Thomas Provoost

This script shows how to use the Math Operation on two sequences, with a more advanced formula.

Batch process on a folder, using a K-Means algorithm for thresholding.

Usable on global view of a 96-Well Plates. It creates a grid of oval ROIs on the sequence and computes the mean intensity.

Removes a channel from the sequence. See also Extract Channel.

Generates various ROIs and add them to the current sequence. Shows the use of points in scripting: Point2D.

Perform a snapshot and save the result into the selected file.

Computes if a point is inside an ROI or not.

Creates a Dialog behaving like ImageJ macros'.

This script snaps an image with Micro-Manager.

Shows the different manners to create and access an Array in JavaScript.

This script shows how to resolve an Ambiguous error raised by JavaScript.

Performs a threshold on the first channel of the image via the Otsu method, from BestThreshold plugin.

Example on how to use the Math Operations Plugin in scripts.

This script creates a sequence with channel 0 and a new black channel. Combined with the painting plugin, the black chan [..]

Creates a grid of 100x100 Rectangular ROIs on a sequence.

Auto Thresholder using KMeans method. Based on Thresholder plugin.

Sometimes, images metadata contains the same name, and thus are confusing for the user (two very different sequences wit [..]

Displays the value of the angles along a polyline ROI.

Save the current sequence to the file selected by the user with a File Dialog.

Displays a File Selection Dialog to choose multiple images and open them either as one or multiple sequences.

Displays a File Selection Dialog to choose an image and open it as a sequence.

Changes infos about pixel size and time interval on a sequence.

Get an image from the current sequence. Add an image, then remove it.

Get the selected ROI on the sequence.

On a sequence with multiple ROIs, get the ROI of a specified index.

Creates a sequence with 100 time points, name it, and add it to the GUI.

Creates a sequence with 100 slices.

Generates a sequence and add it to the GUI. See also "Generate Image" script.

Generates a rectangular ROI and add it to the current sequence. Shows the use of points in scripting: Point2D.

Generates a polygonal ROI (5 points) and add it to the current sequence. Shows the use of points in scripting: Point2D.

Generate an image with specified width,height, number of channels and type.

Duplicates an image, to avoid altering data.

Convert an image from a type to another.

Convert a sequence from a type to another.

This resource has no description yet.

Converts sequence slices to time points.

Converts a sequence time points to slices.

Extracts channel 0 and 2 from a sequence and combine them.

Call a full macro from the script, and conversions between Icy and IJ.

Call an ImageJ Plugin from the Script.

Access pixel size and time interval on the sequence.

Access sequence width / height / channels / slices / time points.

Inversion of an ROI in python.

Extract a single channel.