Skip to content
  • Home
  • Resources
  • Support
  • Contributors
  • Get Involved
  • About
Search
Login Create Account
Filter by type
Filter by category
in Category: image process [8]
  • 3-D
  • 3D
  • 3D coordinates
  • alignment
  • basics
  • batch processing
  • Calcium
  • cell tracking
  • CLEM
  • colocalization
  • comptage
  • confocal
  • connected components
  • contribution
  • convolution
  • correlation
  • deconvolution
  • deformable registration
  • denoising
  • detection
  • detector
  • developer
  • displacements
  • distance map
  • export
  • ezplug
  • feature detection
  • feature matching
  • filtering
  • fluorescence
  • gui
  • headless
  • helper
  • HSV visualisation
  • image process
  • ImageJ
  • intensity
  • mask
  • maven
  • measurement
  • MHT
  • microscopy
  • monitoring
  • morphology
  • multiple hypothesis tracking
  • Muscle
  • non rigid registration
  • operator
  • optimization
  • otsu
  • plugin
  • point-spread function
  • projection
  • protocol
  • PSF
  • python
  • registration
  • release
  • Ripley's K function
  • roi
  • script
  • scripting
  • segmentation
  • sequence
  • smoothing
  • spatial distribution
  • spot
  • spot count
  • statistics
  • surface
  • synthetic
  • threshold
  • toolbox
  • tools
  • track processor
  • tracking
  • tutorial
  • warping
  • wavelet transform
  • wavelets
  • widefield
  • workbook
  • XLS output
Convert frame – time to channel example
Cells detection and tracking with Active Contour
var total_items = 8;

Leaf area counter

protocol
Giordano Basili Luciani

this protocols allow to calculate internal leaf area. first of all, the destination excel file need to be create in order to save results, than the la [..]

Cytokinetic bridge detector

plugin
Mikael BOULLE
Alexandre Dufour
Stephane Dallongeville
Mikael BOULLE
Alexandre Dufour
Stephane Dallongeville

This project was established to help biologists detect late cytokinetic bridges on static immunofluorescence images. Icy is an open source image proce [..]

metroloSPIM

plugin
Alexandre Dufour

Toolbox for light-sheet microscopy metrology.

DeltaT

protocol
Andrew McCall

Creates a new image sequence of size n-1 from the active sequence that shows the intensity changes between each pair of frames in the original sequenc [..]

clicy

plugin
Robert Haase

Bridging Icy and clij

SLIC Superpixels

plugin
Daniel Felipe González Obando

SLIC Plugin to compute superpixels on 8-bit RGB images

Potts Segmentation

plugin
Vasileios Angelopoulos

The plug-in is developed using a segmentation algorithm based on the Potts model. The user can segment an image, merge two segments or refine segments [..]

Protocols

plugin
Alexandre Dufour
Stephane Dallongeville
Alexandre Dufour
Stephane Dallongeville

Design your own bioimage analysis workflow, graphically, and automate it on many images (batch processing). No programming knowledge required! Protoc [..]

Welcome

Welcome to the Icy community support.

View Forum

Google Group

We’re migrating to a new Forum ⚡️, but if you need to access the old Google Group, please follow this link. All new topics should be opened here from now.

Latest Articles

  • Creating an Icy plugin with EzPlug
  • Creating blocks for Icy protocols
  • Installation instructions for Icy software
  • Code of Conduct
  • Icy cheat sheets
Icy is founded by
Institut Pasteur
France BioImaging
Resources
Plugins Protocols Scripts
Get Involved
Contributors Information Trainings Join Icy
Support
Forum Articles FAQ Ask for help
About
Aknowledgements Bioimage Analysis Contributors Privacy Policy
Credits
Designed by Yhello
contact
Yhello is a digital creation agency based in Paris, created by former scientists passionate about the web.
Loading login form...
Privacy and cookies

We use necessary cookies to run the site. Optional categories stay blocked unless you allow them.

Your browser privacy signal is active, so analytics and marketing remain disabled.

Privacy page

Manage cookie preferences

Necessary cookies are always active. Optional categories stay blocked until you allow them.

Your browser privacy signal is active, so analytics and marketing remain disabled.

Privacy page