plugins.kernel.roi.roi2d

Class ROI2DPoint

java.lang.Object

icy.roi.ROI

icy.roi.ROI2D

plugins.kernel.roi.roi2d.ROI2DShape

plugins.kernel.roi.roi2d.ROI2DPoint

All Implemented Interfaces:

ChangeListener, XMLPersistent, java.awt.Shape

Direct Known Subclasses:

ROI2DPoint

public class ROI2DPoint
extends ROI2DShape

ROI 2D Point class.
Define a single point ROI

Author:

Stephane Dallongeville

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	ROI2DPoint.ROI2DPointPainter

Nested classes/interfaces inherited from class plugins.kernel.roi.roi2d.ROI2DShape

ROI2DShape.ROI2DShapePainter

Nested classes/interfaces inherited from class icy.roi.ROI2D

ROI2D.ROI2DPainter

Nested classes/interfaces inherited from class icy.roi.ROI

ROI.ROIGroupId, ROI.ROIIdComparator, ROI.ROINameComparator, ROI.ROIPainter

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ID_POSITION

Fields inherited from class icy.roi.ROI2D

ID_C, ID_T, ID_Z

Fields inherited from class icy.roi.ROI

DEFAULT_COLOR, DEFAULT_NORMAL_COLOR, DEFAULT_OPACITY, DEFAULT_STROKE, defaultColor, defaultOpacity, defaultShowName, defaultStroke, ID_CLASSNAME, ID_COLOR, ID_GROUPID, ID_ID, ID_NAME, ID_OPACITY, ID_PROPERTIES, ID_READONLY, ID_ROI, ID_SELECTED, ID_SHOWNAME, ID_STROKE, idComparator, nameComparator, PROPERTY_COLOR, PROPERTY_CREATING, PROPERTY_GROUPID, PROPERTY_ICON, PROPERTY_NAME, PROPERTY_OPACITY, PROPERTY_READONLY, PROPERTY_SHOWNAME, PROPERTY_STROKE, ROI_CHANGED_ALL, ROI_CHANGED_POSITION

Constructor Summary

Constructors

Constructor and Description
ROI2DPoint()
ROI2DPoint(double x, double y)
ROI2DPoint(java.awt.geom.Point2D position)
ROI2DPoint(java.awt.geom.Point2D pt, boolean cm) Deprecated.
ROI2DPoint(Point5D pt) Generic constructor for interactive mode

Method Summary

Methods

Modifier and Type	Method and Description
boolean	canAddPoint() Return true if this ROI support adding new point
double	computeNumberOfContourPoints() Compute and returns the number of point (pixel) composing the ROI contour.
double	computeNumberOfPoints() Generic implementation for ROI2D using the BooleanMask object so the result is just an approximation.
boolean	contains(double x, double y) Tests if the specified coordinates are inside the ROI.
boolean	contains(double x, double y, double w, double h) Tests if the ROI entirely contains the specified rectangular area.
boolean	contains(java.awt.geom.Point2D p) Tests if a specified Point2D is inside the ROI.
boolean	contains(java.awt.geom.Rectangle2D r) Tests if the interior of the ROI entirely contains the specified Rectangle2D.
boolean	contains(ROI roi) Tests if the ROI entirely contains the specified ROI.
void	controlPointOverlayChanged(OverlayEvent event) Called when anchor overlay changed
java.lang.String	getDefaultName()
java.awt.geom.Line2D	getLine()
java.awt.geom.Point2D	getPoint()
java.awt.geom.Rectangle2D	getRectangle() Deprecated. Use getLine() instead.
boolean	intersects(ROI r) Tests if the current ROI intersects the specified ROI.
boolean	loadFromXML(org.w3c.dom.Node node) LOAD
void	onChanged(CollapsibleEvent object) roi changed
boolean	saveToXML(org.w3c.dom.Node node) SAVE

Methods inherited from class plugins.kernel.roi.roi2d.ROI2DShape

addNewPoint, addNewPoint, addPoint, addPoint, addPointAt, canRemovePoint, canTranslate, computeBounds2D, controlPointPositionChanged, getBooleanMask, getControlPoints, getExclusiveUnion, getIntersection, getLength, getPathIterator, getPathIterator, getPoints, getShape, getSubtraction, getUnion, hasSelectedPoint, intersects, intersects, isOverEdge, painterChanged, removePoint, removePointAt, removeSelectedPoint, translate, unselectAllPoints

Methods inherited from class icy.roi.ROI2D

canSetBounds, canSetPosition, computeBounds5D, computePerimeter, contains, contains, getArea, getAsBooleanMask, getAsBooleanMask, getAsBooleanMask, getAsBooleanMask, getAsBooleanMask, getAsBooleanMask, getBooleanMask, getBooleanMask, getBooleanMask, getBooleanMask, getBooleanMask, getBooleanMask2D, getBooleanMask2D, getBounds, getBounds2D, getC, getDimension, getPerimeter, getPerimeter, getPosition, getPosition2D, getROI2DList, getROI2DList, getROI2DList, getSubROI, getT, getZ, intersects, isActiveFor, isActiveFor, isOver, isOver, isOverEdge, isOverEdge, isOverEdge, merge, setBounds2D, setBounds5D, setC, setPosition, setPosition2D, setPosition5D, setT, setZ, substract, subtract

Methods inherited from class icy.roi.ROI

add, addListener, attachTo, beginUpdate, canvasToImageDeltaX, canvasToImageDeltaY, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaY, canvasToImageLogDeltaY, canvasToImageLogDeltaY, canvasToImageLogDeltaY, contains, contains, copyFrom, create, create, create, create, createFromXML, delete, delete, detachFrom, detachFromAll, detachFromAll, endUpdate, exclusiveAdd, focusChanged, getAdjustedStroke, getAdjustedStroke, getBooleanMask2D, getBounds5D, getClassName, getColor, getCopy, getDefaultColor, getDefaultOpacity, getDefaultShowName, getDefaultStroke, getDisplayColor, getFirstSequence, getFocusedColor, getGroupId, getIcon, getId, getName, getNameSuffix, getNumberOfContourPoints, getNumberOfPoints, getOpacity, getOverlay, getPainter, getPosition5D, getProperties, getProperty, getPropertyValue, getROICount, getROIList, getROIList, getROIList, getROIsFromXML, getSelectedColor, getSequences, getShowName, getSimpleClassName, getStroke, getVolume, internalFocus, internalSelect, internalUnfocus, internalUnselect, intersect, intersects, isAttached, isCreating, isDefaultName, isEditable, isEmpty, isFocused, isReadOnly, isSelected, isUpdating, loadFromXML, loadROIsFromXML, merge, mergeWith, nameChanged, painterChanged, propertyChanged, remove, remove, removeListener, roiChanged, roiChanged, roiChanged, saveROIsToXML, selectionChanged, setColor, setCreating, setDefaultColor, setDefaultOpacity, setDefaultShowName, setDefaultStroke, setEditable, setFocused, setGroupId, setIcon, setMousePos, setName, setOpacity, setProperty, setPropertyValue, setReadOnly, setROIsFromXML, setSelected, setSelected, setSelectedColor, setShowName, setStroke, subtract

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.awt.Shape

getBounds, getBounds2D

Field Detail

ID_POSITION

public static final java.lang.String ID_POSITION

See Also:

Constant Field Values

Constructor Detail

ROI2DPoint

@Deprecated
public ROI2DPoint(java.awt.geom.Point2D pt,
                     boolean cm)

Deprecated.

ROI2DPoint

public ROI2DPoint(java.awt.geom.Point2D position)

ROI2DPoint

public ROI2DPoint(Point5D pt)

Generic constructor for interactive mode

ROI2DPoint

public ROI2DPoint(double x,
          double y)

ROI2DPoint

public ROI2DPoint()

Method Detail

getDefaultName

public java.lang.String getDefaultName()

Overrides:

getDefaultName in class ROI2DShape

Returns:

the default name for this ROI class

getRectangle

@Deprecated
public java.awt.geom.Rectangle2D getRectangle()

Deprecated. Use getLine() instead.

getLine

public java.awt.geom.Line2D getLine()

getPoint

public java.awt.geom.Point2D getPoint()

controlPointOverlayChanged

public void controlPointOverlayChanged(OverlayEvent event)

Called when anchor overlay changed

Overrides:

controlPointOverlayChanged in class ROI2DShape

contains

public boolean contains(double x,
               double y)

Description copied from class: ROI2D

Tests if the specified coordinates are inside the ROI.

Specified by:

contains in interface java.awt.Shape

Overrides:

contains in class ROI2DShape

Parameters:

x - the specified X coordinate to be tested

y - the specified Y coordinate to be tested

Returns:

true if the specified coordinates are inside the ROI boundary; false otherwise.

contains

public boolean contains(java.awt.geom.Point2D p)

Description copied from class: ROI2D

Tests if a specified Point2D is inside the ROI.

Specified by:

contains in interface java.awt.Shape

Overrides:

contains in class ROI2DShape

Parameters:

p - the specified Point2D to be tested

Returns:

true if the specified Point2D is inside the boundary of the ROI; false otherwise.

contains

public boolean contains(double x,
               double y,
               double w,
               double h)

Description copied from class: ROI2D

Tests if the ROI entirely contains the specified rectangular area. All coordinates that lie inside the rectangular area must lie within the ROI for the entire rectangular area to be considered contained within the ROI.

The ROI.contains() method allows a ROI implementation to conservatively return false when:

• the intersect method returns true and
• the calculations to determine whether or not the ROI entirely contains the rectangular area are prohibitively expensive.

This means that for some ROIs this method might return false even though the ROI contains the rectangular area.

Specified by:

contains in interface java.awt.Shape

Overrides:

contains in class ROI2DShape

Parameters:

x - the X coordinate of the upper-left corner of the specified rectangular area

y - the Y coordinate of the upper-left corner of the specified rectangular area

w - the width of the specified rectangular area

h - the height of the specified rectangular area

Returns:

true if the interior of the ROI entirely contains the specified rectangular area; false otherwise or, if the ROI contains the rectangular area and the intersects method returns true and the containment calculations would be too expensive to perform.

contains

public boolean contains(java.awt.geom.Rectangle2D r)

Description copied from class: ROI2D

Tests if the interior of the ROI entirely contains the specified Rectangle2D. The ROI.contains() method allows a implementation to conservatively return false when:

• the intersect method returns true and
• the calculations to determine whether or not the ROI entirely contains the Rectangle2D are prohibitively expensive.

This means that for some ROIs this method might return false even though the ROI contains the Rectangle2D.

Specified by:

contains in interface java.awt.Shape

Overrides:

contains in class ROI2DShape

Parameters:

r - The specified Rectangle2D

Returns:

true if the interior of the ROI entirely contains the Rectangle2D; false otherwise or, if the ROI contains the Rectangle2D and the intersects method returns true and the containment calculations would be too expensive to perform.

See Also:

ROI2D.contains(double, double, double, double)

contains

public boolean contains(ROI roi)

Description copied from class: ROI

Tests if the ROI entirely contains the specified ROI. WARNING: this method may be "pixel accurate" only depending the internal implementation.

Overrides:

contains in class ROI2D

Returns:

true if the current ROI entirely contains the specified ROI; false otherwise.

intersects

public boolean intersects(ROI r)

Description copied from class: ROI

Tests if the current ROI intersects the specified ROI.
Note that this method may be "pixel accurate" only depending the internal implementation.

Overrides:

intersects in class ROI2D

Returns:

true if ROI intersect, false otherwise.

onChanged

public void onChanged(CollapsibleEvent object)

roi changed

Specified by:

onChanged in interface ChangeListener

Overrides:

onChanged in class ROI2DShape

canAddPoint

public boolean canAddPoint()

Description copied from class: ROI2DShape

Return true if this ROI support adding new point

Overrides:

canAddPoint in class ROI2DShape

computeNumberOfContourPoints

public double computeNumberOfContourPoints()

Description copied from class: ROI

Compute and returns the number of point (pixel) composing the ROI contour.

Overrides:

computeNumberOfContourPoints in class ROI2DShape

computeNumberOfPoints

public double computeNumberOfPoints()

Description copied from class: ROI2D

Generic implementation for ROI2D using the BooleanMask object so the result is just an approximation. This method should be overridden whenever possible to provide more optimal approximations.

Overrides:

computeNumberOfPoints in class ROI2D

loadFromXML

public boolean loadFromXML(org.w3c.dom.Node node)

Description copied from interface: XMLPersistent

LOAD

Specified by:

loadFromXML in interface XMLPersistent

Overrides:

loadFromXML in class ROI2DShape

saveToXML

public boolean saveToXML(org.w3c.dom.Node node)

Description copied from interface: XMLPersistent

SAVE

Specified by:

saveToXML in interface XMLPersistent

Overrides:

saveToXML in class ROI2D