Short Description

This script exports the ROI infos to an excel file. Here we just show it as an example for min, mean and max intensity for each ROI.

Versions

  • Version 1 • Released on: 2014-02-19 11:47:00
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    Description:

    initial version

    importClass(Packages.plugins.tprovoost.scripteditor.uitools.filedialogs.FileDialog)
importClass(Packages.plugins.tprovoost.scripteditor.uitools.userdialogs.Dialog)
importClass(Packages.icy.file.FileUtil)
importClass(Packages.icy.util.XLSUtil)
importClass(Packages.icy.roi.ROIUtil)

sequence = getSequence()

if ( sequence == null ) throw "No sequence opened."

println( sequence.getName() )

println( sequence.getSizeC() )

listROI = sequence.getROIs()

workbook = XLSUtil.createWorkbook( FileDialog.open() )

page = XLSUtil.createNewPage( workbook, "my result page")

for ( i = 0 ; i < listROI.size() ; i++ )
{
	roi = listROI.get( i )
	println ("------ " + roi.getName() )

	meanIntensity = ROIUtil.getMeanIntensity(sequence, roi)
	minIntensity = ROIUtil.getMinIntensity(sequence, roi)
	maxIntensity = ROIUtil.getMaxIntensity(sequence, roi)

	println( minIntensity + "t" + maxIntensity + "t" + meanIntensity)

	XLSUtil.setCellNumber( page , 0, i, minIntensity )
	XLSUtil.setCellNumber( page , 1, i, maxIntensity )
	XLSUtil.setCellNumber( page , 2, i, meanIntensity )

}

XLSUtil.saveAndClose(workbook)

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