This protocol is designed to track neurons in calcium imaging of behaving animal.
It contains a step of spot detection (wavelet Spot detector), followed by Bayesian tracking (eMHT Spot tracking) and gap closing (EMC2 block).
Institution: Institut Pasteur
Website: https://research.pasteur.fr/fr/team/bioimage-analysis/preprint: https://www.biorxiv.org/content/10.1101/2020.06.22.165696v1.abstract
Please refer to the documentation of
Spot detector https://icy.bioimageanalysis.org/plugin/spot-detector/
Spot tracking https://icy.bioimageanalysis.org/plugin/spot-tracking/
for more details