Call IJ Macro

Short Description

Versions

• Version 1 • Released on: 2013-03-08 17:28:37
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  Description:

  initial version

  importClass(Packages.plugins.tprovoost.scripteditor.uitools.filedialogs.FileDialog)
  importClass(Packages.icy.sequence.SequenceUtil)
  importClass(Packages.icy.imagej.ImageJUtil)
  importClass(Packages.ij.IJ)
  
  // the path to the file
  file = FileDialog.open()
  if (file == null) throw "No File selected"
  
  // Get the focused sequence, test if null or not.
  seq = getSequence()
  if (seq == null) throw "No sequence opened"
  
  // Convert the sequence into an understanble object for ImageJ
  imPlus = ImageJUtil.convertToImageJImage(seq, null)
  
  /*
   * Run the IJ Plugin
   */
  IJ.runMacroFile(file.getPath())
  
  // Convert the result back to a sequence
  seqResult = ImageJUtil.convertToIcySequence(imPlus, null)
  seqResult.setName(seq.getName() + " - IJ treated")
  
  // perform changes
  gui.addSequence(seqResult)