Stefan Fischer October 27, 2019 at 8:06 pm
I was testing the Plugin “Potts Segmentation” today and found it quite valuable for one of my projects. Everything works fine so far on single images, but I need to run it on multiple images or on a image stack. If I run it on a tiff stack, it only takes the first slice of the stack. The plugin is not included in the blocks in the Protocols editor, thus I can not loop it through a folder. Any ideas on how to get it run on multiple images?
Thanks for your help,
StefanStefan Fischer October 29, 2019 at 10:28 am
thanks for your answer, I did exactly that in parallel. I just wanted to make sure that I am not missing a possibility in ICY and will post any information / solution that I receive from the EPFL group back into this post here to make it visible for everybody.
StefanStephane Dallongeville October 29, 2019 at 12:38 pm
Thanks, that would be really useful indeed !
– StephaneStefan Fischer November 12, 2019 at 8:33 pm
I now received the answer from the author of the plugin that a change within the plugin to support image stacks (or multiple images) would require a change in the core of the procedure, which would be a quite demanding task. The author therefore proposed to use the plugin as is instead and loop it through a folder of images using the protocols editor. The question would then only be how can it be made available in the blocks (where it is not yet to be found)? I was told that this is not controlled by the plugin developers, but centrally by Icy.
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