active contour goes out of image bounds

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  • deborakeller0@gmail.com

    this is a first for me but active contours creates ROIs outside of hte image bounds…

    https://cloud.biotoul.fr/index.php/f/106499

    I also reported several bugs with active contour.. might this be the problem?

    Cheers

     

    Debbi

     

    deborakeller0@gmail.com

    he following error is reported only on first occurence :
    org.pushingpixels.substance.api.UiThreadingViolationException: State tracking must be done on Event Dispatch Thread
    at org.pushingpixels.substance.internal.utils.SubstanceCoreUtilities.testThreadingViolation(SubstanceCoreUtilities.java:2117)
    at org.pushingpixels.substance.internal.animation.StateTransitionTracker$ModelStateInfo.clear(StateTransitionTracker.java:171)
    at org.pushingpixels.substance.internal.animation.StateTransitionTracker.onModelStateChanged(StateTransitionTracker.java:337)
    at org.pushingpixels.substance.internal.animation.StateTransitionTracker$4.stateChanged(StateTransitionTracker.java:262)
    at javax.swing.DefaultButtonModel.fireStateChanged(DefaultButtonModel.java:349)
    at javax.swing.JToggleButton$ToggleButtonModel.setSelected(JToggleButton.java:269)
    at javax.swing.AbstractButton.setSelected(AbstractButton.java:348)
    at plugins.adufour.roi.ROIMeasures$MeasureSelector.loadParameters(ROIMeasures.java:1295)
    at plugins.adufour.roi.ROIMeasures$MeasureSelector.valueChanged(ROIMeasures.java:1363)
    at plugins.adufour.roi.ROIMeasures$MeasureSelector.valueChanged(ROIMeasures.java:1)
    at plugins.adufour.vars.lang.Var.fireVariableChanged(Var.java:328)
    at plugins.adufour.vars.lang.Var.setValue(Var.java:791)
    at plugins.adufour.vars.lang.Var.loadFromXML(Var.java:530)
    at plugins.adufour.blocks.util.BlocksML.loadWorkFlow_V4(BlocksML.java:1430)
    at plugins.adufour.blocks.util.BlocksML.loadWorkFlow_V4(BlocksML.java:1306)
    at plugins.adufour.blocks.util.BlocksML.loadWorkFlow(BlocksML.java:773)
    at plugins.adufour.protocols.gui.ProtocolPanel.loadWorkFlow(ProtocolPanel.java:454)
    at plugins.adufour.protocols.gui.MainFrame$2.run(MainFrame.java:597)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:748)

    Alexandre Dufour

    Hi Debbi,

    FYI your link points to a protected page, so hard to see what’s going wrong.

    Anyways, could you send a screenshot of the parameters you used to get there?

    deborakeller0@gmail.com

     

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