Time and Z binning viewer Nicolas Chenouard Bin data along the time and z dimensions. Hello Created on: 08 Apr 2019 No reviews Modified: 23 Apr 2020
Batch Spot Tracking with Auto Parameter Estimation Nicolas Chenouard Use the Spot Detector and Spot Tracking plugin in a batch way (multiple movies directly loaded from a local location). [..] Created on: 28 Oct 2015 No reviews Modified: 28 Oct 2015
Isotropic Wavelet transform Nicolas Chenouard Isotropic wavelets transform for 2D images. The plugin provides a multiscale representation of 2D images without directi [..] Created on: 25 May 2014 1 review Modified: 27 May 2021
Edge preserving denoising and smoothing Nicolas Chenouard This software smooth and denoise images while preserving sharp edges. The method relies on the Total Variation criterion [..] Created on: 20 May 2014 1 review Modified: 22 May 2014
Linear Programming Nicolas Chenouard A open-source utility library for linear programming in Java with the simplex algorithm. Problems are of the type: min/m [..] Created on: 22 Apr 2014 No reviews Modified: 27 May 2021
Spot Detection Import and Export Nicolas Chenouard Allows one to import spatio-temporal detections from a text file and also to export them. The type of detection objects [..] Created on: 16 Dec 2013 No reviews Modified: 16 Dec 2013
KymographTracker Nicolas Chenouard This plugin allows the extraction of the kymograph representation of pixel intensity evolution through time and along a [..] Created on: 16 Sep 2013 2 reviews Modified: 03 Sep 2021
Detect spot and change parameter along time with batch input and output Nicolas Chenouard This script is a modification of the script "Detect spot and change parameter along time" but it is using batch inputs a [..] Created on: 03 Apr 2013 No reviews Modified: 03 Apr 2013
ROI Intensity Evolution Nicolas Chenouard Stephane Dallongeville Nicolas Chenouard Stephane Dallongeville Compute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed autom [..] Created on: 21 Nov 2012 4 reviews Modified: 27 May 2021
Track Processor Intensity Profile Nicolas Chenouard A TrackProcessor that allows the user to monitor, visualize, and export, the intensity profile of tracks in time lapse s [..] Created on: 03 Nov 2012 3 reviews Modified: 27 May 2021
Active Cells 3D Ricard Delgado-Gonzalo Virginie Nicolas Chenouard Biomedical Imaging Group Ricard Delgado-Gonzalo Virginie Nicolas Chenouard Biomedical Imaging Group This plug-in implements fast active surfaces for 3D image segmentation. Their representation in terms of spline surfaces [..] Created on: 02 Nov 2012 2 reviews Modified: 15 May 2019
Active Cells Biomedical Imaging Group Ricard Delgado-Gonzalo Nicolas Chenouard Virginie Biomedical Imaging Group Ricard Delgado-Gonzalo Nicolas Chenouard Virginie This plug-in implements fast active contours for image segmentation. Their representation in terms of spline curves allo [..] Created on: 12 Sep 2012 4 reviews Modified: 17 Jul 2018
Active Cells SDK Biomedical Imaging Group Ricard Delgado-Gonzalo Nicolas Chenouard Virginie Biomedical Imaging Group Ricard Delgado-Gonzalo Nicolas Chenouard Virginie This is an icy package that encapsulates tools to design and implement parametric active contours. The package provides [..] Created on: 12 Sep 2012 1 review Modified: 30 May 2015
Tracking Performance Measures Nicolas Chenouard Fabrice de Chaumont Nicolas Chenouard Fabrice de Chaumont TrackProcessor for the TrackManager plugin that allows computing several measures of tracking performance. It proceeds [..] Created on: 03 Feb 2012 No reviews Modified: 16 Apr 2014
ISBI Challenge Tracks Importer Nicolas Chenouard Fabrice de Chaumont Nicolas Chenouard Fabrice de Chaumont TrackProcessor for the TrackManager plugin that allows importing/exporting tracks. Input and output files are in the .xm [..] Created on: 03 Feb 2012 No reviews Modified: 07 Aug 2013
Particle tracking benchmark generator Nicolas Chenouard Provides easy-to-use yet powerful tools to automatically create realistic synthetic image sequences of fluorescent parti [..] Created on: 01 Apr 2011 1 review Modified: 27 May 2021
Spot Tracking Nicolas Chenouard This plugin ships automated methods for extracting trajectories of multiples objects in a sequence of 2D or 3D images. U [..] Created on: 25 Mar 2011 6 reviews Modified: 17 Oct 2023
Spot detection utilities Nicolas Chenouard Fabrice de Chaumont Nicolas Chenouard Fabrice de Chaumont A set of classes and functions which can be used by plugins performing spot detection and spot tracking. Created on: 25 Mar 2011 No reviews Modified: 22 Sep 2021
