Merge AxioVision channels

Short Description

Versions

• Version 1 • Released on: 2016-01-29 16:06:30
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  Description:

  initial version

  importClass(Packages.icy.file.Saver)
  importClass(Packages.icy.sequence.SequenceUtil)
  importClass(Packages.icy.sequence.Sequence)
  importClass(Packages.icy.file.Loader)
  importClass(Packages.icy.file.FileUtil)
  importClass(Packages.java.io.File)
  importClass(Packages.plugins.tprovoost.scripteditor.uitools.filedialogs.FileDialog)
  
  // select input folder
  inputFolder = FileDialog.openFolder()
  // cancelled
  if (inputFolder == null) throw "Cancelled..."
  
  // retrieve the sub-folders
  paths = FileUtil.getFiles(inputFolder, null, false, true, false);
  
  for(i = 0; i < paths.length; i++)
  {
  	// paths[i] = "/.../0025/
  	if (!FileUtil.isDirectory(paths[i])) continue
  
  	dataName = FileUtil.getFileName(paths[i]); // => 0025
  	println("Processing dataset " + dataName)
  
  	c1 = paths[i] + File.separator + dataName + "_c1.TIF"
  	c2 = paths[i] + File.separator + dataName + "_c2.TIF"
  	c3 = paths[i] + File.separator + dataName + "_c3.TIF"
  
  	channels = []
  	channels[0] = Loader.loadSequence(c1, 0, false)	
  	channels[1] = Loader.loadSequence(c2, 0, false)	
  	channels[2] = Loader.loadSequence(c3, 0, false)	
  
  	merge = SequenceUtil.concatC(channels)
  	newFile = inputFolder + File.separator + dataName + ".tif"
  	Saver.save(merge, new File(newFile));
  }
  println("done.")