Icy Version 1.5.3.1
Java(TM) SE Runtime Environment 1.8.0_11-b12 (64 bit)
Running on Windows 7 6.1 (amd64)
Max java memory : 14.1 GB

Plugin Simple Operations 1.2.0.1

Dependances:
Plugin EzPlug SDK 3.6.4.0 installed
Plugin Protocols SDK 4.1.2.0 installed
Plugin Protocols 2.1.1.0 installed

Email: vgluczak@gmail.com
Comment:
I am trying to use the manual thresholder to create a binary mask and I found the output is a mask that looks like the areas of my image that I want to keep, except the mask is inverted (values corresponding to my cell are 0 and backgroun is 1). This will not allow me to multiply the mask by my image. However, if I invert the mask, it will work fine. Within the Protocols editor, I duplicate my image using “sequence duplicate” and feed this through “thresholder”. From there, the binary output goes to “Simple Operations input 1” and I want to send the output to “Operation binary>multiply”. I received an error because “Simple operations” is requiring that another image is selected for “input 2”.

java.lang.ArrayIndexOutOfBoundsException: -15
at java.awt.image.DataBufferUShort.getData(Unknown Source)
at icy.image.IcyBufferedImage.getDataXYAsShort(IcyBufferedImage.java:1921)
at icy.image.IcyBufferedImage.getDataXY(IcyBufferedImage.java:1686)
at icy.sequence.Sequence.getDataXY(Sequence.java:3125)
at plugins.spop.simpleoperations.SimpleOperations.operation_3D(SimpleOperations.java:152)
at plugins.spop.simpleoperations.SimpleOperations.execute(SimpleOperations.java:110)
at plugins.adufour.ezplug.EzPlug.run(EzPlug.java:424)
at plugins.adufour.blocks.lang.BlockDescriptor.run(BlockDescriptor.java:466)
at plugins.adufour.blocks.lang.WorkFlow.run(WorkFlow.java:700)
at plugins.adufour.blocks.lang.BlockDescriptor.run(BlockDescriptor.java:466)
at java.lang.Thread.run(Unknown Source)