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3-D3D3D coordinatesalignmentbasicsbatch processingCalciumcell trackingCLEMcolocalizationcomptageconfocalconnected componentscontributionconvolutioncorrelationdeconvolutiondeformable registrationdenoisingdetectiondetectordeveloperdisplacementsdistance mapexportezplugfeature detectionfeature matchingfilteringfluorescenceguiheadlesshelperHSV visualisationimage processImageJintensitymaskmavenmeasurementMHTmicroscopymonitoringmorphologymultiple hypothesis trackingnon rigid registrationoperatoroptimizationotsupluginpoint-spread functionprojectionprotocolPSFpythonregistrationreleaseRipley's K functionroiscriptscriptingsegmentationsequencesmoothingspatial distributionspotspot countstatisticssurfacesyntheticthresholdtoolboxtoolstrack processortrackingtutorialwarpingwavelet transformwaveletswidefieldworkbookXLS output
in Category: multiple hypothesis tracking [3]
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Cells detection and tracking with Active Contour
Batch spots detections and statistics
var total_items = 3;

Detection (with cluster un-mixing) and tracking of neurons with EMC2

protocol
Thibault Lagache

This protocol 1- detects bright spots (neurons) with Wavelet spot detector 2- un-mix (i.e. detects individual spots in large clusters) with Laplacian [..]

Detection and Tracking of neurons with EMC2

protocol
Thibault Lagache

This protocol is designed to track neurons in calcium imaging of behaving animal. It contains a step of spot detection (wavelet Spot detector), follow [..]

Elastic motion correction and concatenation (EMC2) of tracks

plugin
Thibault Lagache

EMC2 plugin & block(s) is designed for closing tracking gaps in single-particle tracking. It is particularly well-suited for monitoring single neu [..]

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