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• Version 2 • Released on: 2014-08-07 15:54:30
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  Description:

  Added min / max intensity information.

  importClass(Packages.icy.file.FileUtil) importClass(Packages.icy.util.XLSUtil) importClass(Packages.icy.roi.ROIUtil) sequence = getSequence() if (sequence != null) { roi = sequence.getSelectedROI() if (roi != null) { // create new excel file xls = XLSUtil.createWorkbook(FileUtil.setExtension(sequence.getFilename(), ".xls")) // create a new page xlsPage = XLSUtil.createNewPage(xls, roi.getName()) // write header XLSUtil.setCellString(xlsPage, 0, 0, "T position") XLSUtil.setCellString(xlsPage, 2, 0, "Min intensity") XLSUtil.setCellString(xlsPage, 3, 0, "Mean intensity") XLSUtil.setCellString(xlsPage, 4, 0, "Max intensity") for(t = 0; t < sequence.getSizeT(); t++) { // compute intensities for this frame min = ROIUtil.getMinIntensity(sequence, roi, -1, t, -1) mean = ROIUtil.getMeanIntensity(sequence, roi, -1, t, -1) max = ROIUtil.getMaxIntensity(sequence, roi, -1, t, -1) // write value XLSUtil.setCellNumber(xlsPage, 0, t + 2, t) XLSUtil.setCellNumber(xlsPage, 2, t + 2, min) XLSUtil.setCellNumber(xlsPage, 3, t + 2, mean) XLSUtil.setCellNumber(xlsPage, 4, t + 2, max) } // save excel file XLSUtil.saveAndClose(xls) } }

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  importClass(Packages.icy.file.FileUtil) importClass(Packages.icy.util.XLSUtil) importClass(Packages.icy.roi.ROIUtil)   sequence = getSequence()   if (sequence != null) { roi = sequence.getSelectedROI()   if (roi != null) { // create new excel file xls = XLSUtil.createWorkbook(FileUtil.setExtension(sequence.getFilename(), ".xls")) // create a new page xlsPage = XLSUtil.createNewPage(xls, roi.getName())   // write header XLSUtil.setCellString(xlsPage, 0, 0, "T position") XLSUtil.setCellString(xlsPage, 2, 0, "Min intensity") XLSUtil.setCellString(xlsPage, 3, 0, "Mean intensity") XLSUtil.setCellString(xlsPage, 4, 0, "Max intensity") for(t = 0; t < sequence.getSizeT(); t++) { // compute intensities for this frame min = ROIUtil.getMinIntensity(sequence, roi, -1, t, -1) mean = ROIUtil.getMeanIntensity(sequence, roi, -1, t, -1) max = ROIUtil.getMaxIntensity(sequence, roi, -1, t, -1) // write value XLSUtil.setCellNumber(xlsPage, 0, t + 2, t) XLSUtil.setCellNumber(xlsPage, 2, t + 2, min) XLSUtil.setCellNumber(xlsPage, 3, t + 2, mean) XLSUtil.setCellNumber(xlsPage, 4, t + 2, max) }   // save excel file XLSUtil.saveAndClose(xls) } }

• Version 1 • Released on: 2014-08-07 15:50:45
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  Description:

  initial version

  importClass(Packages.icy.file.FileUtil) importClass(Packages.icy.util.XLSUtil) importClass(Packages.icy.roi.ROIUtil) sequence = getSequence() if (sequence != null) { roi = sequence.getSelectedROI() if (roi != null) { // create new excel file xls = XLSUtil.createWorkbook(FileUtil.setExtension(sequence.getFilename(), ".xls")) // create a new page xlsPage = XLSUtil.createNewPage(xls, roi.getName()) // write header XLSUtil.setCellString(xlsPage, 0, 0, "T position") XLSUtil.setCellString(xlsPage, 1, 0, "Mean intensity") for(t = 0; t < sequence.getSizeT(); t++) { // compute mean intensity for this frame d = ROIUtil.getMeanIntensity(sequence, roi, -1, t, -1) // write value XLSUtil.setCellNumber(xlsPage, 0, t + 2, t) XLSUtil.setCellNumber(xlsPage, 1, t + 2, d) } // save excel file XLSUtil.saveAndClose(xls) } }

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  importClass(Packages.icy.file.FileUtil) importClass(Packages.icy.util.XLSUtil) importClass(Packages.icy.roi.ROIUtil)   sequence = getSequence()   if (sequence != null) { roi = sequence.getSelectedROI()   if (roi != null) { // create new excel file xls = XLSUtil.createWorkbook(FileUtil.setExtension(sequence.getFilename(), ".xls")) // create a new page xlsPage = XLSUtil.createNewPage(xls, roi.getName())   // write header XLSUtil.setCellString(xlsPage, 0, 0, "T position") XLSUtil.setCellString(xlsPage, 1, 0, "Mean intensity") for(t = 0; t < sequence.getSizeT(); t++) { // compute mean intensity for this frame d = ROIUtil.getMeanIntensity(sequence, roi, -1, t, -1) // write value XLSUtil.setCellNumber(xlsPage, 0, t + 2, t) XLSUtil.setCellNumber(xlsPage, 1, t + 2, d) }   // save excel file XLSUtil.saveAndClose(xls) } }