Protocol

Detection and Tracking of neurons with EMC2

Publication ID: ICY-77862

Short Description

This protocol is designed to track neurons in calcium imaging of behaving animal.

It contains a step of spot detection (wavelet Spot detector), followed by Bayesian tracking (eMHT Spot tracking) and gap closing (EMC2 block).

Team: BioImage Analysis Unit
Institution: Institut Pasteur
Website: https://research.pasteur.fr/fr/team/bioimage-analysis/preprint: https://www.biorxiv.org/content/10.1101/2020.06.22.165696v1.abstract

Documentation

Please refer to the documentation of

Spot detector http://icy.bioimageanalysis.org/plugin/spot-detector/

Spot tracking http://icy.bioimageanalysis.org/plugin/spot-tracking/

and

EMC2 http://icy.bioimageanalysis.org/plugin/elastic-motion-correction-concatenation-emc2-of-tracks/

for more details

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Changelog

  • Version 1 • Released on: 2020-07-01 00:00:00
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