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• Version 1 • Released on: 2018-03-19 19:15:15
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  initial version

  importClass(Packages.icy.sequence.Sequence) importClass(Packages.icy.image.IcyBufferedImage) importClass(Packages.icy.image.IcyBufferedImageUtil) importClass(Packages.plugins.tprovoost.Microscopy.MicroManager.MicroManager) // get acquired image containing ROIs acquiredSeq = getSequence() // get image type dataType = acquiredSeq.getDataType_() // get rois rois = acquiredSeq.getROIs() cropImages = [] // create result image for(r = 0; r < rois.size(); r++) { roi = rois.get(r) bnd = roi.getBounds5D() img = new IcyBufferedImage(bnd.getSizeX(), bnd.getSizeY(), 1, dataType) // store image cropImages[r] = img // create sequence s = new Sequence(img) // change sequence name s.setName("image" + r + " - " + roi.getName()) // show it gui.addSequence(s) } while(true) { // snap image newImage = MicroManager.snapImage() for(r = 0; r < rois.size(); r++) { roi = rois.get(r) bnd = roi.getBounds5D().toRectangle2D().getBounds() img = cropImages[r] img.copyData(newImage, bnd, null) } // do processig here on cropped images }

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  importClass(Packages.icy.sequence.Sequence) importClass(Packages.icy.image.IcyBufferedImage) importClass(Packages.icy.image.IcyBufferedImageUtil) importClass(Packages.plugins.tprovoost.Microscopy.MicroManager.MicroManager)   // get acquired image containing ROIs acquiredSeq = getSequence() // get image type dataType = acquiredSeq.getDataType_() // get rois rois = acquiredSeq.getROIs()   cropImages = []   // create result image for(r = 0; r < rois.size(); r++) { roi = rois.get(r) bnd = roi.getBounds5D() img = new IcyBufferedImage(bnd.getSizeX(), bnd.getSizeY(), 1, dataType)   // store image cropImages[r] = img   // create sequence s = new Sequence(img) // change sequence name s.setName("image" + r + " - " + roi.getName()) // show it gui.addSequence(s) }     while(true) { // snap image newImage = MicroManager.snapImage()   for(r = 0; r < rois.size(); r++) { roi = rois.get(r) bnd = roi.getBounds5D().toRectangle2D().getBounds() img = cropImages[r] img.copyData(newImage, bnd, null) }   // do processig here on cropped images }