Skip to content
  • Home
  • Resources
  • Support
  • Contributors
  • Get Involved
  • About
Search
Login
Create Account

Filter by type
Plugin Script Protocol FAQ Forum Topic Article
Filter by category
3-D3D3D coordinatesalignmentbasicsbatch processingCalciumcell trackingCLEMcolocalizationcomptageconfocalconnected componentscontributionconvolutioncorrelationdeconvolutiondeformable registrationdenoisingdetectiondetectordeveloperdisplacementsdistance mapexportezplugfeature detectionfeature matchingfilteringfluorescenceguiheadlesshelperHSV visualisationimage processImageJintensitymaskmavenmeasurementMHTmicroscopymonitoringmorphologymultiple hypothesis trackingnon rigid registrationoperatoroptimizationotsupluginpoint-spread functionprojectionprotocolPSFpythonregistrationreleaseRipley's K functionroiscriptscriptingsegmentationsequencesmoothingspatial distributionspotspot countstatisticssurfacesyntheticthresholdtoolboxtoolstrack processortrackingtutorialwarpingwavelet transformwaveletswidefieldworkbookXLS output
in Category: microscopy [2]
  • Plugin Script Protocol FAQ Forum Topic Article
  • 3-D
  • 3D
  • 3D coordinates
  • alignment
  • basics
  • batch processing
  • Calcium
  • cell tracking
  • CLEM
  • colocalization
  • comptage
  • confocal
  • connected components
  • contribution
  • convolution
  • correlation
  • deconvolution
  • deformable registration
  • denoising
  • detection
  • detector
  • developer
  • displacements
  • distance map
  • export
  • ezplug
  • feature detection
  • feature matching
  • filtering
  • fluorescence
  • gui
  • headless
  • helper
  • HSV visualisation
  • image process
  • ImageJ
  • intensity
  • mask
  • maven
  • measurement
  • MHT
  • microscopy
  • monitoring
  • morphology
  • multiple hypothesis tracking
  • non rigid registration
  • operator
  • optimization
  • otsu
  • plugin
  • point-spread function
  • projection
  • protocol
  • PSF
  • python
  • registration
  • release
  • Ripley's K function
  • roi
  • script
  • scripting
  • segmentation
  • sequence
  • smoothing
  • spatial distribution
  • spot
  • spot count
  • statistics
  • surface
  • synthetic
  • threshold
  • toolbox
  • tools
  • track processor
  • tracking
  • tutorial
  • warping
  • wavelet transform
  • wavelets
  • widefield
  • workbook
  • XLS output
P1 – Detect tissue mimics and crop 3D sub-volume
DeltaT
var total_items = 2;

Substructure Analyzer

protocol
Isabelle Behm-Ansmant

The Substructure Analyzer workflow allows automatic analysis of fluorescent signals in cellular compartments and measurement of different features s [..]

Cell Fluorescence Quantification

protocol
Stéphane Rigaud
Jessica Quintin
Stéphane Rigaud
Jessica Quintin

Protocol for automatically segmenting cell and quantifying their area and intensity, under fluorescence binocular in batch process. This protocole was [..]

Welcome

Welcome to the Icy community support.

View Forum

Google Group

We’re migrating to a new Forum ⚡️, but if you need to access the old Google Group, please follow this link. All new topics should be opened here from now.

Latest Articles

  • Creating an Icy plugin with EzPlug
  • Creating blocks for Icy protocols
  • Installation instructions for Icy software
  • Code of Conduct
  • Icy cheat sheets
Icy is founded by
Institut Pasteur
France BioImaging
Resources
Plugins Protocols Scripts
Get Involved
Contributors Information Trainings Join Icy
Support
Forum Articles FAQ Ask for help
About
Aknowledgements Bioimage Analysis Contributors Privacy Policy
Credits
Designed by Yhello
contact
Yhello is a digital creation agency based in Paris, created by former scientists passionate about the web.
We use cookies on our website to give you the most relevant experience by remembering your preferences and repeat visits. By clicking “Accept All”, you consent to the use of ALL the cookies. However, you may visit "Cookie Settings" to provide a controlled consent.
Cookie SettingsAccept All
Manage consent

Privacy Overview

This website uses cookies to improve your experience while you navigate through the website. Out of these, the cookies that are categorized as necessary are stored on your browser as they are essential for the working of basic functionalities of the website. We also use third-party cookies that help us analyze and understand how you use this website. These cookies will be stored in your browser only with your consent. You also have the option to opt-out of these cookies. But opting out of some of these cookies may affect your browsing experience.
Necessary
Always Enabled
Necessary cookies are absolutely essential for the website to function properly. These cookies ensure basic functionalities and security features of the website, anonymously.
CookieDurationDescription
cookielawinfo-checkbox-analytics11 monthsThis cookie is set by GDPR Cookie Consent plugin. The cookie is used to store the user consent for the cookies in the category "Analytics".
cookielawinfo-checkbox-functional11 monthsThe cookie is set by GDPR cookie consent to record the user consent for the cookies in the category "Functional".
cookielawinfo-checkbox-necessary11 monthsThis cookie is set by GDPR Cookie Consent plugin. The cookies is used to store the user consent for the cookies in the category "Necessary".
cookielawinfo-checkbox-others11 monthsThis cookie is set by GDPR Cookie Consent plugin. The cookie is used to store the user consent for the cookies in the category "Other.
cookielawinfo-checkbox-performance11 monthsThis cookie is set by GDPR Cookie Consent plugin. The cookie is used to store the user consent for the cookies in the category "Performance".
viewed_cookie_policy11 monthsThe cookie is set by the GDPR Cookie Consent plugin and is used to store whether or not user has consented to the use of cookies. It does not store any personal data.
Functional
Functional cookies help to perform certain functionalities like sharing the content of the website on social media platforms, collect feedbacks, and other third-party features.
Performance
Performance cookies are used to understand and analyze the key performance indexes of the website which helps in delivering a better user experience for the visitors.
Analytics
Analytical cookies are used to understand how visitors interact with the website. These cookies help provide information on metrics the number of visitors, bounce rate, traffic source, etc.
Advertisement
Advertisement cookies are used to provide visitors with relevant ads and marketing campaigns. These cookies track visitors across websites and collect information to provide customized ads.
Others
Other uncategorized cookies are those that are being analyzed and have not been classified into a category as yet.
SAVE & ACCEPT