| Package | Description | 
|---|---|
| icy.gui.component | 
 Contains all custom components related classes (component, UI, renderer, editor...) 
 | 
| icy.plugin.interface_ | 
 All supported plugin interface to specialize plugin in a specific task (Canvas, ROI, file importer...) 
 | 
| icy.roi | 
 Contains all ROI (Region Of Interest) related classes and tools 
 | 
| plugins.kernel.roi.descriptor.intensity | 
 Contains ROI Descriptor plugins for intensity informations (kernel) 
 | 
| plugins.kernel.roi.descriptor.measure | 
 Contains ROI Descriptor plugins for basic size measurements (kernel) 
 | 
| plugins.kernel.roi.descriptor.property | 
 Contains ROI Descriptor plugins for ROI properties (kernel) 
 | 
| Modifier and Type | Field and Description | 
|---|---|
ROIDescriptor | 
AbstractRoisPanel.BaseColumnInfo.descriptor  | 
| Constructor and Description | 
|---|
AbstractRoisPanel.BaseColumnInfo(ROIDescriptor descriptor,
                                                                XMLPreferences preferences,
                                                                boolean export)  | 
| Modifier and Type | Method and Description | 
|---|---|
java.util.Map<ROIDescriptor,java.lang.Object> | 
PluginROIDescriptor.compute(ROI roi,
              Sequence sequence)
Computes the descriptor(s) (declared in the  
PluginROIDescriptor.getDescriptors()) on the specified ROI. | 
java.util.List<ROIDescriptor> | 
PluginROIDescriptor.getDescriptors()
Returns the list of  
ROIDescriptor available in this plug-in. | 
| Modifier and Type | Method and Description | 
|---|---|
static ROIDescriptor | 
ROIDescriptor.getDescriptor(java.util.Collection<ROIDescriptor> descriptors,
                          java.lang.String id)
Returns the descriptor identified by the given id from the given list of  
ROIDescriptor. | 
static ROIDescriptor | 
ROIDescriptor.getDescriptor(java.lang.String id)
Returns the descriptor identified by the given id from the given list of  
ROIDescriptor. | 
| Modifier and Type | Method and Description | 
|---|---|
static java.util.Map<ROIDescriptor,PluginROIDescriptor> | 
ROIDescriptor.getDescriptors()
Returns all available ROI descriptors (see  
ROIDescriptor) and their attached plugin
 (see PluginROIDescriptor). | 
static java.util.Map<ROIDescriptor,PluginROIDescriptor> | 
ROIUtil.getROIDescriptors()
Returns all available ROI descriptors (see  
ROIDescriptor) and their attached plugin
 (see PluginROIDescriptor). | 
| Modifier and Type | Method and Description | 
|---|---|
static java.lang.Object | 
ROIUtil.computeDescriptor(java.util.Collection<ROIDescriptor> roiDescriptors,
                                  java.lang.String descriptorId,
                                  ROI roi,
                                  Sequence sequence)
Computes the specified descriptor from the input  
ROIDescriptor set on given ROI
 and returns the result (or null if the descriptor is not found). | 
static java.lang.Object | 
ROIDescriptor.computeDescriptor(java.util.Collection<ROIDescriptor> roiDescriptors,
                                  java.lang.String descriptorId,
                                  ROI roi,
                                  Sequence sequence)
Computes the specified descriptor from the input  
ROIDescriptor set on given ROI
 and returns the result (or null if the descriptor is not found). | 
static java.lang.Object | 
ROIUtil.computeDescriptor(java.util.Set<ROIDescriptor> roiDescriptors,
                                  java.lang.String descriptorId,
                                  ROI roi,
                                  Sequence sequence)
Deprecated. 
 
 | 
static ROIDescriptor | 
ROIDescriptor.getDescriptor(java.util.Collection<ROIDescriptor> descriptors,
                          java.lang.String id)
Returns the descriptor identified by the given id from the given list of  
ROIDescriptor. | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
ROIMaxIntensityDescriptor
Maximum intensity ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMeanIntensityDescriptor
Mean intensity ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMinIntensityDescriptor
Minimum intensity ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIStandardDeviationDescriptor
Standard Deviation intensity ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROISumIntensityDescriptor
Sum intensity ROI descriptor class (see  
ROIDescriptor) | 
| Modifier and Type | Method and Description | 
|---|---|
java.util.Map<ROIDescriptor,java.lang.Object> | 
ROIIntensityDescriptorsPlugin.compute(ROI roi,
              Sequence sequence)  | 
java.util.List<ROIDescriptor> | 
ROIIntensityDescriptorsPlugin.getDescriptors()  | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
ROIAreaDescriptor
Area ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIContourDescriptor
Contour ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIInteriorDescriptor
Interior ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMassCenterCDescriptor
MassCenter C coordinate ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMassCenterTDescriptor
MassCenter T coordinate ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMassCenterXDescriptor
MassCenter X coordinate ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMassCenterYDescriptor
MassCenter Y coordinate ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIMassCenterZDescriptor
MassCenter Z coordinate ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIPerimeterDescriptor
Perimeter ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROISurfaceAreaDescriptor
Surface area ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIVolumeDescriptor
Volume ROI descriptor class (see  
ROIDescriptor) | 
| Modifier and Type | Method and Description | 
|---|---|
java.util.Map<ROIDescriptor,java.lang.Object> | 
ROIMassCenterDescriptorsPlugin.compute(ROI roi,
              Sequence sequence)  | 
java.util.Map<ROIDescriptor,java.lang.Object> | 
ROIBasicMeasureDescriptorsPlugin.compute(ROI roi,
              Sequence sequence)  | 
java.util.List<ROIDescriptor> | 
ROIMassCenterDescriptorsPlugin.getDescriptors()  | 
java.util.List<ROIDescriptor> | 
ROIBasicMeasureDescriptorsPlugin.getDescriptors()  | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
ROIColorDescriptor  | 
class  | 
ROIGroupIdDescriptor
Group Id descriptor class (see  
ROIDescriptor) | 
class  | 
ROIIconDescriptor
Icon descriptor class (see  
ROIDescriptor). | 
class  | 
ROINameDescriptor
Name descriptor class (see  
ROIDescriptor) | 
class  | 
ROIOpacityDescriptor
Opacity descriptor class (see  
ROIDescriptor) | 
class  | 
ROIPositionCDescriptor
Position C ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIPositionTDescriptor
Position T ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIPositionXDescriptor
Position X ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIPositionYDescriptor
Position Y ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIPositionZDescriptor
Position Z ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROIReadOnlyDescriptor
Read-Only descriptor class (see  
ROIDescriptor) | 
class  | 
ROISizeCDescriptor
Size C ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROISizeTDescriptor
Size T ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROISizeXDescriptor
Size X ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROISizeYDescriptor
Size Y ROI descriptor class (see  
ROIDescriptor) | 
class  | 
ROISizeZDescriptor
Size Z ROI descriptor class (see  
ROIDescriptor) | 
| Modifier and Type | Method and Description | 
|---|---|
java.util.Map<ROIDescriptor,java.lang.Object> | 
ROISizeDescriptorsPlugin.compute(ROI roi,
              Sequence sequence)  | 
java.util.Map<ROIDescriptor,java.lang.Object> | 
ROIPropertyDescriptorsPlugin.compute(ROI roi,
              Sequence sequence)  | 
java.util.Map<ROIDescriptor,java.lang.Object> | 
ROIPositionDescriptorsPlugin.compute(ROI roi,
              Sequence sequence)  | 
java.util.List<ROIDescriptor> | 
ROISizeDescriptorsPlugin.getDescriptors()  | 
java.util.List<ROIDescriptor> | 
ROIPropertyDescriptorsPlugin.getDescriptors()  | 
java.util.List<ROIDescriptor> | 
ROIPositionDescriptorsPlugin.getDescriptors()  |