plugins.kernel.roi.roi3d

Class ROI3DPoint

java.lang.Object

icy.roi.ROI

icy.roi.ROI3D

plugins.kernel.roi.roi3d.ROI3DShape

plugins.kernel.roi.roi3d.ROI3DPoint

All Implemented Interfaces:

ChangeListener, XMLPersistent, Shape3D

public class ROI3DPoint
extends ROI3DShape

ROI 3D Point class.

Author:

Stephane Dallongeville

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	ROI3DPoint.ROI3DPointPainter

Nested classes/interfaces inherited from class plugins.kernel.roi.roi3d.ROI3DShape

ROI3DShape.ROI3DShapePainter

Nested classes/interfaces inherited from class icy.roi.ROI3D

ROI3D.ROI3DPainter

Nested classes/interfaces inherited from class icy.roi.ROI

ROI.ROIGroupId, ROI.ROIIdComparator, ROI.ROINameComparator, ROI.ROIPainter

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ID_POSITION

Fields inherited from class plugins.kernel.roi.roi3d.ROI3DShape

ID_POINT, ID_POINTS

Fields inherited from class icy.roi.ROI3D

ID_C, ID_T

Fields inherited from class icy.roi.ROI

DEFAULT_COLOR, DEFAULT_NORMAL_COLOR, DEFAULT_OPACITY, DEFAULT_STROKE, defaultColor, defaultOpacity, defaultShowName, defaultStroke, ID_CLASSNAME, ID_COLOR, ID_GROUPID, ID_ID, ID_NAME, ID_OPACITY, ID_PROPERTIES, ID_READONLY, ID_ROI, ID_SELECTED, ID_SHOWNAME, ID_STROKE, idComparator, nameComparator, PROPERTY_COLOR, PROPERTY_CREATING, PROPERTY_GROUPID, PROPERTY_ICON, PROPERTY_NAME, PROPERTY_OPACITY, PROPERTY_READONLY, PROPERTY_SHOWNAME, PROPERTY_STROKE, ROI_CHANGED_ALL, ROI_CHANGED_POSITION

Constructor Summary

Constructors

Constructor and Description
ROI3DPoint()
ROI3DPoint(double x, double y, double z)
ROI3DPoint(Point3D position)
ROI3DPoint(Point3D pt, boolean cm) Deprecated.
ROI3DPoint(Point5D pt) Generic constructor for interactive mode

Method Summary

Methods

Modifier and Type	Method and Description
boolean	canAddPoint() Return true if this ROI support adding new point
double	computeNumberOfContourPoints() Compute and returns the number of point (pixel) composing the ROI contour.
double	computeNumberOfPoints() Compute and returns the number of point (pixel) contained in the ROI.
boolean	contains(ROI roi) Tests if the ROI entirely contains the specified ROI.
void	controlPointOverlayChanged(OverlayEvent event) Called when anchor overlay changed
boolean[]	getBooleanMask2D(int x, int y, int width, int height, int z, boolean inclusive) Get the boolean bitmap mask for the specified rectangular area of the roi and for the specified Z position.
java.lang.String	getDefaultName()
Line3D	getLine()
Point3D	getPoint()
boolean	intersects(ROI r) Tests if the current ROI intersects the specified ROI.
boolean	loadFromXML(org.w3c.dom.Node node) LOAD
void	onChanged(CollapsibleEvent object) roi changed
boolean	saveToXML(org.w3c.dom.Node node) SAVE

Methods inherited from class plugins.kernel.roi.roi3d.ROI3DShape

addNewPoint, addPoint, canRemovePoint, canTranslate, computeBounds3D, computeSurfaceArea, contains, contains, contains, contains, controlPointPositionChanged, getControlPoints, getLength, getPoints, getShape, hasSelectedPoint, intersects, intersects, isOverEdge, removePoint, removeSelectedPoint, translate, unselectAllPoints

Methods inherited from class icy.roi.ROI3D

canSetBounds, canSetPosition, computeBounds5D, contains, contains, getBooleanMask, getBooleanMask2D, getBooleanMask2D, getBooleanMask2D, getBooleanMask2D, getBooleanMask3D, getBounds, getBounds3D, getC, getDimension, getPosition, getPosition3D, getROI3DList, getROI3DList, getSurfaceArea, getSurfaceArea, getT, getVolume, intersects, isActiveFor, isActiveFor, isOverEdge, isOverEdge, isOverEdge, setBounds3D, setBounds5D, setC, setPosition3D, setPosition5D, setT

Methods inherited from class icy.roi.ROI

add, addListener, attachTo, beginUpdate, canvasToImageDeltaX, canvasToImageDeltaY, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaY, canvasToImageLogDeltaY, canvasToImageLogDeltaY, canvasToImageLogDeltaY, contains, contains, copyFrom, create, create, create, create, createFromXML, delete, delete, detachFrom, detachFromAll, detachFromAll, endUpdate, exclusiveAdd, focusChanged, getAdjustedStroke, getAdjustedStroke, getBooleanMask2D, getBounds5D, getClassName, getColor, getCopy, getDefaultColor, getDefaultOpacity, getDefaultShowName, getDefaultStroke, getDisplayColor, getExclusiveUnion, getFirstSequence, getFocusedColor, getGroupId, getIcon, getId, getIntersection, getName, getNameSuffix, getNumberOfContourPoints, getNumberOfPoints, getOpacity, getOverlay, getPainter, getPerimeter, getPosition5D, getProperties, getProperty, getPropertyValue, getROICount, getROIList, getROIList, getROIList, getROIsFromXML, getSelectedColor, getSequences, getShowName, getSimpleClassName, getStroke, getSubROI, getSubtraction, getUnion, internalFocus, internalSelect, internalUnfocus, internalUnselect, intersect, intersects, isAttached, isCreating, isDefaultName, isEditable, isEmpty, isFocused, isReadOnly, isSelected, isUpdating, loadFromXML, loadROIsFromXML, merge, mergeWith, nameChanged, painterChanged, propertyChanged, remove, remove, removeListener, roiChanged, roiChanged, roiChanged, saveROIsToXML, selectionChanged, setColor, setCreating, setDefaultColor, setDefaultOpacity, setDefaultShowName, setDefaultStroke, setEditable, setFocused, setGroupId, setIcon, setMousePos, setName, setOpacity, setProperty, setPropertyValue, setReadOnly, setROIsFromXML, setSelected, setSelected, setSelectedColor, setShowName, setStroke, subtract

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface icy.type.geom.Shape3D

getBounds

Field Detail

ID_POSITION

public static final java.lang.String ID_POSITION

See Also:

Constant Field Values

Constructor Detail

ROI3DPoint

@Deprecated
public ROI3DPoint(Point3D pt,
                     boolean cm)

Deprecated.

ROI3DPoint

public ROI3DPoint(Point3D position)

ROI3DPoint

public ROI3DPoint(Point5D pt)

Generic constructor for interactive mode

ROI3DPoint

public ROI3DPoint(double x,
          double y,
          double z)

ROI3DPoint

public ROI3DPoint()

Method Detail

getDefaultName

public java.lang.String getDefaultName()

Overrides:

getDefaultName in class ROI3DShape

Returns:

the default name for this ROI class

getLine

public Line3D getLine()

getPoint

public Point3D getPoint()

controlPointOverlayChanged

public void controlPointOverlayChanged(OverlayEvent event)

Called when anchor overlay changed

Overrides:

controlPointOverlayChanged in class ROI3DShape

contains

public boolean contains(ROI roi)

Description copied from class: ROI

Tests if the ROI entirely contains the specified ROI. WARNING: this method may be "pixel accurate" only depending the internal implementation.

Overrides:

contains in class ROI3D

Returns:

true if the current ROI entirely contains the specified ROI; false otherwise.

intersects

public boolean intersects(ROI r)

Description copied from class: ROI

Tests if the current ROI intersects the specified ROI.
Note that this method may be "pixel accurate" only depending the internal implementation.

Overrides:

intersects in class ROI3D

Returns:

true if ROI intersect, false otherwise.

getBooleanMask2D

public boolean[] getBooleanMask2D(int x,
                         int y,
                         int width,
                         int height,
                         int z,
                         boolean inclusive)

Description copied from class: ROI3D

Get the boolean bitmap mask for the specified rectangular area of the roi and for the specified Z position.
if the pixel (x,y) is contained in the roi Z position then result[(y * width) + x] = true
if the pixel (x,y) is not contained in the roi Z position then result[(y * width) + x] = false

Overrides:

getBooleanMask2D in class ROI3D

Parameters:

x - the X coordinate of the upper-left corner of the specified rectangular area

y - the Y coordinate of the upper-left corner of the specified rectangular area

width - the width of the specified rectangular area

height - the height of the specified rectangular area

z - Z position we want to retrieve the boolean mask

inclusive - If true then all partially contained (intersected) pixels are included in the mask.

Returns:

the boolean bitmap mask

onChanged

public void onChanged(CollapsibleEvent object)

roi changed

Specified by:

onChanged in interface ChangeListener

Overrides:

onChanged in class ROI3DShape

canAddPoint

public boolean canAddPoint()

Description copied from class: ROI3DShape

Return true if this ROI support adding new point

Overrides:

canAddPoint in class ROI3DShape

computeNumberOfContourPoints

public double computeNumberOfContourPoints()

Description copied from class: ROI

Compute and returns the number of point (pixel) composing the ROI contour.

Overrides:

computeNumberOfContourPoints in class ROI3DShape

computeNumberOfPoints

public double computeNumberOfPoints()

Description copied from class: ROI

Compute and returns the number of point (pixel) contained in the ROI.

Overrides:

computeNumberOfPoints in class ROI3DShape

loadFromXML

public boolean loadFromXML(org.w3c.dom.Node node)

Description copied from interface: XMLPersistent

LOAD

Specified by:

loadFromXML in interface XMLPersistent

Overrides:

loadFromXML in class ROI3DShape

saveToXML

public boolean saveToXML(org.w3c.dom.Node node)

Description copied from interface: XMLPersistent

SAVE

Specified by:

saveToXML in interface XMLPersistent

Overrides:

saveToXML in class ROI3D