This java script show how to perform a small Z-Stack acquisition trough Micro-Manager.
WARNING: You need to start Micro-Manager for Icy plugin before executing the script.
importClass(Packages.icy.sequence.Sequence)
importClass(Packages.plugins.tprovoost.Microscopy.MicroManager.MicroManager)
importClass(Packages.plugins.tprovoost.Microscopy.MicroManager.tools.StageMover)
z = 0
// create the result sequence
sequence = new Sequence()
// move to position (5, 5, 5)
StageMover.moveXYAbsolute(5, 5)
StageMover.moveZAbsolute(5)
// acquire 1 image
image = MicroManager.snapImage()
// set it in resulting sequence at position 0
sequence.setImage(0, z++, image)
// shift microscope Z position by 10
StageMover.moveZRelative(10)
// acquire 1 image
image = MicroManager.snapImage()
// set it in resulting sequence at position 0
sequence.setImage(0, z++, image)
// shift microscope Z position by 10
StageMover.moveZRelative(10)
// acquire last image
image = MicroManager.snapImage()
// set it in resulting sequence at position 0
sequence.setImage(0, z, image)
// show the sequence in Icy
gui.addSequence(sequence)
