| Package | Description |
|---|---|
| icy.roi |
Contains all ROI (Region Of Interest) related classes and tools
|
| icy.vtk |
Contains VTK library related stuff (wrapper, tools)
|
| plugins.kernel.roi.roi3d |
Contains all 3D ROI classes included in the kernel
|
| plugins.kernel.roi.roi4d |
Contains all 4D ROI classes included in the kernel
|
| Modifier and Type | Field and Description |
|---|---|
java.util.TreeMap<java.lang.Integer,BooleanMask3D> |
BooleanMask4D.mask
Boolean mask 3D array.
|
| Modifier and Type | Method and Description |
|---|---|
BooleanMask3D |
BooleanMask3D.downscale()
Fast 2x down scaling (each 2x2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale(BooleanMask3D mask)
Fast 2x down scaling (each 2x2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale(BooleanMask3D mask,
int nbPointForTrue)
Fast 2x down scaling (each 2x2x2 block points become 1 point).
|
BooleanMask3D |
BooleanMask3D.downscale(int nbPointForTrue)
Fast 2x down scaling (each 2x2x2 block points become 1 point).
|
BooleanMask3D |
BooleanMask3D.downscale2D()
Fast 2x down scaling (each 2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale2D(BooleanMask3D mask)
Fast 2x down scaling (each 2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale2D(BooleanMask3D mask,
int nbPointForTrue)
Fast 2x down scaling (each 2x2 block points become 1 point).
|
BooleanMask3D |
BooleanMask3D.downscale2D(int nbPointForTrue)
Fast 2x down scaling (each 2x2 block points become 1 point).
|
BooleanMask3D |
ROI3D.getBooleanMask(boolean inclusive)
Get the
BooleanMask3D object representing the roi. |
BooleanMask3D |
ROI4D.getBooleanMask3D(int t,
boolean inclusive)
Get the
BooleanMask3D object representing the roi for specified T position. |
BooleanMask3D |
ROI5D.getBooleanMask3D(int t,
int c,
boolean inclusive)
Returns the
BooleanMask3D object representing the XYZ volume content at specified T,
C position. |
BooleanMask3D |
ROI5D.getBooleanMask3D(int z,
int t,
int c,
boolean inclusive)
Returns the
BooleanMask3D object representing the XYZ volume content at specified Z,
T, C position. |
BooleanMask3D |
ROI4D.getBooleanMask3D(int z,
int t,
int c,
boolean inclusive)
Returns the
BooleanMask3D object representing the XYZ volume content at specified Z,
T, C position. |
BooleanMask3D |
ROI3D.getBooleanMask3D(int z,
int t,
int c,
boolean inclusive)
Returns the
BooleanMask3D object representing the XYZ volume content at specified Z,
T, C position. |
static BooleanMask3D |
BooleanMask3D.getExclusiveUnion(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from exclusive union of the mask1 and mask2:
mask1 xor mask2 = result
################ ################
############## ############## ## ##
############ ############ #### ####
########## ########## ###### ######
######## ######## ################
###### ###### ###### ######
#### #### #### ####
## ## ## ##
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static BooleanMask3D |
BooleanMask3D.getIntersection(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from intersection of the mask1 and mask2:
mask1 intersect mask2 = result
################ ################ ################
############## ############## ############
############ ############ ########
########## ########## ####
######## ########
###### ######
#### ####
## ##
|
BooleanMask3D |
BooleanMask4D.getMask3D(int t)
Returns the 3D boolean mask for the specified T position
|
BooleanMask3D |
BooleanMask5D.getMask3D(int t,
int c)
Returns the 3D boolean mask for the specified T, C position
|
static BooleanMask3D |
BooleanMask3D.getSubtraction(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from the subtraction of mask2 from mask1:
mask1 - mask2 = result
################ ################
############## ############## ##
############ ############ ####
########## ########## ######
######## ######## ########
###### ###### ######
#### #### ####
## ## ##
|
static BooleanMask3D |
BooleanMask3D.getUnion(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from union of the mask1 and mask2:
mask1 + mask2 = result
################ ################ ################
############## ############## ################
############ ############ ################
########## ########## ################
######## ######## ################
###### ###### ###### ######
#### #### #### ####
## ## ## ##
|
BooleanMask3D |
BooleanMask3D.upscale()
Fast 2x up scaling (each point become 2x2x2 bloc point).
|
static BooleanMask3D |
BooleanMask3D.upscale(BooleanMask3D mask)
Fast 2x up scaling (each point become 2x2x2 bloc points).
|
BooleanMask3D |
BooleanMask3D.upscale2D()
Fast 2x up scaling (each point become 2x2 bloc point).
|
static BooleanMask3D |
BooleanMask3D.upscale2D(BooleanMask3D mask)
Fast 2x up scaling (each point become 2x2 bloc points).
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
BooleanMask3D.contains(BooleanMask3D booleanMask)
Return true if mask contains the specified 3D mask.
|
boolean |
BooleanMask4D.contains(BooleanMask3D booleanMask,
int t)
Return true if mask contains the specified 3D mask at position t.
|
boolean |
BooleanMask5D.contains(BooleanMask3D booleanMask,
int t,
int c)
Return true if mask contains the specified 3D mask at position T, C
|
static BooleanMask3D |
BooleanMask3D.downscale(BooleanMask3D mask)
Fast 2x down scaling (each 2x2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale(BooleanMask3D mask,
int nbPointForTrue)
Fast 2x down scaling (each 2x2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale2D(BooleanMask3D mask)
Fast 2x down scaling (each 2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.downscale2D(BooleanMask3D mask,
int nbPointForTrue)
Fast 2x down scaling (each 2x2 block points become 1 point).
|
static BooleanMask3D |
BooleanMask3D.getExclusiveUnion(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from exclusive union of the mask1 and mask2:
mask1 xor mask2 = result
################ ################
############## ############## ## ##
############ ############ #### ####
########## ########## ###### ######
######## ######## ################
###### ###### ###### ######
#### #### #### ####
## ## ## ##
|
static BooleanMask3D |
BooleanMask3D.getIntersection(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from intersection of the mask1 and mask2:
mask1 intersect mask2 = result
################ ################ ################
############## ############## ############
############ ############ ########
########## ########## ####
######## ########
###### ######
#### ####
## ##
|
static BooleanMask3D |
BooleanMask3D.getSubtraction(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from the subtraction of mask2 from mask1:
mask1 - mask2 = result
################ ################
############## ############## ##
############ ############ ####
########## ########## ######
######## ######## ########
###### ###### ######
#### #### ####
## ## ##
|
static BooleanMask3D |
BooleanMask3D.getUnion(BooleanMask3D mask1,
BooleanMask3D mask2)
Build resulting mask from union of the mask1 and mask2:
mask1 + mask2 = result
################ ################ ################
############## ############## ################
############ ############ ################
########## ########## ################
######## ######## ################
###### ###### ###### ######
#### #### #### ####
## ## ## ##
|
boolean |
BooleanMask3D.intersects(BooleanMask3D booleanMask)
Return true if mask intersects (contains at least one point) the specified 3D mask region.
|
boolean |
BooleanMask4D.intersects(BooleanMask3D booleanMask,
int t)
Return true if mask intersects (contains at least one point) the specified 3D mask at
position T
|
boolean |
BooleanMask5D.intersects(BooleanMask3D booleanMask,
int t,
int c)
Return true if mask intersects (contains at least one point) the specified 3D mask at
position T, C
|
static BooleanMask3D |
BooleanMask3D.upscale(BooleanMask3D mask)
Fast 2x up scaling (each point become 2x2x2 bloc points).
|
static BooleanMask3D |
BooleanMask3D.upscale2D(BooleanMask3D mask)
Fast 2x up scaling (each point become 2x2 bloc points).
|
| Constructor and Description |
|---|
BooleanMask4D(Rectangle4D.Integer bounds,
BooleanMask3D[] mask)
Build a new 4D boolean mask with specified bounds and 3D mask array.
|
| Modifier and Type | Method and Description |
|---|---|
static BooleanMask3D |
VtkUtil.getBooleanMaskFromBinaryImage(vtk.vtkImageData image,
boolean optimizeBounds)
Returns a
BooleanMask3D from a binary (0/1 values) vtkImageData. |
| Modifier and Type | Method and Description |
|---|---|
void |
ROI3DArea.add(BooleanMask3D mask)
Add the specified
BooleanMask3D content to this ROI3DArea |
void |
ROI3DArea.exclusiveAdd(BooleanMask3D mask)
Exclusively add the specified
BooleanMask3D content to this ROI3DArea |
void |
ROI3DArea.intersect(BooleanMask3D mask)
Intersect the specified
BooleanMask3D content with this ROI3DArea |
void |
ROI3DArea.setAsBooleanMask(BooleanMask3D mask)
Set the mask from a BooleanMask3D object.
|
void |
ROI3DArea.subtract(BooleanMask3D mask)
Subtract the specified
BooleanMask3D from this ROI3DArea |
| Constructor and Description |
|---|
ROI3DArea(BooleanMask3D mask)
Create a 3D Area ROI type from the specified
BooleanMask3D. |
| Modifier and Type | Method and Description |
|---|---|
void |
ROI4DArea.setAsBooleanMask(Rectangle4D.Integer rect,
BooleanMask3D[] mask)
Set the 4D mask from a 3D boolean mask array
|