Package | Description |
---|---|
icy.roi |
Contains all ROI (Region Of Interest) related classes and tools
|
icy.sequence |
Contains Icy Sequence structure definition and associated objects / tools.
|
icy.type.rectangle |
Contains Rectangle class definition up to 5D
|
plugins.kernel.roi.roi5d |
Contains all 5D ROI classes included in the kernel
|
Modifier and Type | Field and Description |
---|---|
Rectangle5D.Integer |
BooleanMask5D.bounds
Region represented by the mask.
|
Modifier and Type | Method and Description |
---|---|
Rectangle5D.Integer |
ROI5D.getBounds()
Returns an integer
Rectangle5D that completely encloses the ROI . |
Rectangle5D.Integer |
BooleanMask5D.getOptimizedBounds()
Optimize mask bounds so it fits mask content.
|
Rectangle5D.Integer |
BooleanMask5D.getOptimizedBounds(boolean compute4DBounds)
Optimize mask bounds so it fits mask content.
|
Modifier and Type | Method and Description |
---|---|
void |
BooleanMask5D.moveBounds(Rectangle5D.Integer value)
Change the bounds of BooleanMask.
|
Constructor and Description |
---|
BooleanMask5D(Rectangle5D.Integer bounds,
BooleanMask4D[] mask)
Build a new 4D boolean mask with specified bounds and 4D mask array.
|
Modifier and Type | Method and Description |
---|---|
Rectangle5D.Integer |
Sequence.getBounds5D()
Returns 5D bounds of sequence {0, 0, 0, 0, 0, sizeX, sizeY, sizeZ, sizeT, sizeC}
|
Modifier and Type | Method and Description |
---|---|
static Sequence |
SequenceUtil.getSubSequence(Sequence source,
Rectangle5D.Integer region)
Creates a new sequence from the specified region of the source sequence.
|
Constructor and Description |
---|
SequenceDataIterator(Sequence sequence,
Rectangle5D.Integer bounds5D)
Create a new SequenceData iterator to iterate data through the specified 5D region
(inclusive).
|
Modifier and Type | Method and Description |
---|---|
Rectangle5D.Integer |
Rectangle5D.toInteger()
Returns an integer
Rectangle5D that completely encloses the
double Rectangle . |
Rectangle5D.Integer |
Rectangle5D.Integer.toInteger() |
Constructor and Description |
---|
Rectangle5D.Integer(Rectangle5D.Integer r) |
Modifier and Type | Method and Description |
---|---|
void |
ROI5DArea.setAsBooleanMask(Rectangle5D.Integer rect,
BooleanMask4D[] mask)
Set the 5D mask from a 4D boolean mask array
|