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Icy An open community platform for bioimage informatics

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Active Contours
3D elevation map
VTK 3D rendering
3D segmentation
Tracking 3D
Spot Detection
SODA
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  • 3-D
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Plugins
How to contribute to Icy?

All these features, right out of the box

Providing software resources to visualize, annotate and quantify bioimaging data

Plugins

Easily write, share, search and install any plugin from the community directly from Icy

Graphical Programming

With protocols you can graphically design the workflow of plugins and scripts to be executed

Script Editor

Easily write scripts in javascript or python with the integrated script editor

Cross-Platform

Works natively on Windows, Linux and MacOS (Java required).

Sharing

Rate and comment plugins, give support, write tutorials and articles about what you are doing with Icy

And more!

Interactive widgets, interface builder, OpenCL, 3D data visualization, workspaces.

Latest Resources

Plugin
30
Apr 2026

multiTools

by @Frederic Marion-Poll
Protocol
03
Mar 2026

Detection and colocalization of autophagic and lysosomal vesicles in muscle fibers

  • batch processing
  • colocalization
  • comptage
  • detector
  • fluorescence
  • Muscle
by @celine Malleval Loisel
Protocol
14
Jan 2026

Spot fluorescence and perinuclear enrichment

by @Thibault Lagache
Plugin
01
Feb 2025

multiSPOTS

by @Frederic Marion-Poll
Plugin
21
Jan 2025

Apache Commons IO

by @Thomas Musset

Upcoming Trainings & Events

Training
31
Oct 2017

Level 2: Protocols / Batch processing / Script (fr)

by @Fabrice de Chaumont
Training
31
Oct 2017

Level 1: Introduction a Icy (fr)

by @Fabrice de Chaumont
Training
07
Feb 2017

Level 2: Protocols & Scripts with Icy (fr)

by @Fabrice de Chaumont
Training
07
Feb 2017

Level 1: Introduction to Icy (fr)

by @Fabrice de Chaumont
Training
07
Dec 2015

Level 2: Protocol & Script (en)

by @Fabrice de Chaumont
View all
Icy is founded by
Institut Pasteur
France BioImaging
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Credits
Designed by Yhello
contact
Yhello is a digital creation agency based in Paris, created by former scientists passionate about the web.
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