Generate a random colormap for the current active image.
Convert ROI(s) to labeled image. This script basically iterate over all the ROIs of the current active image and will p [..]
This script take ROI(s) from an input image and create cropped image(s) from it / them then continuously acquire and update crops.
This small script export all contained pixel (position and value) into a CSV file. Warning: this script may require a lot of memory to run !
This java script show how to perform a timelaps (20 frames) and Z-Stack acquisition trough Micro-Manager and applying au [..]
This java script show how to perform a small Z-Stack acquisition trough Micro-Manager. WARNING: You need to start Mic [..]
This simple example show how to perform a single image acquisition with Micro-Manager for Icy from the java script. W [..]
A small script to synchronize all LUT (color map and histogram) all of opened images from the current active view.
This script will iterate through all ROIs from the active Sequence and create for each ROI a new fixed size Rectangle RO [..]
Take an input folder containing several XLS files and merge them together while adding a new column containing XLS file name (presumably image name).
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This script asks the user for an experiment folder produced by Axiovision and will create a multi-channel tiff file from the separate channel files.
Use the Spot Detector and Spot Tracking plugin in a batch way (multiple movies directly loaded from a local location). [..]
This script illustrates how to adjust (some of) the camera parameters in a 3D VTK viewer
Performs a binary threshold using KMeans on an image smoothened with a Gaussian filter (kernel 3x3). Similar to the protocol tutorial (without ROIs)
This script converts the ROIs of the active Sequence in a set of detection (DetectionResults) and export it in the swimm [..]
Here is what this script does from an input image: - apply a gaussian filter to improve the segmentation - do KMeans [..]
This script compute and exports the mean intensity and the standard deviation for a complete folder of image into a sing [..]
This script, measures the Mean Intensity in each ROIs in a GrayScale. you Must Open a picture file, select your ROIs, s [..]
This script takes the current active sequence and loop over its region of interest. For each ROI, it displays the num [..]
Export the min / mean / max intensity of the selected ROI of active sequence over time in an excel file. The excel file [..]
Move all selected ROIs together
This script allow you to export all pixels values which are contained in ROI(s) into a excel file. Process is done so c [..]
This script allow you to export all pixels values which are contained in the ROI(s) into a excel file.
This script will convert each sequence in a .lei/.lif file in individual Tif file. Convert sequences are recorded in the same directory under /result
Simple example using loop roi and excel output
This script exports the ROI infos to an excel file. Here we just show it as an example for min, mean and max intensity for each ROI.
for test purposes only
Crop a sequence and copy the source ROI in the cropped sequence.
Rename all ROIs of the active sequence