importClass(Packages.icy.sequence.Sequence)
importClass(Packages.icy.image.IcyBufferedImage)
importClass(Packages.icy.image.IcyBufferedImageUtil)
importClass(Packages.plugins.tprovoost.Microscopy.MicroManager.MicroManager)
// get acquired image containing ROIs
acquiredSeq = getSequence()
// get image type
dataType = acquiredSeq.getDataType_()
// get rois
rois = acquiredSeq.getROIs()
cropImages = []
// create result image
for(r = 0; r < rois.size(); r++)
{
roi = rois.get(r)
bnd = roi.getBounds5D()
img = new IcyBufferedImage(bnd.getSizeX(), bnd.getSizeY(), 1, dataType)
// store image
cropImages[r] = img
// create sequence
s = new Sequence(img)
// change sequence name
s.setName("image" + r + " - " + roi.getName())
// show it
gui.addSequence(s)
}
while(true)
{
// snap image
newImage = MicroManager.snapImage()
for(r = 0; r < rois.size(); r++)
{
roi = rois.get(r)
bnd = roi.getBounds5D().toRectangle2D().getBounds()
img = cropImages[r]
img.copyData(newImage, bnd, null)
}
// do processig here on cropped images
}
