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Dynamics Classifier (TrackProcessor)
EHCache 3 for Icy
var total_items = 7;

JEP – Java Embedded Python

plugin
Amandine Tournay

Jep embeds CPython in Java through JNI.

Code on Python through Java !

Cytokinetic bridge detector

plugin
Mikael BOULLE
Alexandre Dufour
Stephane Dallongeville
Mikael BOULLE
Alexandre Dufour
Stephane Dallongeville

This project was established to help biologists detect late cytokinetic bridges on static immunofluorescence images. Icy is an open source image proce [..]

Migrate your old Icy plugin to maven

post
Stephane Dallongeville
Amandine Tournay
Stephane Dallongeville
Amandine Tournay

This tutorial explains how to migrate your old Icy plugin project (Eclipse) to a Maven project using our template. It will guide you using a concrete example (converting the Intensity Projection plugin) through the followings steps: Pre-requisites Converting Eclipse project to Maven project Setup POM file Building the project Testing Pre-requisites As we use Maven […]

Elastic motion correction and concatenation (EMC2) of tracks

plugin
Thibault Lagache

EMC2 plugin & block(s) is designed for closing tracking gaps in single-particle tracking. It is particularly well-suited for monitoring single neu [..]

How to publish a plugin

post
Marion Louveaux
Stephane Dallongeville
Marion Louveaux
Stephane Dallongeville

In Icy, plugins are small modules containing one or several functionalities. Here you will find how to publish and share an Icy plugin on the Icy website in three steps: Create an account for each author of the plugin. Please indicate your real name and prefer one account per physical author rather than one account […]

clicy

plugin
Robert Haase

Bridging Icy and clij

Potts Segmentation

plugin
Vasileios Angelopoulos

The plug-in is developed using a segmentation algorithm based on the Potts model. The user can segment an image, merge two segments or refine segments [..]

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