plugins.kernel.roi.roi3d

Class ROI3DPolyLine

java.lang.Object

icy.roi.ROI

icy.roi.ROI3D

plugins.kernel.roi.roi3d.ROI3DShape

plugins.kernel.roi.roi3d.ROI3DPolyLine

All Implemented Interfaces:

ChangeListener, XMLPersistent, Shape3D

public class ROI3DPolyLine
extends ROI3DShape

3D Polyline ROI

Author:

Stephane Dallongeville

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	ROI3DPolyLine.ROI3DPolyLinePainter

Nested classes/interfaces inherited from class plugins.kernel.roi.roi3d.ROI3DShape

ROI3DShape.ROI3DShapePainter

Nested classes/interfaces inherited from class icy.roi.ROI3D

ROI3D.ROI3DPainter

Nested classes/interfaces inherited from class icy.roi.ROI

ROI.ROIGroupId, ROI.ROIIdComparator, ROI.ROINameComparator, ROI.ROIPainter

Field Summary

Fields inherited from class plugins.kernel.roi.roi3d.ROI3DShape

ID_POINT, ID_POINTS

Fields inherited from class icy.roi.ROI3D

ID_C, ID_T

Fields inherited from class icy.roi.ROI

DEFAULT_COLOR, DEFAULT_NORMAL_COLOR, DEFAULT_OPACITY, DEFAULT_STROKE, defaultColor, defaultOpacity, defaultShowName, defaultStroke, ID_CLASSNAME, ID_COLOR, ID_GROUPID, ID_ID, ID_NAME, ID_OPACITY, ID_PROPERTIES, ID_READONLY, ID_ROI, ID_SELECTED, ID_SHOWNAME, ID_STROKE, idComparator, nameComparator, PROPERTY_COLOR, PROPERTY_CREATING, PROPERTY_GROUPID, PROPERTY_ICON, PROPERTY_NAME, PROPERTY_OPACITY, PROPERTY_READONLY, PROPERTY_SHOWNAME, PROPERTY_STROKE, ROI_CHANGED_ALL, ROI_CHANGED_POSITION

Constructor Summary

Constructors

Constructor and Description
ROI3DPolyLine()
ROI3DPolyLine(java.util.List<Point3D> points)
ROI3DPolyLine(Point3D pt)
ROI3DPolyLine(Point5D pt) Generic constructor for interactive mode
ROI3DPolyLine(Polyline3D polyline)

Method Summary

Methods

Modifier and Type	Method and Description
double	computeNumberOfPoints() Compute and returns the number of point (pixel) contained in the ROI.
boolean	contains(ROI roi) Tests if the ROI entirely contains the specified ROI.
static void	drawLine3DInBooleanMask2D(java.awt.Rectangle bounds2d, boolean[] result, int z, Point3D p1, Point3D p2)
boolean[]	getBooleanMask2D(int x, int y, int width, int height, int z, boolean inclusive) Get the boolean bitmap mask for the specified rectangular area of the roi and for the specified Z position.
java.lang.String	getDefaultName()
Polyline3D	getPolyline3D()
boolean	loadFromXML(org.w3c.dom.Node node) LOAD
void	onChanged(CollapsibleEvent object) roi changed
boolean	saveToXML(org.w3c.dom.Node node) SAVE
void	setPoints(java.util.List<Point3D> pts)
void	setPolyline3D(Polyline3D value)

Methods inherited from class plugins.kernel.roi.roi3d.ROI3DShape

addNewPoint, addPoint, canAddPoint, canRemovePoint, canTranslate, computeBounds3D, computeNumberOfContourPoints, computeSurfaceArea, contains, contains, contains, contains, controlPointOverlayChanged, controlPointPositionChanged, getControlPoints, getLength, getPoints, getShape, hasSelectedPoint, intersects, intersects, isOverEdge, removePoint, removeSelectedPoint, translate, unselectAllPoints

Methods inherited from class icy.roi.ROI3D

canSetBounds, canSetPosition, computeBounds5D, contains, contains, getBooleanMask, getBooleanMask2D, getBooleanMask2D, getBooleanMask2D, getBooleanMask2D, getBooleanMask3D, getBounds, getBounds3D, getC, getDimension, getPosition, getPosition3D, getROI3DList, getROI3DList, getSurfaceArea, getSurfaceArea, getT, getVolume, intersects, intersects, isActiveFor, isActiveFor, isOverEdge, isOverEdge, isOverEdge, setBounds3D, setBounds5D, setC, setPosition3D, setPosition5D, setT

Methods inherited from class icy.roi.ROI

add, addListener, attachTo, beginUpdate, canvasToImageDeltaX, canvasToImageDeltaY, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaX, canvasToImageLogDeltaY, canvasToImageLogDeltaY, canvasToImageLogDeltaY, canvasToImageLogDeltaY, contains, contains, copyFrom, create, create, create, create, createFromXML, delete, delete, detachFrom, detachFromAll, detachFromAll, endUpdate, exclusiveAdd, focusChanged, getAdjustedStroke, getAdjustedStroke, getBooleanMask2D, getBounds5D, getClassName, getColor, getCopy, getDefaultColor, getDefaultOpacity, getDefaultShowName, getDefaultStroke, getDisplayColor, getExclusiveUnion, getFirstSequence, getFocusedColor, getGroupId, getIcon, getId, getIntersection, getName, getNameSuffix, getNumberOfContourPoints, getNumberOfPoints, getOpacity, getOverlay, getPainter, getPerimeter, getPosition5D, getProperties, getProperty, getPropertyValue, getROICount, getROIList, getROIList, getROIList, getROIsFromXML, getSelectedColor, getSequences, getShowName, getSimpleClassName, getStroke, getSubROI, getSubtraction, getUnion, internalFocus, internalSelect, internalUnfocus, internalUnselect, intersect, intersects, isAttached, isCreating, isDefaultName, isEditable, isEmpty, isFocused, isReadOnly, isSelected, isUpdating, loadFromXML, loadROIsFromXML, merge, mergeWith, nameChanged, painterChanged, propertyChanged, remove, remove, removeListener, roiChanged, roiChanged, roiChanged, saveROIsToXML, selectionChanged, setColor, setCreating, setDefaultColor, setDefaultOpacity, setDefaultShowName, setDefaultStroke, setEditable, setFocused, setGroupId, setIcon, setMousePos, setName, setOpacity, setProperty, setPropertyValue, setReadOnly, setROIsFromXML, setSelected, setSelected, setSelectedColor, setShowName, setStroke, subtract

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface icy.type.geom.Shape3D

getBounds

Constructor Detail

ROI3DPolyLine

public ROI3DPolyLine(Point3D pt)

ROI3DPolyLine

public ROI3DPolyLine(Point5D pt)

Generic constructor for interactive mode

ROI3DPolyLine

public ROI3DPolyLine(Polyline3D polyline)

ROI3DPolyLine

public ROI3DPolyLine(java.util.List<Point3D> points)

ROI3DPolyLine

public ROI3DPolyLine()

Method Detail

getDefaultName

public java.lang.String getDefaultName()

Overrides:

getDefaultName in class ROI3DShape

Returns:

the default name for this ROI class

getPolyline3D

public Polyline3D getPolyline3D()

setPoints

public void setPoints(java.util.List<Point3D> pts)

setPolyline3D

public void setPolyline3D(Polyline3D value)

getBooleanMask2D

public boolean[] getBooleanMask2D(int x,
                         int y,
                         int width,
                         int height,
                         int z,
                         boolean inclusive)

Description copied from class: ROI3D

Get the boolean bitmap mask for the specified rectangular area of the roi and for the specified Z position.
if the pixel (x,y) is contained in the roi Z position then result[(y * width) + x] = true
if the pixel (x,y) is not contained in the roi Z position then result[(y * width) + x] = false

Overrides:

getBooleanMask2D in class ROI3D

Parameters:

x - the X coordinate of the upper-left corner of the specified rectangular area

y - the Y coordinate of the upper-left corner of the specified rectangular area

width - the width of the specified rectangular area

height - the height of the specified rectangular area

z - Z position we want to retrieve the boolean mask

inclusive - If true then all partially contained (intersected) pixels are included in the mask.

Returns:

the boolean bitmap mask

drawLine3DInBooleanMask2D

public static void drawLine3DInBooleanMask2D(java.awt.Rectangle bounds2d,
                             boolean[] result,
                             int z,
                             Point3D p1,
                             Point3D p2)

onChanged

public void onChanged(CollapsibleEvent object)

roi changed

Specified by:

onChanged in interface ChangeListener

Overrides:

onChanged in class ROI3DShape

computeNumberOfPoints

public double computeNumberOfPoints()

Description copied from class: ROI

Compute and returns the number of point (pixel) contained in the ROI.

Overrides:

computeNumberOfPoints in class ROI3DShape

contains

public boolean contains(ROI roi)

Description copied from class: ROI

Tests if the ROI entirely contains the specified ROI. WARNING: this method may be "pixel accurate" only depending the internal implementation.

Overrides:

contains in class ROI3D

Returns:

true if the current ROI entirely contains the specified ROI; false otherwise.

loadFromXML

public boolean loadFromXML(org.w3c.dom.Node node)

Description copied from interface: XMLPersistent

LOAD

Specified by:

loadFromXML in interface XMLPersistent

Overrides:

loadFromXML in class ROI3DShape

saveToXML

public boolean saveToXML(org.w3c.dom.Node node)

Description copied from interface: XMLPersistent

SAVE

Specified by:

saveToXML in interface XMLPersistent

Overrides:

saveToXML in class ROI3D