Icytomine batch plugins contains blocks: - Create Cytomine client - Get Cytomine annotation - Get Cytomine image - [..]
Icytomine Client contains: - Project Explorer - Image Viewer
Bin data along the time and z dimensions.
DeepClas4BioIcyKvasir is an Icy plugin that allows users to classify a batch of images using a model trained in the Kvas [..]
This plugin library offers vars useful when working with Protocols. Examples are: - VarDimension: allows to specify an [..]
This plugin library offers different block plugins to generate random objects. Among them: - Random integers - Random [..]
QuantEv (track processor) allows to visualize and quantitatively compare the spatio-temporal distribution of track featu [..]
Collection of plugin for Fourier optic
Image denoising based on fusing multiple Compressed Sensing (CS) reconstructions, taking advantage of the robustness of [..]
SURF Feature Matching
Alternative to the default bioformat tif saving: simply convert the image to ImageJ and use the faster IJ saving. Save the metadata in the icy xml.
This plugin computes on a full image or on a set of ROIs (cell by cell for example) the coefficient of Pearson between t [..]
This plugin will compute the intensity profil of ROI contour along Z (3D) and T (timelaps) dimension. It generates a wor [..]
TubeSkinner is a dimensionality reduction tool, that maps the fluorescence intensity over a 3D tubular structure onto a [..]
This project contains plugins necessary to read and write large 2D images. The plugins available for this library are: L [..]
DeepClas4BioIcy is a plugin that connects Icy with DeepClas4Bio API -- an API that facilitates the interoperability of b [..]
This plugin allows to stitch together all the fields of a well placed in a well plate. This process can be applied to ju [..]
This block draw color crosses from arrays of 2D localizations. It is particularly useful for data mapping and visualization of STORM images.
This block imports localizations (x,y,z) and nb of photons from excel files. Outputs are arrays of doubles.
Ensemble of blocks that implement SODA method for confocal and super-resolution microscopy, in 2 and 3 dimensions
Library classes used by FPBioimage for upload to AWS
This block generate a black Icy sequence with desired dimensions.
This block implements the DBSCAN algorithm in 2D and 3D.
This protocol’s block draws 3D spheres with VTK from a list of cartesian coordinates (x,y,z). It is used by SODA-STORM [..]
This plugin aims at simulating 2D time-lapse Total Internal Reflection Fluorescence (TIRF) microscope images of endocytosis.
Creates a chessboard image from two given images with same size. The size of the chessboard tile can be adjusted with the square size parameter
Flip any sequence (different from a 180 degres rotation). Also available as a block in protocols
Yes, it is finally here. A user-friendly interface to Docker, letting you run containers within your plug-ins in no time.
This plugin starts from a sequence (2D, 3D, time..) with several channels, (as obtained using the Merge Channel tool) [..]
Interface for the protocol used to analyse the datasets from the 2015 Cel Tracking Challenge