util.XMLUtil.getSubGenericElements(Node, String, String) Use `XMLUtil.getGenericElements(Node, String, String)` instead.
icy.image.IcyBufferedImageUtil.getSubImage(IcyBufferedImage, int, int, int, int, int, int) Use `IcyBufferedImageUtil.getSubImage(IcyBufferedImage, Rectangle, int, int)` instead.
icy.image.IcyBufferedImage.getSubimage(int, int, int, int)
icy.image.IcyBufferedImage.getSubImageCopy(int, int, int, int) Uses `IcyBufferedImageUtil.getSubImage(IcyBufferedImage, int, int, int, int)` instead
icy.util.XMLUtil.getSubNode(Node, String) Use `XMLUtil.getChild(Node, String)` instead.
icy.util.XMLUtil.getSubNodes(Node) Use `XMLUtil.getChildren(Node)` instead.
icy.util.XMLUtil.getSubNodes(Node, String) Use `XMLUtil.getChildren(Node, String)` instead.
icy.sequence.Sequence.getSubSequence(int, int, int, int, int, int, int, int) Uses `SequenceUtil.getSubSequence(Sequence, int, int, int, int, int, int, int, int)` instead.
icy.sequence.SequenceUtil.getSubSequence(Sequence, int, int, int, int, int, int, int, int) Use `SequenceUtil.getSubSequence(Sequence, icy.type.rectangle.Rectangle5D.Integer)` instead.
icy.sequence.SequenceUtil.getSubSequence(Sequence, int, int, int, int, int, int, int, int, int, int) Use `SequenceUtil.getSubSequence(Sequence, icy.type.rectangle.Rectangle5D.Integer)` instead.
icy.roi.ROIUtil.getSumIntensity(Sequence, ROI) Use `ROISumIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getSumIntensity(Sequence, ROI, int, int, int) Use `ROISumIntensityDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROI3D.getSurfaceArea() Use `ROI.getNumberOfContourPoints()` instead.
icy.roi.ROIUtil.getSurfaceArea(Sequence, ROI) Use `ROISurfaceAreaDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getSurfaceArea(Sequence, ROI, int) Use `ROISurfaceAreaDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.system.SystemUtil.getSystemCpuLoad() Use `SystemUtil.getCpuLoad()` instead
icy.system.SystemUtil.getSystemCtrlMask() Use `SystemUtil.getMenuCtrlMask()` instead
icy.system.SystemUtil.getSystemFreeMemory() Use `SystemUtil.getFreeMemory()` instead
icy.system.SystemUtil.getSystemGraphicsConfiguration() Use `SystemUtil.getDefaultGraphicsConfiguration()` instead.
icy.system.SystemUtil.getSystemProcessCpuTime() Use `SystemUtil.getProcessCpuTime()` instead
icy.system.SystemUtil.getSystemTotalMemory() Use `SystemUtil.getTotalMemory()` instead
icy.gui.viewer.Viewer.getT() Use `Viewer.getPositionT()` instead.
icy.canvas.IcyCanvas.getT() uses getPositionT() instead
icy.sequence.MetaDataUtil.getTimeInterval(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.getTimeInterval(OMEXMLMetadata, int, double)` instead
icy.sequence.MetaDataUtil.getTimeIntervalFromTimePositions(OMEXMLMetadataImpl, int) Use `MetaDataUtil.getTimeIntervalFromTimePositions(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.getTimePosition(OMEXMLMetadata, int, int, int, int, double) USe `MetaDataUtil.getPositionTOffset(OMEXMLMetadata, int, int, int, int, double)` instead
icy.gui.dialog.SaverDialog.getTMax()
icy.gui.dialog.SaverDialog.getTMin()
icy.gui.menu.MainRibbon.getToolRibbon() Use `MainRibbon.getROIRibbonTask()` instead
icy.gui.main.MainInterfaceGui.getToolRibbon()
icy.gui.main.MainInterfaceBatch.getToolRibbon()
icy.gui.main.MainInterface.getToolRibbon() Use `MainInterface.getROIRibbonTask()` instead
icy.type.collection.array.Array1DUtil.getTotalLenght(byte[]) use `Array1DUtil.getTotalLength(byte[])` instead
icy.type.collection.array.Array2DUtil.getTotalLenght(byte[][]) use `Array2DUtil.getTotalLength(byte[][])` instead
icy.type.collection.array.Array1DUtil.getTotalLenght(double[]) use `Array1DUtil.getTotalLength(double[])` instead
icy.type.collection.array.Array2DUtil.getTotalLenght(double[][]) use `Array2DUtil.getTotalLength(double[][])` instead
icy.type.collection.array.Array1DUtil.getTotalLenght(float[]) use `Array1DUtil.getTotalLength(float[])` instead
icy.type.collection.array.Array2DUtil.getTotalLenght(float[][]) use `Array2DUtil.getTotalLength(float[][])` instead
icy.type.collection.array.Array1DUtil.getTotalLenght(int[]) use `Array1DUtil.getTotalLength(int[])` instead
icy.type.collection.array.Array2DUtil.getTotalLenght(int[][]) use `Array2DUtil.getTotalLength(int[][])` instead
icy.type.collection.array.ArrayUtil.getTotalLenght(Object) use `ArrayUtil.getTotalLength(Object)` instead
icy.type.collection.array.Array1DUtil.getTotalLenght(short[]) use `Array1DUtil.getTotalLength(short[])` instead
icy.type.collection.array.Array2DUtil.getTotalLenght(short[][]) use `Array2DUtil.getTotalLength(short[][])` instead
icy.math.ScalerEvent.getType()
icy.type.TypeUtil.getTypeInfo(Object) use `ArrayDataType.getArrayDataType(Object)` instead
icy.roi.BooleanMask2D.getUnionBooleanMask(ArrayList) Use `ROIUtil.getUnion(List)` instead.
icy.roi.BooleanMask2D.getUnionBooleanMask(BooleanMask2D, BooleanMask2D) Use `BooleanMask2D.getUnion(BooleanMask2D, BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getUnionBooleanMask(List) Use `BooleanMask2D.getUnion(List)` instead.
icy.roi.BooleanMask2D.getUnionBooleanMask(Rectangle, boolean[], Rectangle, boolean[]) Use `BooleanMask2D.getUnion(Rectangle, boolean[], Rectangle, boolean[])` instead.
icy.roi.BooleanMask2D.getUnionBooleanMask(ROI2D[]) Use `ROIUtil.getUnion(List)` instead.
plugins.kernel.roi.roi3d.ROI3DStack.ROI3DStackPainter.getUseChildColor() this property does not exist anymore (always return `false`)
icy.type.collection.array.ArrayUtil.getValue(Object, int, boolean) use `Array1DUtil.getValue(Object, int, boolean)` instead
icy.type.collection.array.ArrayUtil.getValue(Object, int, int, boolean) use `Array1DUtil.getValue(Object, int, int, boolean)` instead
icy.type.collection.array.Array1DUtil.getValue(Object, int, int, boolean) use `Array1DUtil.getValue(Object, int, DataType)` instead
icy.type.collection.array.ArrayUtil.getValueAsFloat(Object, int, boolean) use `Array1DUtil.getValueAsFloat(Object, int, boolean)` instead
icy.type.collection.array.ArrayUtil.getValueAsFloat(Object, int, int, boolean) use `Array1DUtil.getValueAsFloat(Object, int,int, boolean)` instead
icy.type.collection.array.Array1DUtil.getValueAsFloat(Object, int, int, boolean) use `Array1DUtil.getValueAsFloat(Object, int, DataType)` instead
icy.type.collection.array.ArrayUtil.getValueAsInt(Object, int, boolean) use `Array1DUtil.getValueAsInt(Object, int, boolean)` instead
icy.type.collection.array.ArrayUtil.getValueAsInt(Object, int, int, boolean) use `Array1DUtil.getValueAsInt(Object, int, int, boolean)` instead
icy.type.collection.array.Array1DUtil.getValueAsInt(Object, int, int, boolean) use `Array1DUtil.getValueAsInt(Object, int, DataType)` instead
icy.type.collection.array.Array1DUtil.getValueAsLong(Object, int, int, boolean) use `Array1DUtil.getValueAsLong(Object, int, DataType)` instead
icy.canvas.IcyCanvas.getVisibleOrderedLayersForEvent() Use `IcyCanvas.getVisibleLayers()` instead (sorted on Layer priority).
icy.roi.ROI3D.getVolume() Use `ROI.getNumberOfPoints()` instead.
icy.roi.ROI.getVolume() Only for ROI3D object, use `ROI.getNumberOfPoints()` instead for other type of ROI.
icy.roi.ROIUtil.getVolume(Sequence, ROI) Use `ROIVolumeDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
icy.roi.ROIUtil.getVolume(Sequence, ROI, int) Use `ROIVolumeDescriptor` or `ROIUtil.computeDescriptor(String, ROI, Sequence)` method instead.
plugins.kernel.canvas.VtkCanvas.getVolumeMapperType() Use `VtkCanvas.getGPURendering()` instead
icy.canvas.Canvas3D.getVolumeScaleX() Use `Canvas3D.getVolumeScale()` instead.
icy.canvas.Canvas3D.getVolumeScaleY() Use `Canvas3D.getVolumeScale()` instead.
icy.canvas.Canvas3D.getVolumeScaleZ() Use `Canvas3D.getVolumeScale()` instead.
icy.system.thread.Processor.getWaitingTasksCount(int) Not anymore supported. Use `Processor.getWaitingTasksCount(Callable)` or `Processor.getWaitingTasksCount(Runnable)` instead.
icy.resource.ResourceUtil.getWhiteIcon(String) use `ResourceUtil.getAlphaIcon(String)` instead
icy.resource.ResourceUtil.getWhiteIcon(String, int) use `ResourceUtil.getAlphaIcon(String, int)` instead
plugins.kernel.canvas.VtkCanvas.getWidget() there is no more orientation widget because of the jogl bug with multiple viewport.
icy.file.Saver.getWriter(File) Use `Saver.getWriter(File, FileFormat)` instead.
icy.file.Saver.getWriter(File, FileFormat) Use `Saver.getWriter(File, ImageFileFormat)` instead.
icy.file.Saver.getWriter(FileFormat) Use `Saver.getWriter(ImageFileFormat)` instead.
icy.file.Saver.getWriter(String) Use `Saver.getWriter(String, FileFormat)` instead.
icy.file.Saver.getWriter(String, FileFormat) Use `Saver.getWriter(String, ImageFileFormat)` instead.
icy.util.OMEUtil.getXMLDocument(MetadataRetrieve) Use `OMEUtil.getXMLDocument(OMEXMLMetadata)` instead
icy.roi.BooleanMask2D.getXor(BooleanMask2D) Use `BooleanMask2D.getExclusiveUnion(BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getXor(Rectangle, boolean[]) Use `BooleanMask2D.getExclusiveUnion(Rectangle, boolean[])` instead.
icy.roi.BooleanMask2D.getXorBooleanMask(ArrayList) Use `BooleanMask2D.getExclusiveUnionBooleanMask(List)` instead.
icy.roi.BooleanMask2D.getXorBooleanMask(BooleanMask2D, BooleanMask2D) Use `BooleanMask2D.getExclusiveUnionBooleanMask(BooleanMask2D, BooleanMask2D)` instead.
icy.roi.BooleanMask2D.getXorBooleanMask(Rectangle, boolean[], Rectangle, boolean[]) Uses `BooleanMask2D.getExclusiveUnionBooleanMask(Rectangle, boolean[], Rectangle, boolean[])` instead.
icy.roi.BooleanMask2D.getXorBooleanMask(ROI2D[]) Use `BooleanMask2D.getExclusiveUnionBooleanMask(ROI2D[])` instead.
icy.canvas.Canvas3D.getXScaling()
icy.canvas.Canvas3D.getYScaling()
icy.gui.viewer.Viewer.getZ() Use `Viewer.getPositionZ()` instead.
icy.canvas.IcyCanvas.getZ() uses getPositionZ() instead
icy.gui.dialog.SaverDialog.getZMax()
icy.gui.dialog.SaverDialog.getZMin()
icy.canvas.Canvas2D.getZoomFactor() use getScaleX() or getScaleY() instead
icy.canvas.Canvas3D.getZScaling()
icy.system.IcyExceptionHandler.handlePluginException(PluginDescriptor, Throwable, boolean) Use `IcyExceptionHandler.handleException(PluginDescriptor, Throwable, boolean)` instead.
icy.vtk.VtkJoglPanel.HardCopy(String, int) Use `VtkJoglPanel.doHardCopy(String, int)` instead
icy.system.thread.BackgroundProcessor.hasIdleSlots()
icy.network.NetworkUtil.hasInternetConnection() Use `NetworkUtil.hasInternetAccess()` instead.
icy.canvas.IcyCanvas.hasLayer(Painter) Use `IcyCanvas.hasLayer(Overlay)` instead.
icy.sequence.Sequence.hasPainter() Use `Sequence.hasOverlay()` instead.
icy.system.thread.Processor.hasWaitingTasks(int) Not anymore supported. Use `Processor.hasWaitingTasks(Callable)` or `Processor.hasWaitingTasks(Runnable)` instead.
icy.canvas.IcyCanvas.imageToCanvasC(double) Cannot give correct result if rotation is applied so use IcyCanvasXD.imageToCanvas(...) instead
icy.canvas.IcyCanvas.imageToCanvasT(double) Cannot give correct result if rotation is applied so use IcyCanvasXD.imageToCanvas(...) instead
icy.canvas.IcyCanvas.imageToCanvasX(double) Cannot give correct result if rotation is applied so use IcyCanvasXD.imageToCanvas(...) instead
icy.canvas.IcyCanvas.imageToCanvasY(double) Cannot give correct result if rotation is applied so use IcyCanvasXD.imageToCanvas(...) instead
icy.canvas.IcyCanvas.imageToCanvasZ(double) Cannot give correct result if rotation is applied so use IcyCanvasXD.imageToCanvas(...) instead
icy.type.collection.array.ArrayUtil.innerCopy(Object, int, int, int) Use `Array1DUtil.innerCopy(Object, int, int, int)` instead.
icy.type.collection.array.ArrayUtil.intArrayToArray1D(int[], int, Object, int, int, boolean) use Array1DUtil.intArrayToArray instead
icy.type.collection.array.ArrayUtil.intArrayToArray1D(int[], Object, boolean) use Array1DUtil.intArrayToArray instead
icy.type.collection.array.ArrayUtil.intArrayToArray2D(int[][], int, Object, int, int, boolean) use Array2DUtil.intArrayToArray instead
icy.type.collection.array.ArrayUtil.intArrayToArray2D(int[][], Object, boolean) use Array2DUtil.intArrayToArray instead
icy.type.collection.array.Array2DUtil.intArrayToSafeArray(int[][], int, Object, int, int, boolean) Use `Array2DUtil.intArrayToSafeArray(int[][], int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.intArrayToSafeArray(int[][], Object, boolean) Use `Array2DUtil.intArrayToSafeArray(int[][], Object, boolean, boolean)` instead.
icy.type.collection.array.Array1DUtil.intArrayToSafeArray(int[], int, Object, int, int, boolean) Use `Array1DUtil.intArrayToSafeArray(int[], int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.Array1DUtil.intArrayToSafeArray(int[], Object, boolean) Use `Array1DUtil.intArrayToSafeArray(int[], Object, boolean, boolean)` instead.
icy.type.collection.array.ArrayUtil.intArrayToSafeArray1D(int[], int, Object, int, int, boolean) use Array1DUtil.intArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.intArrayToSafeArray1D(int[], Object, boolean) use Array1DUtil.intArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.intArrayToSafeArray2D(int[][], int, Object, int, int, boolean) use Array2DUtil.intArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.intArrayToSafeArray2D(int[][], Object, boolean) use Array2DUtil.intArrayToSafeArray instead
icy.type.collection.array.Array2DUtil.intArrayToSafeByteArray(int[][], int, byte[][], int, int, boolean) Use `Array2DUtil.intArrayToSafeByteArray(int[][], int, byte[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.intArrayToSafeByteArray(int[], int, byte[], int, int, boolean) Use `Array1DUtil.intArrayToSafeByteArray(int[], int, byte[], int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.intArrayToSafeShortArray(int[][], int, short[][], int, int, boolean) Use `Array2DUtil.intArrayToSafeShortArray(int[][], int, short[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.intArrayToSafeShortArray(int[], int, short[], int, int, boolean) Use `Array1DUtil.intArrayToSafeShortArray(int[], int, short[], int, int, boolean, boolean)` instead.
icy.vtk.VtkJoglPanel.InteractionModeRotate() do nothing now
icy.vtk.VtkJoglPanel.InteractionModeTranslate() do nothing now
icy.vtk.VtkJoglPanel.InteractionModeZoom() do nothing now
icy.roi.ROI.internalSelect() Use `ROI.setSelected(boolean)` instead.
icy.roi.ROI.internalUnselect() Use `ROI.setSelected(boolean)` instead.
icy.system.thread.ThreadUtil.invokeAndWait(Runnable) Use `ThreadUtil.invokeNow(Runnable)` instead
icy.util.ClassUtil.invokeMethod(Object, String, boolean, Object...) Use `ReflectionUtil.invokeMethod(Object, String, boolean, Object...)` instead
icy.resource.icon.IcyIcon.isAlpha() Use `IcyIcon.getAlpha()` instead
icy.sequence.Sequence.isAWTDispatching() Don't use it, events should stay on current thread
icy.plugin.PluginRepositoryLoader.isBasicLoaded() use `PluginRepositoryLoader.isLoaded()` instead.
icy.gui.frame.progress.TaskFrame.isCanBeRemoved() Use `TaskFrame.canRemove()` instead
icy.sequence.Sequence.isComponentAbsBoundsAutoUpdate() Use `Sequence.getAutoUpdateChannelBounds()` instead.
icy.sequence.Sequence.isComponentUserBoundsAutoUpdate() Use `Sequence.getAutoUpdateChannelBounds()` instead.
icy.plugin.PluginRepositoryLoader.isDescriptorsLoaded() descriptor loading is now done per descriptor when needed
icy.roi.ROI.isEditable() Use `ROI.isReadOnly()` instead.
icy.painter.Overlay.isFixed() Use `Overlay.getCanBeRemoved()` instead.
icy.canvas.Layer.isFixed() Use `Layer.getCanBeRemoved()` instead.
icy.type.TypeUtil.isFloat(int) use `DataType` method instead
icy.main.Icy.isHeadLess() Use `MainInterface.isHeadLess()` instead.
icy.file.Loader.isImageFile(String) Use `Loader.isSupportedImageFile(String)` instead.
icy.plugin.PluginRepositoryLoader.isImagesLoaded() image loading is now done per descriptor when needed
icy.plugin.PluginDescriptor.isLoaded() Use `PluginDescriptor.isDescriptorLoaded()` instead
icy.vtk.VtkImageVolume.isMapperSupported(vtkRenderer) Should always return true now.
icy.roi.ROI2D.isOver(IcyCanvas, double, double) Use `ROI2D.isOverEdge(IcyCanvas, double, double)` instead.
icy.roi.ROI2D.isOver(IcyCanvas, Point2D) Use `ROI2D.isOverEdge(IcyCanvas, Point2D)` instead.
icy.gui.menu.ROITask.isROITool(String) Use `ROITask.isROITool()` instead.
icy.canvas.IcyCanvas.isSynchHeader() Use `IcyCanvas.isSynchMaster()` instead.
icy.gui.frame.TitledFrame.isTitleVisible() Title always hidden now
icy.gui.main.MainInterfaceGui.isUpdating()
icy.gui.main.MainInterfaceBatch.isUpdating()
icy.gui.main.MainInterface.isUpdating()
icy.system.SystemUtil.isWindow() Use `SystemUtil.isWindows()` instead.
icy.sequence.MetaDataUtil.keepSingleSerie(OMEXMLMetadataImpl, int) Use `MetaDataUtil.keepSingleSerie(OMEXMLMetadata, int)` instead
icy.painter.Overlay.keyPressed(KeyEvent, Point2D, IcyCanvas) Use `Overlay.keyPressed(KeyEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Anchor2D.keyPressed(KeyEvent, Point2D, IcyCanvas)
icy.painter.Overlay.keyReleased(KeyEvent, Point2D, IcyCanvas) Use `Overlay.keyReleased(KeyEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Anchor2D.keyReleased(KeyEvent, Point2D, IcyCanvas)
icy.plugin.PluginLauncher.launch(PluginDescriptor) Use `PluginLauncher.start(PluginDescriptor)` instead.
icy.system.thread.Processor.limitWaitingTask(int) This method is useless.
icy.system.thread.Processor.limitWaitingTask(int, int) Not anymore supported !
icy.system.thread.Processor.limitWaitingTask(Runnable, int) This method is useless.
icy.plugin.PluginDescriptor.load(boolean) Use `PluginDescriptor.loadDescriptor()` or `PluginDescriptor.loadAll()` instead
icy.file.Loader.load(File) Use `Loader.load(String, boolean)` instead.
icy.file.Loader.load(File[], boolean, boolean, boolean) Use `Loader.load(List, boolean, boolean, boolean)` instead.
icy.file.Loader.load(File, boolean) Use `Loader.load(String, boolean)` instead.
icy.file.Loader.load(List) Use `Loader.load(List, boolean, boolean, boolean)` instead.
icy.file.Loader.load(List, boolean) Use `Loader.load(List, boolean, boolean, boolean)` instead.
icy.file.Loader.load(List, boolean, boolean) Use `Loader.load(List, boolean, boolean, boolean)` instead.
icy.image.ImageUtil.loadImage(File) Use `ImageUtil.load(File)` instead
icy.file.Loader.loadImage(File) Use `Loader.loadImage(String)` instead.
icy.image.ImageUtil.loadImage(File, boolean) Use `ImageUtil.load(File, boolean)` instead
icy.file.Loader.loadImage(File, int, int) Use `Loader.loadImage(String, int, int)` instead.
icy.file.Loader.loadImage(IFormatReader) Use `IcyBufferedImage.createFrom(IFormatReader, int, int)` with Z and T parameters set to 0.
icy.file.Loader.loadImage(IFormatReader, int, int) Use `IcyBufferedImage.createFrom(IFormatReader, int, int)` instead.
icy.image.ImageUtil.loadImage(InputStream) Use `ImageUtil.load(InputStream)` instead
icy.image.ImageUtil.loadImage(InputStream, boolean) Use `ImageUtil.load(InputStream, boolean)` instead
icy.image.ImageUtil.loadImage(String) Use `ImageUtil.load(String)` instead
icy.image.ImageUtil.loadImage(String, boolean) Use `ImageUtil.load(String, boolean)` instead
icy.file.Loader.loadImage(String, int, int) Use `Loader.loadImage(String, int, int, int)` instead.
icy.image.ImageUtil.loadImage(URL) Use `ImageUtil.load(URL)` instead
icy.image.ImageUtil.loadImage(URL, boolean) Use `ImageUtil.load(URL, boolean)` instead
icy.file.Loader.loadSequence(File) Use `Loader.loadSequence(File, int, boolean)` instead.
icy.file.Loader.loadSequence(File[], int, boolean)
icy.file.Loader.loadSequence(File, boolean) Use `Loader.loadSequence(File, int, boolean)` instead.
icy.file.Loader.loadSequence(File, int, boolean) Use `Loader.loadSequence(String, int, boolean)` instead.
icy.file.Loader.loadSequence(List, boolean, boolean) Use `Loader.loadSequence(SequenceFileImporter, List, boolean, boolean)` instead
icy.file.Loader.loadSequences(File[], int[], boolean, boolean, boolean) Use `Loader.loadSequences(File[], int, boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(File[], int, boolean, boolean, boolean) Use `Loader.loadSequences(List, int, boolean, boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(File, int[], boolean) Use `Loader.loadSequence(File, int, boolean)` instead.
icy.file.Loader.loadSequences(File, List) Use `Loader.loadSequences(File, int[], boolean)` instead.
icy.file.Loader.loadSequences(File, List, boolean) Use `Loader.loadSequences(File, int[], boolean)` instead.
icy.file.Loader.loadSequences(File, List, boolean, boolean) Use `Loader.loadSequences(File, int[], boolean)` instead.
icy.file.Loader.loadSequences(List, boolean) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(List, boolean, boolean) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(List, boolean, boolean, boolean) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(List, List) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(List, List, boolean) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(List, List, boolean, boolean) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.file.Loader.loadSequences(List, List, boolean, boolean, boolean) Use `Loader.loadSequences(File[], int[], boolean, boolean, boolean)` instead.
icy.util.XLSUtil.loadWorkbook(File) Use `XLSUtil.loadWorkbookForRead(File)` or `XLSUtil.loadWorkbookForWrite(File)` depending your needs.
plugins.kernel.canvas.VtkCanvas.lock() Use `getVtkPanel().lock()` instead.
icy.vtk.VtkJoglPanel.Lock() Use `VtkJoglPanel.lock()` instead
icy.type.collection.array.Array2DUtil.longArrayToSafeArray(long[][], int, Object, int, int, boolean) Use `Array2DUtil.longArrayToSafeArray(long[][], int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.longArrayToSafeArray(long[][], Object, boolean) Use `Array2DUtil.longArrayToSafeArray(long[][], Object, boolean, boolean)` instead.
icy.type.collection.array.Array1DUtil.longArrayToSafeArray(long[], int, Object, int, int, boolean) Use `Array1DUtil.longArrayToSafeArray(long[], int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.Array1DUtil.longArrayToSafeArray(long[], Object, boolean) Use `Array1DUtil.longArrayToSafeArray(long[], Object, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.longArrayToSafeByteArray(long[][], int, byte[][], int, int, boolean) Use `Array2DUtil.longArrayToSafeByteArray(long[][], int, byte[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.longArrayToSafeByteArray(long[], int, byte[], int, int, boolean) Use `Array1DUtil.longArrayToSafeByteArray(long[], int, byte[], int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.longArrayToSafeIntArray(long[][], int, int[][], int, int, boolean) Use `Array2DUtil.longArrayToSafeIntArray(long[][], int, int[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.longArrayToSafeIntArray(long[], int, int[], int, int, boolean) Use `Array1DUtil.longArrayToSafeIntArray(long[], int, int[], int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.longArrayToSafeShortArray(long[][], int, short[][], int, int, boolean) Use `Array2DUtil.longArrayToSafeShortArray(long[][], int, short[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.longArrayToSafeShortArray(long[], int, short[], int, int, boolean) Use `Array1DUtil.longArrayToSafeShortArray(long[], int, short[], int, int, boolean, boolean)` instead.
icy.math.MathUtil.max(byte[], boolean) use `ArrayMath.max(byte[], boolean)` instead
icy.math.MathUtil.max(double[]) use `ArrayMath.max(double[])` instead
icy.math.MathUtil.max(float[]) use `ArrayMath.max(float[])` instead
icy.math.MathUtil.max(int[], boolean) use `ArrayMath.max(int[], boolean)` instead
icy.math.MathUtil.max(Object, boolean) use `ArrayMath.max(Object, boolean)` instead
icy.math.MathUtil.max(short[], boolean) use `ArrayMath.max(short[], boolean)` instead
icy.roi.ROI2DShape.merge(List, ShapeUtil.BooleanOperator) Use `ROIUtil#merge(List, BooleanOperator)` instead.
icy.roi.ROI2D.merge(ROI2D[], ShapeUtil.ShapeOperation) Use `ROIUtil.merge(List, icy.util.ShapeUtil.BooleanOperator)` instead.
icy.roi.ROI2DShape.merge(ROI2DShape[], ShapeUtil.ShapeOperation) Use `ROIUtil#merge(List, BooleanOperator)` instead.
icy.util.ShapeUtil.merge(Shape[], ShapeUtil.ShapeOperation) Use `ShapeUtil.merge(List, BooleanOperator)` instead.
icy.math.MathUtil.min(byte[], boolean) use `ArrayMath.min(byte[], boolean)` instead
icy.math.MathUtil.min(double[]) use `ArrayMath.min(double[])` instead
icy.math.MathUtil.min(float[]) use `ArrayMath.min(float[])` instead
icy.math.MathUtil.min(int[], boolean) use `ArrayMath.min(int[], boolean)` instead
icy.math.MathUtil.min(Object, boolean) use `ArrayMath.min(Object, boolean)` instead
icy.math.MathUtil.min(short[], boolean) use `ArrayMath.min(short[], boolean)` instead
icy.painter.Overlay.mouseClick(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mouseClick(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Overlay.mouseDrag(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mouseDrag(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Anchor2D.mouseDrag(MouseEvent, Point2D, IcyCanvas)
icy.painter.Overlay.mouseEntered(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mouseEntered(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Overlay.mouseExited(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mouseExited(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Overlay.mouseMove(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mouseMove(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Anchor2D.mouseMove(MouseEvent, Point2D, IcyCanvas)
icy.painter.Overlay.mousePressed(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mousePressed(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Anchor2D.mousePressed(MouseEvent, Point2D, IcyCanvas)
icy.painter.Overlay.mouseReleased(MouseEvent, Point2D, IcyCanvas) Use `Overlay.mouseReleased(MouseEvent, Point5D.Double, IcyCanvas)` instead
icy.painter.Anchor2D.mouseReleased(MouseEvent, Point2D, IcyCanvas)
icy.painter.Overlay.mouseWheelMoved(MouseWheelEvent, Point2D, IcyCanvas) Use `Overlay.mouseWheelMoved(MouseWheelEvent, Point5D.Double, IcyCanvas)` instead
icy.file.FileUtil.move(File, File, boolean) Use `FileUtil.rename(File, File, boolean)` instead
icy.file.FileUtil.move(File, File, boolean, boolean) Use `FileUtil.move(File, File, boolean)` instead
icy.file.FileUtil.move(String, String, boolean) Use `FileUtil.rename(String, String, boolean)` instead
icy.file.FileUtil.move(String, String, boolean, boolean) Use `FileUtil.move(String, String, boolean)` instead
icy.math.ArrayMath.multiply(double, double[], double[]) use `ArrayMath.multiply(double[] , double , double[])` instead
icy.roi.ROI.nameChanged() Use `ROI.propertyChanged(String)` instead.
icy.common.Random.nextBoolean() Use `Random.nextBoolean()` instead
icy.common.Random.nextDouble() Use `Random.nextDouble()` instead
icy.common.Random.nextFloat() Use `Random.nextFloat()` instead
icy.common.Random.nextInt() Use `Random.nextInt()` instead
icy.common.Random.nextInt(int) Use `Random.nextInt(int)` instead
icy.common.Random.nextLong() Use `Random.nextLong()` instead
icy.file.SequenceFileGroupImporter.open(String, int) Better to use `SequenceFileGroupImporter.open(Collection, int)` or `#open(SequenceFileGroup, int)` for this importer
icy.network.NetworkUtil.openURL(String) Use `NetworkUtil.openBrowser(String)` instead.
icy.network.NetworkUtil.openURL(URI) Use `NetworkUtil.openBrowser(URI)` instead.
icy.network.NetworkUtil.openURL(URL) Use `NetworkUtil.openBrowser(URL)` instead.
plugins.kernel.roi.roi2d.ROI2DArea.optimizeBounds(boolean) Use `ROI2DArea.optimizeBounds()` instead.
icy.gui.main.IcyDesktopPane.organizeTile() Use `IcyDesktopPane.organizeTile(int)` instead.
icy.gui.util.GuiUtil.paintBackGround(Component, Graphics) Use `GraphicsUtil.paintIcyBackGround(Component, Graphics)` instead
icy.gui.util.GuiUtil.paintBackGround(Image) Use `GraphicsUtil.paintIcyBackGround(Component, Graphics)` instead
icy.gui.util.GuiUtil.paintBackGround(int, int, Graphics) Use `GraphicsUtil.paintIcyBackGround(int, int, Graphics)` instead
icy.roi.ROI.painterChanged()
icy.sequence.Sequence.painterChanged(Painter) Use `Sequence.overlayChanged(Overlay)` instead.
icy.painter.PainterListener.painterChanged(PainterEvent) Use `Overlay` class and `OverlayListener.overlayChanged(OverlayEvent)` event instead.
plugins.kernel.canvas.VtkCanvas.pick(int, int) use `VtkCanvas.pickProp(int, int)` instead.
icy.vtk.IcyVtkPanel.pickActor(int, int) Use `IcyVtkPanel.pickActor(int, int)` instead
icy.type.TypeUtil.pixelTypeToDataType(PixelType) use `DataType.getDataTypeFromPixelType(PixelType)` instead
icy.preferences.IcyPreferences.pluginRoot(Plugin) Use `PluginsPreferences.root(Plugin)` instead.
icy.preferences.IcyPreferences.pluginsRoot() Use `PluginsPreferences.getPreferences()` instead.
icy.vtk.VtkUtil.polyDataToImageData(vtkPolyData, double[]) Use `VtkUtil.getBinaryImageData(vtkPolyData, double[])` instead.
icy.network.NetworkUtil.postData(String, HashMap) Use `NetworkUtil.postData(String, Map)` instead.
icy.network.NetworkUtil.postData(String, HashMap, String, String) Use `NetworkUtil.postData(String, Map, String, String)` instead.
icy.gui.lut.ScalerPanel.refreshHistoData() Use `ScalerPanel.refreshHistogram()` instead.
icy.gui.main.MainInterfaceGui.registerExternalFrame(JFrame)
icy.gui.main.MainInterfaceBatch.registerExternalFrame(JFrame)
icy.gui.main.MainInterface.registerExternalFrame(JFrame)
icy.workspace.WorkspaceLoader.reload_asynch() Use `WorkspaceLoader.reloadAsynch()` instead.
icy.plugin.PluginLoader.reload(boolean) Use `PluginLoader.reload()` instead.
plugins.kernel.roi.roi2d.ROI2DArea.remove(BooleanMask2D) Use `ROI2DArea.subtract(BooleanMask2D)` instead
plugins.kernel.roi.roi2d.ROI2DArea.remove(ROI2DArea) Use `ROI2DArea.subtract(ROI2DArea)` instead
icy.util.XMLUtil.removeAllChilds(Node) Use `XMLUtil.removeAllChildren(Node)` instead
icy.sequence.Sequence.removeAllImage() Use `Sequence.removeAllImages()` instead.
icy.sequence.Sequence.removeAllImage(int) Use `Sequence.removeAllImages(int)` instead.
icy.painter.Anchor2D.removeAnchorListener(Anchor2D.Anchor2DListener) Use `Anchor2D.removePositionListener(Anchor2DPositionListener)` or `Overlay.removeOverlayListener(OverlayListener)` instead.
icy.sequence.MetaDataUtil.removeChannel(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.removeChannel(OMEXMLMetadata, int, int)` instead
icy.util.XMLUtil.removeChilds(Node, String) Use `XMLUtil.removeChildren(Node, String)` instead
icy.system.thread.Processor.removeFirstWaitingTask(int) Not anymore supported. USe `Processor.removeFirstWaitingTask(Runnable)` or `Processor.removeFirstWaitingTask(Callable)` instead.
icy.gui.main.MainInterfaceGui.removeFocusedSequenceListener(FocusedSequenceListener)
icy.gui.main.MainInterfaceBatch.removeFocusedSequenceListener(FocusedSequenceListener)
icy.gui.main.MainInterface.removeFocusedSequenceListener(FocusedSequenceListener) Use `MainInterface.removeActiveSequenceListener(ActiveSequenceListener)` instead.
icy.gui.main.MainInterfaceGui.removeFocusedViewerListener(FocusedViewerListener)
icy.gui.main.MainInterfaceBatch.removeFocusedViewerListener(FocusedViewerListener)
icy.gui.main.MainInterface.removeFocusedViewerListener(FocusedViewerListener) Use `MainInterface.removeActiveViewerListener(ActiveViewerListener)` instead.
icy.canvas.IcyCanvas.removeLayer(Painter) Use `IcyCanvas.removeLayer(Overlay)` instead.
icy.canvas.IcyCanvas.removeLayersListener(CanvasLayerListener) Use `IcyCanvas.removeLayerListener(CanvasLayerListener)` instead.
icy.painter.Anchor2D.removeListener(Anchor2D.Anchor2DListener) Use `Anchor2D.removePositionListener(Anchor2DPositionListener)` or `Overlay.removeOverlayListener(OverlayListener)` instead.
icy.gui.main.MainInterfaceGui.removeListener(MainListener)
icy.gui.main.MainInterfaceBatch.removeListener(MainListener)
icy.gui.main.MainInterface.removeListener(MainListener) Use removeGlobalXXXListener instead.
icy.system.thread.Processor.removeListener(Processor.ProcessorEventListener) Useless...
icy.sequence.Sequence.removePainter(Painter) Use `Sequence.removeOverlay(Overlay)` instead.
icy.painter.AbstractPainter.removePainterListener(PainterListener) Use `Overlay.removeOverlayListener(OverlayListener)` instead.
icy.sequence.MetaDataUtil.removePlane(OMEXMLMetadataImpl, int, int, int, int) Use `MetaDataUtil.removePlane(OMEXMLMetadata, int, int, int, int)` instead
icy.sequence.MetaDataUtil.removePlanes(OMEXMLMetadataImpl, int, int, int, int) Use `MetaDataUtil.removePlanes(OMEXMLMetadata, int, int, int, int)` instead
plugins.kernel.roi.roi2d.ROI2DShape.removePointAt(IcyCanvas, Point2D) Use `ROI2DShape.removeSelectedPoint(IcyCanvas)` instead.
plugins.kernel.roi.roi2d.ROI2DArea.removePointAt(IcyCanvas, Point2D) Use `ROI2DArea.removeBrush(Point2D)` instead.
icy.system.thread.Processor.removeTask(Runnable) Use `Processor.removeFirstWaitingTask(Runnable)` instead.
icy.sequence.Sequence.removeVolumetricImage(int) Use `Sequence.removeAllImages(int)` instead.
icy.system.thread.Processor.removeWaitingTasks(int) Not anymore supported. USe `Processor.removeWaitingTasks(Runnable)` or `Processor.removeWaitingTasks(Callable)` instead.
icy.file.FileUtil.rename(File, File, boolean, boolean) Use `FileUtil.rename(File, File, boolean)` instead
icy.file.FileUtil.rename(String, String, boolean, boolean) Use `FileUtil.rename(String, String, boolean)` instead
icy.vtk.VtkJoglPanel.Render() Use `VtkJoglPanel.render()` instead.
icy.network.NetworkUtil.report(HashMap) Use `NetworkUtil.report(Map)` instead.
icy.system.thread.SingleProcessor.requestProcess(Runnable) use `Processor.submit(Runnable)` instead.
icy.system.thread.SingleProcessor.requestProcess(Runnable, boolean) use `Processor.submit(Runnable, boolean)` instead
icy.roi.ROI.roiChanged() Use `ROI.roiChanged(boolean)` instead.
icy.sequence.Sequence.roiChanged() Use `Sequence.roiChanged(ROI)` method instead.
icy.roi.ROI.roiChanged(ROIEvent.ROIPointEventType, Object) Use `ROI.roiChanged(boolean)` instead
icy.file.Saver.save(IFormatWriter, Sequence, File, int, int, int, int, int, boolean, boolean) Use `Saver.save(IFormatWriter, Sequence, File, int, boolean, boolean, boolean)` instead.
icy.file.Saver.save(IFormatWriter, Sequence, File, int, int, int, int, int, boolean, boolean, boolean) Use `Saver.save(IFormatWriter, Sequence, File, int, boolean, boolean, boolean)` instead.
icy.file.Saver.save(Sequence, File, boolean) Use `Saver.save(Sequence, File, boolean, boolean)` instead.
icy.file.Saver.save(Sequence, File, int, int, int, int, int, boolean) Use `Saver.save(Sequence, File, int, boolean, boolean)` instead.
icy.file.Saver.save(Sequence, File, int, int, int, int, int, boolean, boolean) Use `Saver.save(Sequence, File, int, boolean, boolean)` instead.
icy.file.Saver.saveImage(byte[], int, int, int, int, boolean, File, boolean) Use `Saver.saveImage(byte[], int, int, int, DataType, File, boolean)` instead
icy.image.ImageUtil.saveImage(RenderedImage, String, File) Use `ImageUtil.save(RenderedImage, String, File)` instead
icy.image.ImageUtil.saveImage(RenderedImage, String, String) Use `ImageUtil.save(RenderedImage, String, String)` instead
icy.image.ImageUtil.scaleImage(Image, int, int) Use `ImageUtil.scale(Image, int, int)` instead.
icy.image.ImageUtil.scaleImageQuality(Image, int, int) Use `ImageUtil.scaleQuality(Image, int, int)` instead.
icy.search.SearchResultProducer.search(String[], SearchResultConsumer) Use `SearchResultProducer.search(String, SearchResultConsumer)` instead.
icy.file.Loader.selectSerie(SequenceFileImporter, String, OMEXMLMetadataImpl, int) Use `Loader.selectSerie(SequenceFileImporter, String, OMEXMLMetadata, int)` instead
icy.canvas.Layer.setAlpha(float) Use `Layer.setOpacity(float)` instead.
icy.sequence.Sequence.setAWTDispatching(boolean) Don't use it, events should stay on current thread
plugins.kernel.canvas.VtkCanvas.setBoundingBoxColor(Color) USe `VtkCanvas.setBackgroundColorInternal(Color)`
icy.roi.BooleanMask2D.setBounds(Rectangle) Use `BooleanMask2D.moveBounds(Rectangle)` instead.
icy.gui.viewer.Viewer.setC(int) Use `Viewer.setPositionZ(int)` instead.
icy.canvas.IcyCanvas.setC(int) uses setPositionC(int) instead
icy.gui.viewer.Viewer.setCanvas(IcyCanvas) Use `Viewer.setCanvas(String)` instead.
icy.plugin.PluginDescriptor.setChangesLog(String) use `PluginDescriptor.setChangeLog(String)`
icy.sequence.MetaDataUtil.setChannelName(OMEXMLMetadataImpl, int, int, String) Use `MetaDataUtil.setChannelName(OMEXMLMetadata, int, int, String)` instead
icy.image.lut.LUT.LUTChannel.setColorMap(IcyColorMap) Use `LUT.LUTChannel.setColorMap(IcyColorMap, boolean)` instead.
icy.image.IcyBufferedImage.setColormap(int, IcyColorMap) Use `IcyBufferedImage.setColorMap(int, IcyColorMap, boolean)` instead.
icy.image.colorspace.IcyColorSpace.setColormap(int, IcyColorMap) Use `IcyColorSpace.setColorMap(int, IcyColorMap, boolean)` instead.
icy.image.colormodel.IcyColorModel.setColormap(int, IcyColorMap) Use `IcyColorModel.setColorMap(int, IcyColorMap, boolean)` instead.
icy.vtk.VtkBinaryVolume.setColorMap(vtkColorTransferFunction, int) Use `VtkBinaryVolume.setColor(Color)` instead.
icy.image.IcyBufferedImage.setColormaps(BufferedImage) Use `IcyBufferedImage.setColorMaps(BufferedImage)` instead (different case).
icy.image.colorspace.IcyColorSpace.setColormaps(ColorModel) Use `IcyColorSpace.setColorMaps(ColorModel)` instead (different case).
icy.image.colormodel.IcyColorModel.setColormaps(ColorModel) Use `IcyColorModel.setColorMaps(ColorModel)` instead (different case).
icy.image.colorspace.IcyColorSpace.setColormaps(IcyColorSpace) Use `IcyColorSpace.setColorMaps(IcyColorSpace, boolean)` instead.
icy.image.lut.LUT.setColormaps(LUT) USe `LUT.setColorMaps(LUT, boolean)` instead.
icy.image.IcyBufferedImage.setComponentAbsBounds(int, double[]) Use `IcyBufferedImage.setChannelTypeBounds(int, double, double)` instead.
icy.image.IcyBufferedImage.setComponentAbsBounds(int, double, double) Use `IcyBufferedImage.setChannelTypeBounds(int, double, double)` instead.
icy.sequence.Sequence.setComponentAbsBoundsAutoUpdate(boolean) Use `Sequence.setAutoUpdateChannelBounds(boolean)` instead.
icy.image.IcyBufferedImage.setComponentAbsMaxValue(int, double) Use `IcyBufferedImage.setChannelTypeMax(int, double)` instead.
icy.image.IcyBufferedImage.setComponentAbsMinValue(int, double) Use `IcyBufferedImage.setChannelTypeMin(int, double)` instead.
icy.image.IcyBufferedImage.setComponentsAbsBounds(double[][]) Use `IcyBufferedImage.setChannelsTypeBounds(double[][])` instead.
icy.image.IcyBufferedImage.setComponentsUserBounds(double[][]) Use `IcyBufferedImage.setChannelsBounds(double[][])` instead.
icy.image.IcyBufferedImage.setComponentUserBounds(int, double[]) Use `IcyBufferedImage.setChannelBounds(int, double, double)` instead.
icy.image.IcyBufferedImage.setComponentUserBounds(int, double, double) Use `IcyBufferedImage.setChannelBounds(int, double, double)` instead
icy.sequence.Sequence.setComponentUserBoundsAutoUpdate(boolean) Use `Sequence.setAutoUpdateChannelBounds(boolean)` instead.
icy.image.IcyBufferedImage.setComponentUserMaxValue(int, double) Use `IcyBufferedImage.setChannelMax(int, double)` instead.
icy.image.IcyBufferedImage.setComponentUserMinValue(int, double) Use `IcyBufferedImage.setChannelMin(int, double)` instead.
icy.gui.component.IcyTextField.setConsumeCharKeyPressEvent(boolean) Should not be used (keep it to false)
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.setCursorColor(Color) Use `ROI2DArea.ROI2DAreaPainter.setBrushColor(Color)` instead
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.setCursorPosition(Point2D) Use `ROI2DArea.ROI2DAreaPainter.setBrushPosition(Point2D)` instead.
plugins.kernel.roi.roi2d.ROI2DArea.ROI2DAreaPainter.setCursorSize(float) Use `ROI2DArea.ROI2DAreaPainter.setBrushSize(float)` instead
icy.sequence.MetaDataUtil.setDataType(OMEXMLMetadataImpl, int, DataType) Use `MetaDataUtil.setDataType(OMEXMLMetadata, int, DataType)` instead
icy.image.colormap.IcyColorMap.setDefaultAlphaFor3D() Use `IcyColorMap.setAlphaToLinear3D()` instead
icy.system.thread.Processor.setDefaultThreadName(String) Use `Processor.setThreadName(String)` instead
icy.canvas.IcyCanvas.setDrawLayers(boolean) Use `IcyCanvas.setLayersVisible(boolean)` instead.
icy.roi.ROI.setEditable(boolean) Use `ROI.setReadOnly(boolean)` instead.
icy.gui.util.GuiUtil.setEnableContainer(Container, boolean) what was the goal of this method ???
icy.painter.Overlay.setFixed(boolean) Use `Overlay.setCanBeRemoved(boolean)` instead.
icy.canvas.Layer.setFixed(boolean) Use `Layer.setCanBeRemoved(boolean)` instead.
icy.gui.main.MainInterfaceGui.setFocusedViewer(Viewer)
icy.gui.main.MainInterface.setFocusedViewer(Viewer) Use `MainInterface.setActiveViewer(Viewer)` instead.
icy.sequence.MetaDataUtil.setImageID(OMEXMLMetadataImpl, int, String) Use `MetaDataUtil.setImageID(OMEXMLMetadata, int, String)` instead
icy.plugin.PluginLoader.setLogError(boolean)
icy.vtk.VtkBinaryVolume.setLUT(LUT.LUTChannel, int) Use `VtkBinaryVolume.setColor(Color)` and `VtkBinaryVolume.setOpacity(double)` instead.
icy.vtk.VtkBinaryVolume.setLUT(LUT) Use `VtkBinaryVolume.setColor(Color)` and `VtkBinaryVolume.setOpacity(double)` instead.
icy.gui.viewer.Viewer.setLutPanel(IcyLutViewer) Use `Viewer.setLutViewer(LUTViewer)` instead.
icy.gui.frame.progress.DownloadFrame.setMessageBase(String) use setMessage(..) instead
icy.sequence.Sequence.setMetaData(OMEXMLMetadataImpl) Use `Sequence.setMetaData(OMEXMLMetadata)` instead.
icy.sequence.MetaDataUtil.setMetaData(OMEXMLMetadataImpl, int, int, int, int, int, DataType, boolean) Use `MetaDataUtil.setMetaData(OMEXMLMetadata, int, int, int, int, int, DataType, boolean)` instead
icy.canvas.IcyCanvas2D.setMouseCanvasPos(int, int) Use `IcyCanvas2D.setMousePos(int, int)` instead
icy.canvas.IcyCanvas2D.setMouseCanvasPos(Point) Use `IcyCanvas.setMousePos(Point)` instead.
icy.roi.ROI.setMousePos(Point2D) Use `getOverlay().setMousePos(..)` instead.
icy.roi.ROI.ROIPainter.setMousePos(Point5D) Better to retrieve mouse position from the `IcyCanvas` object.
icy.sequence.MetaDataUtil.setName(OMEXMLMetadataImpl, int, String) Use `MetaDataUtil.setName(OMEXMLMetadata, int, String)` instead
icy.sequence.Sequence.setNode(String) Use `Sequence.getNode(String)` instead.
icy.sequence.MetaDataUtil.setNumChannel(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.setNumChannel(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.setNumSerie(OMEXMLMetadataImpl, int) Use `MetaDataUtil.setNumSerie(OMEXMLMetadata, int)` instead
icy.sequence.MetaDataUtil.setNumSerie(OMEXMLMetadata, int) Use `MetaDataUtil.setNumSeries(OMEXMLMetadata, int)` instead
icy.vtk.VtkBinaryVolume.setOpacityMap(vtkPiecewiseFunction, int) Use `VtkBinaryVolume.setOpacity(double)` instead.
plugins.kernel.canvas.VtkCanvas.setPickOnMouseMove(boolean) Always enable now
icy.sequence.MetaDataUtil.setPixelSizeX(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.setPixelSizeX(OMEXMLMetadata, int, double)` instead
icy.sequence.MetaDataUtil.setPixelSizeY(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.setPixelSizeY(OMEXMLMetadata, int, double)` instead
icy.sequence.MetaDataUtil.setPixelSizeZ(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.setPixelSizeZ(OMEXMLMetadata, int, double)` instead
plugins.kernel.roi.roi2d.ROI2DPolygon.setPoints(ArrayList) Use `ROI2DPolygon.setPoints(List)` instead.
plugins.kernel.roi.roi2d.ROI2DPolyLine.setPoints(ArrayList) Use `ROI2DPolyLine.setPoints(List)` instead.
icy.roi.ROI2D.setPosition(Point2D) Use `ROI2D.setPosition2D(Point2D)` instead.
icy.gui.frame.progress.ProgressFrame.setProgress(int) use `ProgressFrame.setPosition(double)` instead
icy.roi.ROI.setPropertyValue(String, Object) use `ROI.setProperty(String, String)`
icy.roi.ROI.setROIsFromXML(Node, List) Use `ROI.saveROIsToXML(Node, List)` instead
icy.roi.ROI.setSelected(boolean, boolean) Use `ROI.setSelected(boolean)` or `Sequence.setSelectedROI(ROI)` depending you want exclusive selection or not.
icy.roi.ROI.setSelectedColor(Color) selected color is automatically calculated.
icy.roi.ROI.ROIPainter.setSelectedColor(Color) Selected color is now automatically calculated
icy.sequence.Sequence.setSelectedROI(ROI, boolean) Use `Sequence.setSelectedROI(ROI)` instead.
icy.sequence.Sequence.setSelectedROIs(ArrayList) Use `Sequence.setSelectedROIs(List)` instead.
icy.gui.component.sequence.SequenceChooser.setSequenceSelected(Sequence) use `SequenceChooser.setSelectedSequence(Sequence)` instead
icy.sequence.MetaDataUtil.setSizeC(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.setSizeC(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.setSizeT(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.setSizeT(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.setSizeX(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.setSizeX(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.setSizeY(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.setSizeY(OMEXMLMetadata, int, int)` instead
icy.sequence.MetaDataUtil.setSizeZ(OMEXMLMetadataImpl, int, int) Use `MetaDataUtil.setSizeZ(OMEXMLMetadata, int, int)` instead
plugins.kernel.roi.roi3d.ROI3DArea.setSlice(int, ROI2D, boolean) Use one of these methods instead : `#setSlice(int, ROI2DArea)`, `ROI3DArea.setSlice(int, BooleanMask2D)`, `#add(int, ROI2DArea)` or `ROI3DArea.add(BooleanMask3D)`
icy.gui.viewer.Viewer.setT(int) Use `Viewer.setPositionT(int)` instead.
icy.canvas.IcyCanvas.setT(int) uses setPositionT(int) instead
icy.sequence.Sequence.setT(int) Use this piece of code instead : `for(Viewer v: Icy.getMainInterface().getViewers(sequence))` `v.setT(...)`
icy.sequence.MetaDataUtil.setTimeInterval(OMEXMLMetadataImpl, int, double) Use `MetaDataUtil.setTimeInterval(OMEXMLMetadata, int, double)` instead
icy.gui.frame.TitledFrame.setTitleVisible(boolean) Title always hidden now
plugins.kernel.roi.roi3d.ROI3DStack.ROI3DStackPainter.setUseChildColor(boolean) this property does not exist anymore
icy.type.collection.array.ArrayUtil.setValue(Object, int, double) use `Array1DUtil.setValue(Object, int, double)` instead
icy.type.collection.array.ArrayUtil.setValue(Object, int, int, double) use `Array1DUtil.setValue(Object, int, int,double)` instead
icy.type.collection.array.Array1DUtil.setValue(Object, int, int, double) use `Array1DUtil.setValue(Object, int, DataType, double)` instead
plugins.kernel.canvas.VtkCanvas.setVolumeDistanceSample(int) Use `VtkCanvas.setVolumeSample(int)` instead
plugins.kernel.canvas.VtkCanvas.setVolumeMapperType(VtkImageVolume.VtkVolumeMapperType) Use `VtkCanvas.setGPURendering(boolean)` instead
icy.canvas.Canvas3D.setVolumeScaleX(double) Use `Canvas3D.setVolumeScale(double, double, double)` instead
icy.canvas.Canvas3D.setVolumeScaleY(double) Use `Canvas3D.setVolumeScale(double, double, double)` instead
icy.canvas.Canvas3D.setVolumeScaleZ(double) Use `Canvas3D.setVolumeScale(double, double, double)` instead
icy.canvas.Canvas3D.setXScaling(double)
icy.canvas.Canvas3D.setYScaling(double)
icy.gui.viewer.Viewer.setZ(int) Use `Viewer.setPositionZ(int)` instead.
icy.canvas.IcyCanvas.setZ(int) uses setPositionZ(int) instead
icy.canvas.Canvas2D.setZoom(float) use setScale(...) instead
icy.canvas.Canvas3D.setZScaling(double)
icy.type.collection.array.ArrayUtil.shortArrayToArray1D(short[], int, Object, int, int, boolean) use Array1DUtil.shortArrayToArray instead
icy.type.collection.array.ArrayUtil.shortArrayToArray1D(short[], Object, boolean) use Array1DUtil.shortArrayToArray instead
icy.type.collection.array.ArrayUtil.shortArrayToArray2D(short[][], int, Object, int, int, boolean) use Array2DUtil.shortArrayToArray instead
icy.type.collection.array.ArrayUtil.shortArrayToArray2D(short[][], Object, boolean) use Array2DUtil.shortArrayToArray instead
icy.type.collection.array.Array2DUtil.shortArrayToSafeArray(short[][], int, Object, int, int, boolean) Use `Array2DUtil.shortArrayToSafeArray(short[][], int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.Array2DUtil.shortArrayToSafeArray(short[][], Object, boolean) Use `Array2DUtil.shortArrayToSafeArray(short[][], Object, boolean, boolean)` instead.
icy.type.collection.array.Array1DUtil.shortArrayToSafeArray(short[], int, Object, int, int, boolean) Use `Array1DUtil.shortArrayToSafeArray(short[], int, Object, int, int, boolean, boolean)` instead.
icy.type.collection.array.Array1DUtil.shortArrayToSafeArray(short[], Object, boolean) Use `Array1DUtil.shortArrayToSafeArray(short[], Object, boolean, boolean)` instead.
icy.type.collection.array.ArrayUtil.shortArrayToSafeArray1D(short[], int, Object, int, int, boolean) use Array1DUtil.shortArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.shortArrayToSafeArray1D(short[], Object, boolean) use Array1DUtil.shortArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.shortArrayToSafeArray2D(short[][], int, Object, int, int, boolean) use Array2DUtil.shortArrayToSafeArray instead
icy.type.collection.array.ArrayUtil.shortArrayToSafeArray2D(short[][], Object, boolean) use Array2DUtil.shortArrayToSafeArray instead
icy.type.collection.array.Array2DUtil.shortArrayToSafeByteArray(short[][], int, byte[][], int, int, boolean) Use `Array2DUtil.shortArrayToSafeByteArray(short[][], int, byte[][], int, int, boolean, boolean)` instead
icy.type.collection.array.Array1DUtil.shortArrayToSafeByteArray(short[], int, byte[], int, int, boolean) Use `Array1DUtil.shortArrayToSafeByteArray(short[], int, byte[], int, int, boolean, boolean)` instead.
icy.type.DataType.sizeOf() Use `DataType.getSize()` instead
icy.type.TypeUtil.sizeOf(int) use `DataType` method instead
icy.plugin.PluginLauncher.start(String) Use `PluginLauncher.start(PluginDescriptor)` instead. You can retrieve a `PluginDescriptor` from the class name by using `PluginLoader.getPlugin(String)` method.
icy.plugin.PluginLauncher.startSafe(String) Use `PluginLauncher.startSafe(PluginDescriptor)` instead. You can retrieve a `PluginDescriptor` from the class name by using `PluginLoader.getPlugin(String)` method.
icy.type.collection.array.Array1DUtil.stringToArray(String, int) use `Array1DUtil.stringToArray(String, DataType)` instead
icy.type.collection.array.Array1DUtil.stringToArray(String, int, boolean, String) use `Array1DUtil.stringToArray(String, DataType, boolean, String)` instead
icy.type.collection.array.ArrayUtil.stringToArray1D(String, int) use `ArrayUtil.stringToArray1D(String, DataType)` instead
icy.type.collection.array.ArrayUtil.stringToArray1D(String, int, boolean, String) use `ArrayUtil.stringToArray1D(String, DataType, boolean , String )` instead
icy.system.thread.Processor.submit(Callable, boolean) Use `Processor.submit(Callable)` instead and ThreadUtil.invokeNow(..) where you need it.
icy.system.thread.Processor.submit(Runnable, boolean) Use `Processor.submit(Runnable)` instead and ThreadUtil.invokeNow(..) where you need it.
icy.system.thread.Processor.submit(Runnable, T, boolean) Use `Processor.submit(Runnable, Object)` instead and ThreadUtil.invokeNow(..) where you need it.
icy.roi.ROI2D.substract(ROI2D, ROI2D) Use `ROI.getSubtraction(ROI)` instead.
icy.roi.ROI2DShape.substract(ROI2DShape, ROI2DShape) Use `ROI.getSubtraction(ROI)` instead.
icy.roi.ROI2D.subtract(ROI2D, ROI2D) Use `ROI.getSubtraction(ROI)` instead.
icy.roi.ROI2DShape.subtract(ROI2DShape, ROI2DShape) Use `ROI.getSubtraction(ROI)` instead.
icy.type.collection.array.ArrayUtil.toBooleanArray1D(byte[]) use `Array1DUtil.toBooleanArray(byte[])` instead
icy.type.collection.array.ArrayUtil.toBooleanArray1D(byte[], boolean[], int) use `Array1DUtil.toBooleanArray(byte[], boolean[], int)` instead
icy.type.collection.array.ArrayUtil.toByteArray1D(boolean[]) use `Array1DUtil.toByteArray(boolean[])` instead
icy.type.collection.array.ArrayUtil.toByteArray1D(boolean[], byte[], int) use `Array1DUtil.toByteArray(boolean[], byte[], int)` instead
icy.image.ImageUtil.toGrayImage(Image) Use `ImageUtil.toGray(Image)` instead.
icy.image.IcyBufferedImageUtil.toIcyBufferedImage(BufferedImage) Use `IcyBufferedImage.createFrom(BufferedImage)` instead.
icy.image.IcyBufferedImageUtil.toIcyBufferedImage(List) Use `IcyBufferedImage.createFrom(List)` instead.
icy.type.collection.array.Array2DUtil.toIntArray(int[][]) Use `Array2DUtil.toIntArray1D(int[][])` instead
icy.type.TypeUtil.toLongString(int) use `DataType` method instead
icy.type.TypeUtil.toString(int) use `DataType` method instead
plugins.kernel.roi.roi3d.ROI3DArea.translate(double, double) Use `ROI3DStack.translate(double, double, double)` instead.
icy.image.IcyBufferedImage.translate(int, int) Use `IcyBufferedImageUtil.translate(IcyBufferedImage, int, int)` instead.
icy.image.IcyBufferedImage.translate(int, int, int) Use `IcyBufferedImageUtil.translate(IcyBufferedImage, int, int, int)` instead.
icy.roi.BooleanMask2D.union(BooleanMask2D) Use `BooleanMask2D.add(BooleanMask2D)` instead.
icy.roi.BooleanMask2D.union(Rectangle, boolean[]) Use `BooleanMask2D.add(BooleanMask2D)` instead.
plugins.kernel.canvas.VtkCanvas.unlock() Use `getVtkPanel().unlock()` instead.
icy.vtk.VtkJoglPanel.UnLock() Use `VtkJoglPanel.unlock()` instead
icy.gui.main.MainInterfaceGui.unRegisterExternalFrame(JFrame)
icy.gui.main.MainInterfaceBatch.unRegisterExternalFrame(JFrame)
icy.gui.main.MainInterface.unRegisterExternalFrame(JFrame)
icy.sequence.Sequence.updateComponentsBounds() Use `Sequence.updateChannelsBounds(boolean)` instead.
icy.image.IcyBufferedImage.updateComponentsBounds(boolean) Use `IcyBufferedImage.updateChannelsBounds()` instead.
icy.sequence.Sequence.updateComponentsBounds(boolean) Use `Sequence.updateChannelsBounds(boolean)` instead.
icy.image.IcyBufferedImage.updateComponentsBounds(boolean, boolean) Use `IcyBufferedImage.updateChannelsBounds()` instead.
icy.sequence.Sequence.updateComponentsBounds(boolean, boolean) Use `Sequence.updateChannelsBounds(boolean)` instead.
icy.vtk.VtkJoglPanel.UpdateLight() Use `VtkJoglPanel.updateLight()` instead
plugins.kernel.roi.roi2d.ROI2DArea.updateMask(int, int, boolean) Use `ROI2DArea.setPoint(int, int, boolean)` instead.
icy.plugin.PluginRepositoryLoader.waitBasicLoaded() use `PluginRepositoryLoader.waitLoaded()` instead.
icy.plugin.PluginRepositoryLoader.waitDescriptorsLoaded() descriptor loading is now done per descriptor when needed
icy.system.thread.BackgroundProcessor.waitForIdleSlots()
icy.roi.BooleanMask2D.xor(BooleanMask2D) Use `BooleanMask2D.exclusiveUnion(BooleanMask2D)` instead
icy.roi.BooleanMask2D.xor(Rectangle, boolean[]) Use `BooleanMask2D.exclusiveUnion(Rectangle, boolean[])` instead
icy.util.ShapeUtil.xor(Shape, Shape) Use `ShapeUtil.exclusiveUnion(Shape, Shape)` instead.

Deprecated Constructors
Constructor and Description
icy.painter.AbstractPainter() Uses the `Overlay` class instead.
icy.painter.AbstractPainter(Sequence) Uses the `Overlay` class instead.
icy.gui.dialog.ActionDialog(Frame, String) Use `ActionDialog.ActionDialog(String, JComponent, Frame)` instead
icy.painter.Anchor2D(Point2D) Use `Anchor2D.Anchor2D(double, double)` instead.
icy.painter.Anchor2D(Point2D, Color) Use `Anchor2D.Anchor2D(double, double, Color)` instead.
icy.painter.Anchor2D(Point2D, Color, Color) Use `Anchor2D.Anchor2D(double, double, Color, Color)` instead.
icy.painter.Anchor2D(Point2D, int) Use `Anchor2D.Anchor2D(double, double, int)` instead.
icy.painter.Anchor2D(Point2D, int, Color) Use `Anchor2D.Anchor2D(double, double, int, Color)` instead.
icy.painter.Anchor2D(Point2D, int, Color, Color) Use `Anchor2D.Anchor2D(double, double, int, Color, Color)` instead.
icy.painter.Anchor2D(Sequence) Use `Anchor2D.Anchor2D()` instead.
icy.painter.Anchor2D(Sequence, double, double) Use `Anchor2D.Anchor2D(double, double)` instead.
icy.painter.Anchor2D(Sequence, double, double, Color) Use `Anchor2D.Anchor2D(double, double, Color, Color)` instead.
icy.painter.Anchor2D(Sequence, double, double, Color, Color) Use `Anchor2D.Anchor2D(double, double, int)` instead.
icy.painter.Anchor2D(Sequence, double, double, int) Use `Anchor2D.Anchor2D(double, double, int)` instead.
icy.painter.Anchor2D(Sequence, double, double, int, Color, Color) Use `Anchor2D.Anchor2D(double, double, int, Color, Color)` instead.
icy.painter.Anchor2D(Sequence, Point2D) Use `Anchor2D.Anchor2D(double, double)` instead.
icy.painter.Anchor2D(Sequence, Point2D, Color) Use `Anchor2D.Anchor2D(double, double, Color)` instead.
icy.painter.Anchor2D(Sequence, Point2D, Color, Color) Use `Anchor2D.Anchor2D(double, double, Color, Color)` instead.
icy.painter.Anchor2D(Sequence, Point2D, int) Use `Anchor2D.Anchor2D(double, double, int)` instead.
icy.painter.Anchor2D(Sequence, Point2D, int, Color) Use `Anchor2D.Anchor2D(Point2D, int, Color)` instead.
icy.painter.Anchor2D(Sequence, Point2D, int, Color, Color) Use `Anchor2D.Anchor2D(double, double, int, Color, Color)` instead.
icy.gui.component.renderer.ColormapComboBoxRenderer(JComboBox, int, int) Use `ColormapComboBoxRenderer.ColormapComboBoxRenderer(JComboBox)` instead
icy.action.IcyAbstractAction(String, String) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon)` instead.
icy.common.IcyAbstractAction(String, String) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon)` instead.
icy.action.IcyAbstractAction(String, String, String) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon, String)` instead.
icy.common.IcyAbstractAction(String, String, String) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon, String)` instead.
icy.action.IcyAbstractAction(String, String, String, int) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon, String, int)` instead.
icy.common.IcyAbstractAction(String, String, String, int) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon, String, int)` instead.
icy.action.IcyAbstractAction(String, String, String, int, int) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon, String, int, int)` instead.
icy.common.IcyAbstractAction(String, String, String, int, int) Use `IcyAbstractAction.IcyAbstractAction(String, IcyIcon, String, int, int)` instead.
icy.image.IcyBufferedImage(int, int, int, int) use `IcyBufferedImage.IcyBufferedImage(int, int, int, DataType)` instead
icy.image.IcyBufferedImage(int, int, int, int, boolean) use `IcyBufferedImage.IcyBufferedImage(int, int, int, DataType)` instead
icy.gui.component.button.IcyButton(IcyAbstractAction) User `IcyButton.IcyButton(IcyAbstractAction)` instead.
icy.gui.component.button.IcyButton(Image) Use `IcyButton.IcyButton(IcyIcon)` instead.
icy.gui.component.button.IcyButton(Image, int) Use `IcyButton.IcyButton(IcyIcon)` instead.
icy.gui.component.button.IcyButton(String, Image) Use `IcyButton.IcyButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyButton(String, Image, int) Use `IcyButton.IcyButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyButton(String, String) Use `IcyButton.IcyButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyButton(String, String, int) Use `IcyButton.IcyButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyCommandButton(IcyAbstractAction) User `IcyCommandButton.IcyCommandButton(IcyAbstractAction)` instead.
icy.gui.component.button.IcyCommandButton(String, Image) Use `IcyCommandButton.IcyCommandButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyCommandButton(String, String) Use `IcyCommandButton.IcyCommandButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyCommandMenuButton(IcyAbstractAction) User `IcyCommandMenuButton.IcyCommandMenuButton(IcyAbstractAction)` instead.
icy.gui.component.button.IcyCommandMenuButton(String, String) Use `IcyCommandMenuButton.IcyCommandMenuButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyCommandToggleButton(IcyAbstractAction) User `IcyCommandToggleButton.IcyCommandToggleButton(IcyAbstractAction)` instead.
icy.gui.component.button.IcyCommandToggleButton(String, String) Use `IcyCommandToggleButton.IcyCommandToggleButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyCommandToggleMenuButton(IcyAbstractAction) User `IcyCommandToggleMenuButton.IcyCommandToggleMenuButton(IcyAbstractAction)` instead.
icy.gui.component.button.IcyCommandToggleMenuButton(String, String) Use `IcyCommandToggleMenuButton.IcyCommandToggleMenuButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(IcyAbstractAction) User `IcyToggleButton.IcyToggleButton(IcyAbstractAction)` instead.
icy.gui.component.button.IcyToggleButton(Image) Use `IcyToggleButton.IcyToggleButton(IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(Image, int) Use `IcyToggleButton.IcyToggleButton(IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(String) Use `IcyToggleButton.IcyToggleButton(IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(String, Image) Use `IcyToggleButton.IcyToggleButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(String, Image, int) Use `IcyToggleButton.IcyToggleButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(String, int) Use `IcyToggleButton.IcyToggleButton(IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(String, String) Use `IcyToggleButton.IcyToggleButton(String, IcyIcon)` instead.
icy.gui.component.button.IcyToggleButton(String, String, int) Use `IcyToggleButton.IcyToggleButton(String, IcyIcon)` instead.
icy.system.thread.IdProcessor(int, int) uses default constructor instead
icy.gui.component.ImageComponent(Image, Dimension) Use `ImageComponent.ImageComponent(Image)` instead
icy.gui.component.ImageComponent(Image, int, int) Use `ImageComponent.ImageComponent(Image)` instead
icy.image.ImageDataIterator(IcyBufferedImage) Use `ImageDataIterator.ImageDataIterator(IcyBufferedImage, int)` instead. The `ImageDataIterator` iterate only on single channel data.
icy.image.ImageDataIterator(IcyBufferedImage, BooleanMask2D) Use `ImageDataIterator.ImageDataIterator(IcyBufferedImage, BooleanMask2D, int)` instead
icy.image.ImageDataIterator(IcyBufferedImage, int, int, int, int, int) Use `ImageDataIterator.ImageDataIterator(IcyBufferedImage, Rectangle, int)` instead.
icy.image.ImageDataIterator(IcyBufferedImage, int, int, int, int, int, int) Use `ImageDataIterator.ImageDataIterator(IcyBufferedImage, Rectangle, int)` instead.
icy.image.ImageDataIterator(IcyBufferedImage, ROI) Use `ImageDataIterator.ImageDataIterator(IcyBufferedImage, BooleanMask2D, int)` instead. You can use the `ROI.getBooleanMask2D(int, int, int, boolean)` method to retrieve the boolean mask from the ROI.
icy.gui.dialog.ImageSaverDialog(Sequence) Use `LoaderDialog.AllImagesFileFilter` instead.
icy.gui.dialog.ImageSaverDialog(Sequence, boolean) Use `LoaderDialog.AllImagesFileFilter` instead.
icy.gui.dialog.ImageSaverDialog(Sequence, int, int) Use `LoaderDialog.AllImagesFileFilter` instead.
icy.gui.dialog.ImageSaverDialog(Sequence, int, int, boolean) Use `LoaderDialog.AllImagesFileFilter` instead.
icy.canvas.Layer(Painter) Use `Layer.Layer(Overlay)` instead.
icy.canvas.Layer(Painter, String) Use `Layer.Layer(Overlay)` instead.
icy.file.Loader.FilePosition(String, int, int, int) Use `#FilePosition(String, String, int, int, int, int)` instead.
icy.painter.PathAnchor2D(double, double, int, Color, Color) Uses `PathAnchor2D.PathAnchor2D(double, double, double, double, double, double, int, Color, Color)` instead.
icy.painter.PathAnchor2D(Sequence, double, double, double, double, double, double, int, Color, Color) Uses `PathAnchor2D.PathAnchor2D(double, double, double, double, double, double, int, Color, Color)` instead.
icy.gui.component.PopupPanel() Use `PopupPanel.PopupPanel(String)` instead.
icy.gui.component.PopupPanel(String, int) Use `PopupPanel.PopupPanel(String, boolean)` instead
icy.gui.component.PopupPanel(String, int, boolean) Use `PopupPanel.PopupPanel(String, boolean)` instead
plugins.kernel.roi.roi2d.ROI2DArea(Point2D, boolean) Use `ROI2DArea.ROI2DArea(Point5D)` instead
icy.roi.ROI2DArea(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DEllipse(Point2D, boolean)
icy.roi.ROI2DEllipse(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DEllipse(Point2D, Point2D, boolean)
icy.roi.ROI2DEllipse(Point2D, Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DEllipse(Rectangle2D, boolean)
icy.roi.ROI2DEllipse(Rectangle2D, boolean)
plugins.kernel.roi.roi2d.ROI2DLine(Point2D, boolean)
icy.roi.ROI2DLine(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DPath(Point2D, boolean)
icy.roi.ROI2DPath(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DPoint(Point2D, boolean)
icy.roi.ROI2DPoint(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DPolygon(Point2D, boolean)
icy.roi.ROI2DPolygon(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DPolygon(Polygon) Better to use `ROI2DPolygon.ROI2DPolygon(Polygon2D)` instead to have double point precision
plugins.kernel.roi.roi2d.ROI2DPolyLine(Point2D, boolean)
icy.roi.ROI2DPolyLine(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DRectangle(Point2D, boolean)
icy.roi.ROI2DRectangle(Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DRectangle(Point2D, Point2D, boolean)
icy.roi.ROI2DRectangle(Point2D, Point2D, boolean)
plugins.kernel.roi.roi2d.ROI2DRectangle(Rectangle2D, boolean)
icy.roi.ROI2DRectangle(Rectangle2D, boolean)
plugins.kernel.roi.roi3d.ROI3DPoint(Point3D, boolean)
icy.roi.ROIEvent(ROI, ROIEvent.ROIEventType, ROIEvent.ROIPointEventType, Object) Use `ROIEvent.ROIEvent(ROI, ROIEventType)` constructor instead
icy.gui.dialog.SaverDialog(Sequence, int, int) Use `SaverDialog.SaverDialog(Sequence)` instead
icy.gui.dialog.SaverDialog(Sequence, int, int, boolean) Use `SaverDialog.SaverDialog(Sequence, boolean)` instead
icy.sequence.Sequence(OMEXMLMetadataImpl) Use `Sequence.Sequence(OMEXMLMetadata)` instead.
icy.sequence.Sequence(OMEXMLMetadataImpl, String) Use `Sequence.Sequence(OMEXMLMetadata, String)` instead.
icy.gui.component.sequence.SequenceChooser(int) Use `SequenceChooser.SequenceChooser(boolean, String, int)` instead.
icy.gui.component.sequence.SequenceChooser(int, boolean) Use `SequenceChooser.SequenceChooser(boolean, String, int)` instead.
icy.gui.component.sequence.SequenceChooser(int, boolean, boolean) Use `SequenceChooser.SequenceChooser(boolean, String, int)` instead.
icy.gui.component.sequence.SequenceChooser(int, boolean, boolean, String) Use `SequenceChooser.SequenceChooser(boolean, String, int)` instead.
icy.sequence.SequenceDataIterator(Sequence, int, int, int, int, int, int, int) Use `SequenceDataIterator.SequenceDataIterator(Sequence, Rectangle, int, int, int)` instead
icy.sequence.SequenceDataIterator(Sequence, int, int, int, int, int, int, int, int, int, int) Use `SequenceDataIterator.SequenceDataIterator(Sequence, Rectangle5D.Integer)` instead
icy.gui.dialog.SeriesSelectionDialog(IFormatReader) Use `SeriesSelectionDialog.SeriesSelectionDialog(SequenceFileImporter, String)` instead.
icy.gui.dialog.SeriesSelectionDialog(SequenceFileImporter, String, OMEXMLMetadataImpl) Use `SeriesSelectionDialog.SeriesSelectionDialog(SequenceFileImporter, String, OMEXMLMetadata)` instead.
icy.system.thread.SingleIdProcessor() Use `IdProcessor` instead
icy.system.thread.SingleInstanceProcessor() Use `InstanceProcessor` instead

Deprecated Enum Constants
Enum Constant and Description
icy.roi.ROIEvent.ROIEventType.NAME_CHANGED
icy.roi.ROIEvent.ROIEventType.PAINTER_CHANGED
icy.sequence.SequenceEvent.SequenceEventSourceType.SEQUENCE_PAINTER
icy.type.DataType.UNDEFINED Use `null` instance instead

Deprecated API

Contents