Uses of Class
icy.image.IcyBufferedImage

Packages that use IcyBufferedImage

Package	Description
icy.canvas	Contains base Icy canvas and related classes
icy.file	Contains all file operation tools and related objects
icy.gui.main	Contains graphic components and objects for the main interface
icy.gui.viewer	Contains all components and classes related to the Icy Viewer
icy.image	Contains all Image related stuff as the Icy image data structure, ColorModel, ColorSpace, ColorMap, Image tools...
icy.image.cache
icy.imagej	Contains all ImageJ related stuff (wrapper, integration...)
icy.plugin.abstract_	Plugin abstract classes
icy.plugin.interface_	All supported plugin interface to specialize plugin in a specific task (Canvas, ROI, file importer...)
icy.sequence	Contains Icy Sequence structure definition and associated objects / tools.
icy.util	Contains common utilities classes (String, XLS, XML, ZIP, JAR, OME, Graphics, Date, Shape, Class...)
plugins.kernel.importer	Contains all Importer type plugins for the kernel

Uses of IcyBufferedImage in icy.canvas

Methods in icy.canvas that return IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	IcyCanvas.getCurrentImage() Get the current image.
IcyBufferedImage	IcyCanvas.getImage(int t, int z) Deprecated. Use IcyCanvas.getImage(int, int, int) with C = -1 instead.
IcyBufferedImage	IcyCanvas.getImage(int t, int z, int c) Gets the image at position (t, z, c).

Uses of IcyBufferedImage in icy.file

Methods in icy.file that return IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	SequenceFileGroupImporter.getImage(int series, int resolution, java.awt.Rectangle rectangle, int z, int t, int c)
IcyBufferedImage	SequenceFileGroupImporter.getThumbnail(int series)
static IcyBufferedImage	Loader.loadImage(java.io.File file) Deprecated. Use Loader.loadImage(String) instead.
static IcyBufferedImage	Loader.loadImage(java.io.File file, int z, int t) Deprecated. Use Loader.loadImage(String, int, int) instead.
static IcyBufferedImage	Loader.loadImage(loci.formats.IFormatReader reader) Deprecated. Use createFrom(IFormatReader, int, int) with Z and T parameters set to 0.
static IcyBufferedImage	Loader.loadImage(loci.formats.IFormatReader reader, int z, int t) Deprecated. Use createFrom(IFormatReader, int, int) instead.
static IcyBufferedImage	Loader.loadImage(SequenceFileImporter importer, java.lang.String path, int series, int z, int t) Load and return the image at given position from the specified file path.
static IcyBufferedImage	Loader.loadImage(java.lang.String path) Load and return a single image from the specified file path.
static IcyBufferedImage	Loader.loadImage(java.lang.String path, int z, int t) Deprecated. Use Loader.loadImage(String, int, int, int) instead.
static IcyBufferedImage	Loader.loadImage(java.lang.String path, int series, int z, int t) Load and return the image at given position from the specified file path.
static IcyBufferedImage	Loader.loadThumbnail(SequenceFileImporter importer, java.lang.String path, int series) Returns a thumbnail of the specified image file path.
static IcyBufferedImage	Loader.loadThumbnail(java.lang.String path, int series) Returns a thumbnail of the specified image file path.

Methods in icy.file with parameters of type IcyBufferedImage

Modifier and Type	Method and Description
static void	Saver.saveImage(IcyBufferedImage image, java.io.File file, boolean force) Save a single image to the specified file

Uses of IcyBufferedImage in icy.gui.main

Methods in icy.gui.main that return IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	MainInterfaceGui.getActiveImage()
IcyBufferedImage	MainInterfaceBatch.getActiveImage()
IcyBufferedImage	MainInterface.getActiveImage() Returns the current active image.
IcyBufferedImage	MainInterfaceGui.getFocusedImage() Deprecated.
IcyBufferedImage	MainInterfaceBatch.getFocusedImage()
IcyBufferedImage	MainInterface.getFocusedImage() Deprecated. Use MainInterface.getActiveImage() instead.

Uses of IcyBufferedImage in icy.gui.viewer

Methods in icy.gui.viewer that return IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	Viewer.getCurrentImage() Get the current image
IcyBufferedImage	Viewer.getImage(int t, int z) Deprecated. Use Viewer.getImage(int, int, int) with C = -1 instead.
IcyBufferedImage	Viewer.getImage(int t, int z, int c) Delegation for IcyCanvas.getImage(int, int, int)

Uses of IcyBufferedImage in icy.image

Methods in icy.image that return IcyBufferedImage

Modifier and Type	Method and Description
static IcyBufferedImage	IcyBufferedImageUtil.addChannel(IcyBufferedImage source) Add an empty channel to the specified image and return result as a new image.
static IcyBufferedImage	IcyBufferedImageUtil.addChannel(IcyBufferedImage source, int index) Add an empty channel to the specified image and return result as a new image.
static IcyBufferedImage	IcyBufferedImageUtil.addChannels(IcyBufferedImage source, int index, int num) Add empty channel(s) to the specified image and return result as a new image.
static IcyBufferedImage	IcyBufferedImage.convert(java.awt.image.BufferedImage image) Deprecated. use createFrom(java.util.List<? extends java.awt.image.BufferedImage>) instead
static IcyBufferedImage	IcyBufferedImage.convert(java.util.List<java.awt.image.BufferedImage> imageList) Deprecated. use createFrom(java.util.List<? extends java.awt.image.BufferedImage>) instead
IcyBufferedImage	IcyBufferedImage.convertToType(DataType dataType, boolean rescale) Deprecated. Uses IcyBufferedImageUtil.convertToType(IcyBufferedImage, DataType, boolean) instead.
IcyBufferedImage	IcyBufferedImage.convertToType(DataType dataType, Scaler scaler) Deprecated. Uses IcyBufferedImageUtil.convertType(IcyBufferedImage, DataType, Scaler[]) instead.
static IcyBufferedImage	IcyBufferedImageUtil.convertToType(IcyBufferedImage source, DataType dataType, boolean rescale) Convert the source image to the specified data type.
static IcyBufferedImage	IcyBufferedImageUtil.convertToType(IcyBufferedImage source, DataType dataType, boolean rescale, boolean useDataBounds) Convert the source image to the specified data type.
static IcyBufferedImage	IcyBufferedImageUtil.convertToType(IcyBufferedImage source, DataType dataType, Scaler scaler) Deprecated. Use IcyBufferedImageUtil.convertType(IcyBufferedImage, DataType, Scaler[]) instead.
IcyBufferedImage	IcyBufferedImage.convertToType(int dataType, boolean signed, boolean rescale) Deprecated. Uses IcyBufferedImageUtil.convertToType(IcyBufferedImage,DataType, boolean) instead
IcyBufferedImage	IcyBufferedImage.convertToType(int dataType, boolean signed, Scaler scaler) Deprecated. Uses IcyBufferedImageUtil.convertType(IcyBufferedImage,DataType, Scaler[]) instead.
static IcyBufferedImage	IcyBufferedImageUtil.convertType(IcyBufferedImage source, DataType dataType, Scaler[] scalers) Convert the source image to the specified data type.
static IcyBufferedImage	IcyBufferedImage.createCompatibleThumbnailFrom(loci.formats.IFormatReader reader, int z, int t) Deprecated. Use LociImporterPlugin.getThumbnailCompatible(IFormatReader, int, int, int) instead.
static IcyBufferedImage	IcyBufferedImage.createEmptyImage(int width, int height, IcyColorModel cm) Deprecated. Use IcyBufferedImage(int, int, IcyColorModel) instead.
static IcyBufferedImage	IcyBufferedImage.createFrom(java.awt.image.BufferedImage image) Create an IcyBufferedImage from a BufferedImage.
static IcyBufferedImage	IcyBufferedImage.createFrom(loci.formats.IFormatReader reader, int z, int t) Deprecated. Use LociImporterPlugin.getImage(IFormatReader, Rectangle, int, int) instead.
static IcyBufferedImage	IcyBufferedImage.createFrom(loci.formats.IFormatReader reader, int x, int y, int w, int h, int z, int t, int c) Deprecated. Use LociImporterPlugin.getImage(IFormatReader, Rectangle, int, int, int, int) instead.
static IcyBufferedImage	IcyBufferedImage.createFrom(java.util.List<? extends java.awt.image.BufferedImage> imageList) Create an IcyBufferedImage (multi component) from a list of BufferedImage.
static IcyBufferedImage	IcyBufferedImage.createFrom(javax.media.jai.PlanarImage image) Create an IcyBufferedImage from a PlanarImage.
static IcyBufferedImage	IcyBufferedImage.createFrom(javax.media.jai.PlanarImage image, boolean signedDataType) Create an IcyBufferedImage from a PlanarImage.
static IcyBufferedImage	IcyBufferedImage.createThumbnailFrom(loci.formats.IFormatReader reader, int z, int t) Deprecated. Use LociImporterPlugin.getThumbnail(IFormatReader, int, int, int) instead.
static IcyBufferedImage	IcyBufferedImageUtil.downscaleBy2(IcyBufferedImage input, boolean filter) Returns a down scaled by a factor of 2 of the input image (X and Y resolution are divided by 2).
static IcyBufferedImage	IcyBufferedImageUtil.downscaleBy2(IcyBufferedImage input, boolean filter, IcyBufferedImage output) Returns a down scaled by a factor of 2 of the input image (X and Y resolution are divided by 2).
static IcyBufferedImage	IcyBufferedImageUtil.downscaleBy2(IcyBufferedImage source, boolean filter, int level) Down scale the specified image with the given down scale factor.
IcyBufferedImage	IcyBufferedImage.extractBand(int bandNumber) Deprecated. Use IcyBufferedImageUtil.extractChannel(IcyBufferedImage, int) instead
IcyBufferedImage	IcyBufferedImage.extractBands(java.util.List<java.lang.Integer> bandNumbers) Deprecated. Use IcyBufferedImageUtil.extractChannels(IcyBufferedImage, List) instead
static IcyBufferedImage	IcyBufferedImageUtil.extractChannel(IcyBufferedImage source, int channel) Build a new single channel image (greyscale) from the specified source image channel.
IcyBufferedImage	IcyBufferedImage.extractChannel(int channelNumber) Deprecated. Use IcyBufferedImageUtil.extractChannel(IcyBufferedImage, int) instead.
static IcyBufferedImage	IcyBufferedImageUtil.extractChannels(IcyBufferedImage source, int... channels) Build a new image from the specified source image channels.
static IcyBufferedImage	IcyBufferedImageUtil.extractChannels(IcyBufferedImage source, java.util.List<java.lang.Integer> channelNumbers) Deprecated. Use IcyBufferedImageUtil.extractChannels(IcyBufferedImage, int[]) instead.
IcyBufferedImage	IcyBufferedImage.extractChannels(java.util.List<java.lang.Integer> channelNumbers) Deprecated. Use IcyBufferedImageUtil.extractChannels(IcyBufferedImage, List) instead.
IcyBufferedImage	IcyBufferedImage.getCopy() Deprecated. Use IcyBufferedImageUtil.getCopy(IcyBufferedImage) instead
static IcyBufferedImage	IcyBufferedImageUtil.getCopy(IcyBufferedImage source) Create a copy of the specified image.
static IcyBufferedImage	IcyBufferedImage.getIcyBufferedImage(int idHashCode) Retrieve an IcyBufferedImage from its identity hash code
static IcyBufferedImage	IcyBufferedImage.getIcyBufferedImage(java.lang.Integer idHashCode) Retrieve an IcyBufferedImage from its identity hash code
IcyBufferedImage	IcyBufferedImageEvent.getImage()
IcyBufferedImage	IcyBufferedImage.getImage(int c) Return a single component image corresponding to the component c of current image.
IcyBufferedImage	ImageProvider.getImage(int z, int t) Returns the image located at specified position.
IcyBufferedImage	AbstractImageProvider.getImage(int z, int t)
IcyBufferedImage	ImageProvider.getImage(int series, int z, int t) Returns the image located at specified position.
IcyBufferedImage	AbstractImageProvider.getImage(int series, int z, int t)
IcyBufferedImage	ImageProvider.getImage(int series, int resolution, int z, int t) Returns the image located at specified position.
IcyBufferedImage	AbstractImageProvider.getImage(int series, int resolution, int z, int t)
IcyBufferedImage	ImageProvider.getImage(int series, int resolution, int z, int t, int c) Returns the image located at specified position.
IcyBufferedImage	AbstractImageProvider.getImage(int series, int resolution, int z, int t, int c)
IcyBufferedImage	ImageProvider.getImage(int series, int resolution, java.awt.Rectangle region, int z, int t) Returns the image located at specified position.
IcyBufferedImage	AbstractImageProvider.getImage(int series, int resolution, java.awt.Rectangle rectangle, int z, int t)
IcyBufferedImage	ImageProvider.getImage(int series, int resolution, java.awt.Rectangle region, int z, int t, int c) Returns the image located at specified position.
IcyBufferedImage	IcyBufferedImage.getScaledCopy(int width, int height) Deprecated. Use IcyBufferedImageUtil.scale(IcyBufferedImage, int, int) instead.
IcyBufferedImage	IcyBufferedImage.getScaledCopy(int width, int height, boolean resizeContent, int xAlign, int yAlign) Deprecated. Uses IcyBufferedImageUtil.scale(IcyBufferedImage, int, int, boolean, int, int) instead.
IcyBufferedImage	IcyBufferedImage.getScaledCopy(int width, int height, boolean resizeContent, int xAlign, int yAlign, IcyBufferedImage.FilterType filterType) Deprecated. Uses IcyBufferedImageUtil.scale(IcyBufferedImage, int, int, boolean, int, int, IcyBufferedImageUtil.FilterType) instead.
IcyBufferedImage	IcyBufferedImage.getScaledCopy(int width, int height, IcyBufferedImage.FilterType filterType) Deprecated. Uses IcyBufferedImageUtil.scale(IcyBufferedImage, int, int, IcyBufferedImageUtil.FilterType) instead.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, int x, int y, int w, int h) Creates a new image which is a sub part of the source image from the specified coordinates and dimensions.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, int x, int y, int c, int sizeX, int sizeY, int sizeC) Deprecated. Use IcyBufferedImageUtil.getSubImage(IcyBufferedImage, Rectangle, int, int) instead.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, java.awt.Rectangle region) Creates a new image which is a sub part of the source image from the specified region.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, java.awt.Rectangle region, int c, int sizeC) Creates a new image from the specified region of the source image.
IcyBufferedImage	IcyBufferedImage.getSubimage(int x, int y, int w, int h) Deprecated.
IcyBufferedImage	IcyBufferedImage.getSubImageCopy(int x, int y, int w, int h) Deprecated. Uses IcyBufferedImageUtil.getSubImage(IcyBufferedImage, int, int, int, int) instead
IcyBufferedImage	ImageProvider.getThumbnail(int series) Returns the image thumbnail for the specified series of the image.
IcyBufferedImage	AbstractImageProvider.getThumbnail(int series)
static IcyBufferedImage	IcyBufferedImageUtil.rotate(IcyBufferedImage source, double angle) Return a rotated version of the source image with specified parameters.
static IcyBufferedImage	IcyBufferedImageUtil.rotate(IcyBufferedImage source, double xOrigin, double yOrigin, double angle, IcyBufferedImageUtil.FilterType filterType) Return a rotated version of the source image with specified parameters.
static IcyBufferedImage	IcyBufferedImageUtil.rotate(IcyBufferedImage source, double angle, IcyBufferedImageUtil.FilterType filterType) Return a rotated version of the source image with specified parameters.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height) Return a copy of the image with specified size.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height, boolean resizeContent, int xAlign, int yAlign) Return a copy of the image with specified size.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height, boolean resizeContent, int xAlign, int yAlign, IcyBufferedImageUtil.FilterType filterType) Return a copy of the source image with specified size, alignment rules and filter type.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height, IcyBufferedImageUtil.FilterType filterType) Return a copy of the image with specified size
static IcyBufferedImage	IcyBufferedImageUtil.toIcyBufferedImage(java.awt.image.BufferedImage image) Deprecated. Use createFrom(BufferedImage) instead.
static IcyBufferedImage	IcyBufferedImageUtil.toIcyBufferedImage(java.util.List<java.awt.image.BufferedImage> images) Deprecated. Use createFrom(List) instead.

Methods in icy.image with parameters of type IcyBufferedImage

Modifier and Type	Method and Description
static IcyBufferedImage	IcyBufferedImageUtil.addChannel(IcyBufferedImage source) Add an empty channel to the specified image and return result as a new image.
static IcyBufferedImage	IcyBufferedImageUtil.addChannel(IcyBufferedImage source, int index) Add an empty channel to the specified image and return result as a new image.
static IcyBufferedImage	IcyBufferedImageUtil.addChannels(IcyBufferedImage source, int index, int num) Add empty channel(s) to the specified image and return result as a new image.
static IcyBufferedImage	IcyBufferedImageUtil.convertToType(IcyBufferedImage source, DataType dataType, boolean rescale) Convert the source image to the specified data type.
static IcyBufferedImage	IcyBufferedImageUtil.convertToType(IcyBufferedImage source, DataType dataType, boolean rescale, boolean useDataBounds) Convert the source image to the specified data type.
static IcyBufferedImage	IcyBufferedImageUtil.convertToType(IcyBufferedImage source, DataType dataType, Scaler scaler) Deprecated. Use IcyBufferedImageUtil.convertType(IcyBufferedImage, DataType, Scaler[]) instead.
static IcyBufferedImage	IcyBufferedImageUtil.convertType(IcyBufferedImage source, DataType dataType, Scaler[] scalers) Convert the source image to the specified data type.
void	IcyBufferedImage.copyData(IcyBufferedImage srcImage, java.awt.Rectangle srcRect, java.awt.Point dstPt) Copy data from an image (notify data changed)
void	IcyBufferedImage.copyData(IcyBufferedImage srcImage, java.awt.Rectangle srcRect, java.awt.Point dstPt, int srcChannel, int dstChannel) Copy data from an image (notify data changed)
static IcyBufferedImage	IcyBufferedImageUtil.downscaleBy2(IcyBufferedImage input, boolean filter) Returns a down scaled by a factor of 2 of the input image (X and Y resolution are divided by 2).
static IcyBufferedImage	IcyBufferedImageUtil.downscaleBy2(IcyBufferedImage input, boolean filter, IcyBufferedImage output) Returns a down scaled by a factor of 2 of the input image (X and Y resolution are divided by 2).
static IcyBufferedImage	IcyBufferedImageUtil.downscaleBy2(IcyBufferedImage source, boolean filter, int level) Down scale the specified image with the given down scale factor.
static IcyBufferedImage	IcyBufferedImageUtil.extractChannel(IcyBufferedImage source, int channel) Build a new single channel image (greyscale) from the specified source image channel.
static IcyBufferedImage	IcyBufferedImageUtil.extractChannels(IcyBufferedImage source, int... channels) Build a new image from the specified source image channels.
static IcyBufferedImage	IcyBufferedImageUtil.extractChannels(IcyBufferedImage source, java.util.List<java.lang.Integer> channelNumbers) Deprecated. Use IcyBufferedImageUtil.extractChannels(IcyBufferedImage, int[]) instead.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.getARGBImage(IcyBufferedImage source) Convert the current IcyBufferedImage into a ARGB BufferedImage.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.getARGBImage(IcyBufferedImage source, java.awt.image.BufferedImage dest) Deprecated. Use IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage) instead.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.getARGBImage(IcyBufferedImage source, LUT lut) Convert the current IcyBufferedImage into a ARGB BufferedImage.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.getARGBImage(IcyBufferedImage source, LUT lut, java.awt.image.BufferedImage dest) Deprecated. Use IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage, BufferedImage, LUT) instead.
static IcyBufferedImage	IcyBufferedImageUtil.getCopy(IcyBufferedImage source) Create a copy of the specified image.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, int x, int y, int w, int h) Creates a new image which is a sub part of the source image from the specified coordinates and dimensions.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, int x, int y, int c, int sizeX, int sizeY, int sizeC) Deprecated. Use IcyBufferedImageUtil.getSubImage(IcyBufferedImage, Rectangle, int, int) instead.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, java.awt.Rectangle region) Creates a new image which is a sub part of the source image from the specified region.
static IcyBufferedImage	IcyBufferedImageUtil.getSubImage(IcyBufferedImage source, java.awt.Rectangle region, int c, int sizeC) Creates a new image from the specified region of the source image.
static IcyBufferedImage	IcyBufferedImageUtil.rotate(IcyBufferedImage source, double angle) Return a rotated version of the source image with specified parameters.
static IcyBufferedImage	IcyBufferedImageUtil.rotate(IcyBufferedImage source, double xOrigin, double yOrigin, double angle, IcyBufferedImageUtil.FilterType filterType) Return a rotated version of the source image with specified parameters.
static IcyBufferedImage	IcyBufferedImageUtil.rotate(IcyBufferedImage source, double angle, IcyBufferedImageUtil.FilterType filterType) Return a rotated version of the source image with specified parameters.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height) Return a copy of the image with specified size.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height, boolean resizeContent, int xAlign, int yAlign) Return a copy of the image with specified size.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height, boolean resizeContent, int xAlign, int yAlign, IcyBufferedImageUtil.FilterType filterType) Return a copy of the source image with specified size, alignment rules and filter type.
static IcyBufferedImage	IcyBufferedImageUtil.scale(IcyBufferedImage source, int width, int height, IcyBufferedImageUtil.FilterType filterType) Return a copy of the image with specified size
static java.awt.image.BufferedImage	IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage source, java.awt.image.BufferedImage dest) Draw the source IcyBufferedImage into the destination BufferedImage If dest is null then a new TYPE_INT_ARGB BufferedImage is returned.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage source, java.awt.image.BufferedImage dest, LUT lut) Draw the source IcyBufferedImage into the destination BufferedImage If dest is null then a new TYPE_INT_ARGB BufferedImage is returned.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage source, int imageType) Convert the current IcyBufferedImage into a BufferedImage of the specified type.
static java.awt.image.BufferedImage	IcyBufferedImageUtil.toBufferedImage(IcyBufferedImage source, int imageType, LUT lut) Convert the current IcyBufferedImage into a BufferedImage of the specified type.
static void	IcyBufferedImageUtil.translate(IcyBufferedImage source, int dx, int dy) Translate image internal data (all channels) by the specified (x,y) vector.
static void	IcyBufferedImageUtil.translate(IcyBufferedImage source, int dx, int dy, int channel) Translate image internal data of specified channel by the specified (x,y) vector.

Constructors in icy.image with parameters of type IcyBufferedImage

Constructor and Description
IcyBufferedImageEvent(IcyBufferedImage image, IcyBufferedImageEvent.IcyBufferedImageEventType type)
IcyBufferedImageEvent(IcyBufferedImage image, IcyBufferedImageEvent.IcyBufferedImageEventType type, int param)
ImageDataIterator(IcyBufferedImage image) Deprecated. Use ImageDataIterator.ImageDataIterator(IcyBufferedImage, int) instead. The ImageDataIterator iterate only on single channel data.
ImageDataIterator(IcyBufferedImage image, BooleanMask2D maskXY) Deprecated. Use ImageDataIterator.ImageDataIterator(IcyBufferedImage, BooleanMask2D, int) instead
ImageDataIterator(IcyBufferedImage image, BooleanMask2D maskXY, int channel) Create a new ImageData iterator to iterate data through the specified BooleanMask2D and C dimension.
ImageDataIterator(IcyBufferedImage image, int c) Create a new ImageData iterator to iterate data of specified channel.
ImageDataIterator(IcyBufferedImage image, int startX, int endX, int startY, int endY, int c) Deprecated. Use ImageDataIterator.ImageDataIterator(IcyBufferedImage, Rectangle, int) instead.
ImageDataIterator(IcyBufferedImage image, int startX, int endX, int startY, int endY, int startC, int endC) Deprecated. Use ImageDataIterator.ImageDataIterator(IcyBufferedImage, Rectangle, int) instead.
ImageDataIterator(IcyBufferedImage image, java.awt.Rectangle boundsXY, int channel) Create a new ImageData iterator to iterate data through the specified XY region and channel.
ImageDataIterator(IcyBufferedImage image, ROI roi) Deprecated. Use ImageDataIterator.ImageDataIterator(IcyBufferedImage, BooleanMask2D, int) instead. You can use the ROI.getBooleanMask2D(int, int, int, boolean) method to retrieve the boolean mask from the ROI.

Uses of IcyBufferedImage in icy.image.cache

Methods in icy.image.cache that return types with arguments of type IcyBufferedImage

Modifier and Type	Method and Description
static java.util.Map<IcyBufferedImage,java.lang.Object>	ImageCache.get(java.util.Collection<IcyBufferedImage> keys) Get all data array from cache from a given Collection of IcyBufferedImage
static java.util.Collection<IcyBufferedImage>	ImageCache.getAllKeys() Get all data IcyBufferedImage in the cache

Methods in icy.image.cache with parameters of type IcyBufferedImage

Modifier and Type	Method and Description
static java.lang.Object	ImageCache.get(IcyBufferedImage key) Get the corresponding data array (2D native array) from cache from a given IcyBufferedImage
static boolean	ImageCache.isInCache(IcyBufferedImage image)
static boolean	ImageCache.isOnDiskCache(IcyBufferedImage image)
static boolean	ImageCache.isOnMemoryCache(IcyBufferedImage image)
static void	ImageCache.remove(IcyBufferedImage key) Remove an object from the cache from its key
static void	ImageCache.set(IcyBufferedImage key, java.lang.Object object, boolean eternal) Put the specified data array (2D native array) into cache with its associated key

Method parameters in icy.image.cache with type arguments of type IcyBufferedImage

Modifier and Type	Method and Description
static java.util.Map<IcyBufferedImage,java.lang.Object>	ImageCache.get(java.util.Collection<IcyBufferedImage> keys) Get all data array from cache from a given Collection of IcyBufferedImage

Uses of IcyBufferedImage in icy.imagej

Methods in icy.imagej that return IcyBufferedImage

Modifier and Type	Method and Description
static IcyBufferedImage	ImageJUtil.convertToIcyBufferedImage(ij.ImagePlus image, int z, int t) Convert the ImageJ ImagePlus image at position [Z,T] into an Icy image
static IcyBufferedImage	ImageJUtil.convertToIcyBufferedImage(ij.ImagePlus image, int z, int t, int sizeX, int sizeY, int sizeC, int type, boolean signed16) Convert the ImageJ ImagePlus image at position [Z,T] into an Icy image

Uses of IcyBufferedImage in icy.plugin.abstract_

Methods in icy.plugin.abstract_ that return IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	Plugin.getActiveImage()
IcyBufferedImage	Plugin.getFocusedImage() Deprecated. Use Plugin.getActiveImage() instead
IcyBufferedImage	PluginSequenceIdImporter.getImage(int z, int t)
IcyBufferedImage	PluginSequenceFileImporter.getImage(int z, int t)
IcyBufferedImage	PluginSequenceIdImporter.getImage(int series, int z, int t)
IcyBufferedImage	PluginSequenceFileImporter.getImage(int series, int z, int t)
IcyBufferedImage	PluginSequenceIdImporter.getImage(int series, int resolution, int z, int t)
IcyBufferedImage	PluginSequenceFileImporter.getImage(int series, int resolution, int z, int t)
IcyBufferedImage	PluginSequenceIdImporter.getImage(int series, int resolution, int z, int t, int c)
IcyBufferedImage	PluginSequenceFileImporter.getImage(int series, int resolution, int z, int t, int c)
IcyBufferedImage	PluginSequenceIdImporter.getImage(int series, int resolution, java.awt.Rectangle rectangle, int z, int t)
IcyBufferedImage	PluginSequenceFileImporter.getImage(int series, int resolution, java.awt.Rectangle rectangle, int z, int t)
IcyBufferedImage	PluginSequenceIdImporter.getThumbnail(int series)
IcyBufferedImage	PluginSequenceFileImporter.getThumbnail(int series)

Uses of IcyBufferedImage in icy.plugin.interface_

Methods in icy.plugin.interface_ that return IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	PluginImageFilter.processImage(IcyBufferedImage icyBufferedImage) Deprecated.

Methods in icy.plugin.interface_ with parameters of type IcyBufferedImage

Modifier and Type	Method and Description
IcyBufferedImage	PluginImageFilter.processImage(IcyBufferedImage icyBufferedImage) Deprecated.

Uses of IcyBufferedImage in icy.sequence

Methods in icy.sequence that return IcyBufferedImage

Modifier and Type	Method and Description
static IcyBufferedImage	SequenceUtil.AddZHelper.getExtendedImage(Sequence sequence, int t, int z, int insertPosition, int numInsert, int copyLast)
static IcyBufferedImage	SequenceUtil.AddTHelper.getExtendedImage(Sequence sequence, int t, int z, int insertPosition, int numInsert, int copyLast)
IcyBufferedImage	VolumetricImage.getFirstImage() Return the first image
IcyBufferedImage	Sequence.getFirstImage() Returns the first image of first VolumetricImage
IcyBufferedImage	VolumetricImage.getFirstNonNullImage()
IcyBufferedImage	Sequence.getFirstNonNullImage() Returns the first non null image if exist
IcyBufferedImage	VolumetricImage.getImage(int z) Return image at position z
IcyBufferedImage	Sequence.getImage(int t, int z) Returns image at time t and depth z
IcyBufferedImage	Sequence.getImage(int t, int z, boolean loadData) Returns image at time t and depth z.
IcyBufferedImage	Sequence.getImage(int t, int z, int c) Returns a single component image corresponding to the component c of the image at time t and depth z.
static IcyBufferedImage	SequenceUtil.MergeCHelper.getImage(Sequence[] sequences, int[] channels, int sizeX, int sizeY, int t, int z, boolean fillEmpty, boolean rescale)
static IcyBufferedImage	SequenceUtil.MergeZHelper.getImage(Sequence[] sequences, int sizeX, int sizeY, int sizeC, int t, int z, boolean interlaced, boolean fillEmpty, boolean rescale)
static IcyBufferedImage	SequenceUtil.MergeTHelper.getImage(Sequence[] sequences, int sizeX, int sizeY, int sizeC, int t, int z, boolean interlaced, boolean fillEmpty, boolean rescale)
static IcyBufferedImage	SequenceUtil.AdjustZTHelper.getImage(Sequence sequence, int t, int z, int newSizeZ, int newSizeT, boolean reverseOrder)
IcyBufferedImage	VolumetricImage.getLastImage() Return the last image
IcyBufferedImage	Sequence.getLastImage() Returns the last image of last VolumetricImage
IcyBufferedImage	Sequence.getLastImage(int t) Returns the last image of VolumetricImage[t]

Methods in icy.sequence that return types with arguments of type IcyBufferedImage

Modifier and Type	Method and Description
java.util.ArrayList<IcyBufferedImage>	VolumetricImage.getAllImage() Return all images of volume image
java.util.ArrayList<IcyBufferedImage>	Sequence.getAllImage() Returns all images of sequence in [ZT] order: T=0 Z=0 T=0 Z=1 T=0 Z=2 ...
java.util.TreeMap<java.lang.Integer,IcyBufferedImage>	VolumetricImage.getImages() Return all images of volume image as TreeMap (contains z position)
java.util.ArrayList<IcyBufferedImage>	Sequence.getImages(int t) Returns all images at specified t position

Methods in icy.sequence with parameters of type IcyBufferedImage

Modifier and Type	Method and Description
static ome.xml.meta.OMEXMLMetadata	MetaDataUtil.generateMetaData(IcyBufferedImage image, boolean separateChannel) Generates Meta Data for the given BufferedImage.
boolean	Sequence.isCompatible(IcyBufferedImage image) Test if the specified image is compatible with current loaded images in sequence
void	Sequence.onImageAdded(IcyBufferedImage image) Do common job on "image add" here
void	Sequence.onImageRemoved(IcyBufferedImage image) Do common job on "image remove" here
void	Sequence.onImageReplaced(IcyBufferedImage oldImage, IcyBufferedImage newImage) Do common job on "image replaced" here
void	VolumetricImage.setImage(int z, IcyBufferedImage image) Set an image at the specified position

Constructors in icy.sequence with parameters of type IcyBufferedImage

Constructor and Description
Sequence(IcyBufferedImage image) Creates a sequence containing the specified image.
Sequence(java.lang.String name, IcyBufferedImage image) Creates a sequence with specified name and containing the specified image

Uses of IcyBufferedImage in icy.util

Methods in icy.util with parameters of type IcyBufferedImage

Modifier and Type	Method and Description
static ome.xml.meta.OMEXMLMetadata	OMEUtil.generateMetaData(IcyBufferedImage image, boolean separateChannel) Deprecated. Use MetaDataUtil.generateMetaData(IcyBufferedImage, boolean) instead.

Uses of IcyBufferedImage in plugins.kernel.importer

Methods in plugins.kernel.importer that return IcyBufferedImage

Modifier and Type	Method and Description
static IcyBufferedImage	LociImporterPlugin.getImage(loci.formats.IFormatReader reader, java.awt.Rectangle rect, int z, int t) Load the image located at (Z, T) position from the specified IFormatReader and return it as an IcyBufferedImage.
static IcyBufferedImage	LociImporterPlugin.getImage(loci.formats.IFormatReader reader, java.awt.Rectangle rect, int z, int t, int c) Load a single channel sub image at (Z, T, C) position from the specified IFormatReader and returns it as an IcyBufferedImage.
static IcyBufferedImage	LociImporterPlugin.getImage(loci.formats.IFormatReader reader, java.awt.Rectangle rect, int z, int t, int c, int downScaleLevel) Load a single channel sub image at (Z, T, C) position from the specified IFormatReader and returns it as an IcyBufferedImage.
IcyBufferedImage	LociImporterPlugin.getImage(int series, int resolution, java.awt.Rectangle rectangle, int z, int t, int c)
IcyBufferedImage	LociImporterPlugin.getImageByTile(int series, int resolution, java.awt.Rectangle region, int z, int t, int c, int tileW, int tileH, ProgressListener listener)
static IcyBufferedImage	LociImporterPlugin.getImageCompatible(loci.formats.IFormatReader reader, int z, int t) Load the image located at (Z, T) position from the specified IFormatReader and return it as an IcyBufferedImage (compatible and slower method).
static IcyBufferedImage	LociImporterPlugin.getThumbnail(loci.formats.IFormatReader reader, int z, int t) Load a thumbnail version of the image located at (Z, T) position from the specified IFormatReader and returns it as an IcyBufferedImage.
static IcyBufferedImage	LociImporterPlugin.getThumbnail(loci.formats.IFormatReader reader, int z, int t, int c) Load a thumbnail version of the image located at (Z, T, C) position from the specified IFormatReader and returns it as an IcyBufferedImage.
IcyBufferedImage	LociImporterPlugin.getThumbnail(int series)
static IcyBufferedImage	LociImporterPlugin.getThumbnailCompatible(loci.formats.IFormatReader reader, int z, int t) Load a thumbnail version of the image located at (Z, T) position from the specified IFormatReader and returns it as an IcyBufferedImage.
static IcyBufferedImage	LociImporterPlugin.getThumbnailCompatible(loci.formats.IFormatReader reader, int z, int t, int c) Load a thumbnail version of the image located at (Z, T, C) position from the specified IFormatReader and returns it as an IcyBufferedImage.