Short Description

Set of block (for graphical programming with Protocols) to perform different operations on ROI (Region Of Interest).

Team: Bio Image Analysis
Institution: Institut Pasteur
Website: http://icy.bioimageanalysis.org/

Documentation

Bundle of blocks (Protocols) to perform different operations on ROI (Region Of Interest).

Supported operations:

  • Create rectangular ROI (2D, 3D, 4D or 5D)
  • Filter / sort / color from ROI descriptor
  • Perform boolean / logical operation between two set of ROI
  • Get / set ROI position
  • Get / set ROI size
  • Get / set ROI properties (name, color, opacity…)
  • Load ROI(s) from file
  • Save ROI(s) to file

 

One review on “ROI blocks

  1. Extremely useful plugin, just the "color" part has a bug, it doesn't save the color with the protocol - loading the protocol has all colors set back to the default value.

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Changelog

  • Version 1.4.0.0 • Released on: 2019-08-22 18:00:00
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    Description:

    * added new Color ROI block to color a group of ROI from a ROI descriptor and a given colormap (really useful !!).
    * added many static method so coloring / filtering / sorting / logical and boolean operations are easily usable from code.

  • Version 1.3.0.0 • Released on: 2019-06-26 15:00:00
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    Description:

    Added new "Logical Operation ROI" to perform logic operation between 2 set of ROIs (intersected, contained, not contained..)

  • Version 1.2.8.0 • Released on: 2019-02-14 16:55:44
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    Description:

    Added "ROI To Rectangle" bloc to convert ROI(s) to Rectangle type ROI(s)

  • Version 1.2.7.1 • Released on: 2019-02-07 12:58:34
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    Description:

    typo

  • Version 1.2.7.0 • Released on: 2019-02-07 12:54:26
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    Description:

    Added "ROI to point" and "ROI to ellipse" blocks

  • Version 1.2.6.0 • Released on: 2019-01-23 11:53:31
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    Description:

    Added "Scale Shape ROI" and "Scale2x ROI" blocks

  • Version 1.2.5.1 • Released on: 2018-03-01 10:45:32
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    Description:

    Fixed typo in "ROI To Mask" block

  • Version 1.2.5.0 • Released on: 2017-10-18 10:38:22
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    Description:

    Added new "Move ROI To Sequence".
    This block adjusts a set of ROIs coming from a source sequence for a destination sequence. ROIs are translated & scaled according to the origin position & resolution of both sequences.

  • Version 1.2.4.1 • Released on: 2017-07-06 18:08:45
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    Description:

    (much) faster ROI filtering and sorting processing.

  • Version 1.2.4.0 • Released on: 2017-06-06 17:05:23
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    Description:

    Added new blocks :
    - SortROI (sort ROIs on a specific descriptor)
    - SeparateROIComponents (separate connected components from ROI(s))

  • Version 1.2.3.0 • Released on: 2017-04-13 18:40:50
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    Description:

    Added new block "get ROI descriptor value"

  • Version 1.2.2.1 • Released on: 2017-04-13 18:40:20
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    Description:

    Added new block "get ROI descriptor value"

  • Version 1.2.2.0 • Released on: 2016-12-21 16:16:03
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    Description:

    Fixed ROI filter block.

  • Version 1.2.1.0 • Released on: 2016-12-02 16:36:39
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    Description:

    Fixed "filter ROI" block state loading.

  • Version 1.2.0.1 • Released on: 2016-11-16 18:48:52
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    Description:

    Added new ROI filter bloc allowing generic filtering on any descriptor.
    Note than in current Icy version (1.8.6.0) the descriptor list does not display correctly but that will be fixed with Icy 1.8.7.0 or superior.

  • Version 1.2.0.0 • Released on: 2016-07-13 16:54:07
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    Description:

    * added block to load / save ROI(s) from / to a file.
    * added block to specifically set ROI T/Z/C position

  • Version 1.1.7.0 • Released on: 2016-02-16 12:29:18
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    Description:

    Boolean operation does not return anymore empty ROI on intersection when ROI are not intersecting.

  • Version 1.1.6.0 • Released on: 2016-02-10 12:42:49
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    Description:

    fixed a typo with the 'Data type' field of 'Roi to Sequence' block.

  • Version 1.1.5.4 • Released on: 2016-01-13 16:48:42
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    Description:

    Better dataType field in RoiToSequence block.

  • Version 1.1.5.3 • Released on: 2016-01-13 16:39:37
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    Description:

    - added field 'dataType' to RoiToSequence block.

  • Version 1.1.5.2 • Released on: 2016-01-13 16:33:42
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    Description:

    fixed typo with "fillValue" field in RoiToSequence block.

  • Version 1.1.5.1 • Released on: 2016-01-13 16:31:50
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    Description:

    fixed typo in fill value field name.

  • Version 1.1.5.0 • Released on: 2016-01-13 16:01:27
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    Description:

    - added RoiToSequence block to the bundle (old RoiToSequence plugin become deprecated).
    - added "fill value" field to RoiToSequence block.

  • Version 1.1.4.1 • Released on: 2016-01-05 18:41:43
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    Description:

    added persistence for the global visible overlay (only work with a specific plugin)

  • Version 1.1.4.0 • Released on: 2016-01-04 13:11:32
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    Description:

    Added a new "create global visible overlay" block which take a list of overlay as input and create a new Overlay which affect globally the visible property of the given input overlay list.

  • Version 1.1.3.0 • Released on: 2015-10-23 11:20:18
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    Description:

    Better error handling for "Set ROI Name" block.

  • Version 1.1.2.1 • Released on: 2015-02-12 18:49:44
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    Description:

    minors refactoring.

  • Version 1.1.2.0 • Released on: 2015-02-12 18:21:47
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    Description:

    minor refactoring

  • Version 1.1.1.0 • Released on: 2015-02-12 17:56:48
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    Description:

    changed some default parameters values

  • Version 1.1.0.1 • Released on: 2015-02-12 16:50:47
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    Description:

    - added set ROI properties block
    - minors improvements
    - a bit of refactoring

  • Version 1.0.0.0 • Released on: 2015-02-12 15:55:50
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    Description:

    Fix version informations.

  • Version 0.0.1.0 • Released on: 2015-02-12 15:46:34
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