Package | Description |
---|---|
icy.canvas |
Contains base Icy canvas and related classes
|
icy.common |
Contains common shared object and classes in Icy
|
icy.gui.frame.progress |
Contains custom progress frames (see TaskFrameManager)
|
icy.gui.viewer |
Contains all components and classes related to the Icy Viewer
|
icy.image |
Contains all Image related stuff as the Icy image data structure, ColorModel, ColorSpace, ColorMap, Image tools...
|
icy.imagej |
Contains all ImageJ related stuff (wrapper, integration...)
|
icy.network |
Contains network tools and related objects (download / upload operation, IRC...)
|
icy.plugin.abstract_ |
Plugin abstract classes
|
icy.sequence |
Contains Icy Sequence structure definition and associated objects / tools.
|
plugins.kernel.importer |
Contains all Importer type plugins for the kernel
|
Modifier and Type | Method and Description |
---|---|
Sequence |
IcyCanvas.getRenderedSequence(boolean canvasView,
ProgressListener progressListener)
Return a sequence which contains rendered images.
|
Modifier and Type | Interface and Description |
---|---|
interface |
ProgressListener
Deprecated.
Use
ProgressListener instead |
Modifier and Type | Class and Description |
---|---|
class |
CancelableProgressFrame |
class |
DownloadFrame |
class |
FileFrame
display a loading TaskFrame
|
class |
ProgressFrame
A progress TaskFrame (thread safe)
|
Modifier and Type | Method and Description |
---|---|
Sequence |
Viewer.getRenderedSequence(boolean canvasView,
ProgressListener progressListener) |
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
AbstractImageProvider.getPixelsByTile(int series,
int resolution,
java.awt.Rectangle region,
int z,
int t,
int c,
int tileW,
int tileH,
ProgressListener listener)
Returns the pixels located at specified position using tile by tile reading (if supported by the importer).
|
Modifier and Type | Method and Description |
---|---|
static Sequence |
ImageJUtil.convertToIcySequence(ij.ImagePlus image,
ProgressListener progressListener)
Convert the specified ImageJ
ImagePlus object to Icy Sequence |
static ij.ImagePlus |
ImageJUtil.convertToImageJImage(Sequence sequence,
boolean useRoiManager,
ProgressListener progressListener)
Convert the specified Icy
Sequence object to ImageJ ImagePlus |
static ij.ImagePlus |
ImageJUtil.convertToImageJImage(Sequence sequence,
ProgressListener progressListener)
Convert the specified Icy
Sequence object to ImageJ ImagePlus |
Modifier and Type | Method and Description |
---|---|
static byte[] |
NetworkUtil.download(java.io.File f,
ProgressListener listener,
boolean displayError)
Download data from File and return it as an array of byte.
|
static byte[] |
NetworkUtil.download(java.io.InputStream in,
long len,
ProgressListener listener)
Download data from specified InputStream and return it as an array of byte.
|
static byte[] |
NetworkUtil.download(java.lang.String path,
ProgressListener listener,
boolean displayError)
Download data from specified URL string and return it as an array of byte
|
static byte[] |
NetworkUtil.download(java.lang.String path,
java.lang.String login,
java.lang.String pass,
ProgressListener listener,
boolean displayError)
Download data from specified URL string and return it as an array of byte
Process authentication process if login / pass are not null.
|
static byte[] |
NetworkUtil.download(java.net.URL url,
ProgressListener listener,
boolean displayError)
Download data from specified URL and return it as an array of byte
|
static byte[] |
NetworkUtil.download(java.net.URL url,
java.lang.String login,
java.lang.String pass,
ProgressListener listener,
boolean displayError)
Download data from specified URL and return it as an array of byte.
|
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
PluginSequenceIdImporter.getPixelsByTile(int series,
int resolution,
java.awt.Rectangle region,
int z,
int t,
int c,
int tileW,
int tileH,
ProgressListener listener)
|
java.lang.Object |
PluginSequenceFileImporter.getPixelsByTile(int series,
int resolution,
java.awt.Rectangle region,
int z,
int t,
int c,
int tileW,
int tileH,
ProgressListener listener)
|
Modifier and Type | Method and Description |
---|---|
static Sequence |
SequenceUtil.concatC(Sequence[] sequences,
boolean fillEmpty,
boolean rescale,
ProgressListener pl)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static Sequence |
SequenceUtil.concatC(Sequence[] sequences,
int[] channels,
boolean fillEmpty,
boolean rescale,
ProgressListener pl)
Create and returns a new sequence by concatenating all given sequences on C dimension.
|
static Sequence |
SequenceUtil.concatT(Sequence[] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale,
ProgressListener pl)
Create and returns a new sequence by concatenating all given sequences on T dimension.
|
static Sequence |
SequenceUtil.concatZ(Sequence[] sequences,
boolean interlaced,
boolean fillEmpty,
boolean rescale,
ProgressListener pl)
Create and returns a new sequence by concatenating all given sequences on Z dimension.
|
Modifier and Type | Method and Description |
---|---|
IcyBufferedImage |
LociImporterPlugin.getImageByTile(int series,
int resolution,
java.awt.Rectangle region,
int z,
int t,
int c,
int tileW,
int tileH,
ProgressListener listener) |
java.lang.Object |
LociImporterPlugin.getPixelsByTile(int series,
int resolution,
java.awt.Rectangle region,
int z,
int t,
int c,
int tileW,
int tileH,
ProgressListener listener) |