Thibault Lagache

This track processor is specifically designed for 2-color imaging of endocytosis at the cell membrane. It determines the [..]

This block draw color crosses from arrays of 2D localizations. It is particularly useful for data mapping and visualization of STORM images.

This block imports localizations (x,y,z) and nb of photons from excel files. Outputs are arrays of doubles.

Ensemble of blocks that implement SODA method for confocal and super-resolution microscopy, in 2 and 3 dimensions

This block generate a black Icy sequence with desired dimensions.

This block implements the DBSCAN algorithm in 2D and 3D.

This protocol’s block draws 3D spheres with VTK from a list of cartesian coordinates (x,y,z). It is used by SODA-STORM [..]

This plugin aims at simulating 2D time-lapse Total Internal Reflection Fluorescence (TIRF) microscope images of endocytosis.

Tracking plugin specifically designed for tracking of endocytosis/exocytosis in TIRF microscopy

This plugin computes the Manders coefficients between ROIs in 2 sequences (Intensity and surface coefficients). A p valu [..]

Create two synthetic sequences with given numbers of spots and colocalization properties (percentage, distance mean and standard deviation)

This plugin contains most of existing colocalization methods in 2D and 3D fluorescence microscopy images: Pearson and Ma [..]

This block can be used to filter ROIs as function of their circularity 2*pi*area/(perimeter^2). The output ROIs are the [..]

Input = Rois and Detections (viewed as ROIs) Output= Rois that contain at least one Detection and the Detections that are in at least one of the Rois

This block plugin compute the intersection between the union of Rois 1 and the union of Rois 2: (union Rois 1) inter (union Rois 2)

This plugin uses the Ripley’s K function to analyze robustly the spatial organization of molecules.

This plugin measures the percentage of elongated spots in a sequence.

This plugin permit to measure the signal spread of a molecule with respect to the cell area.

This plugins allows debleaching of time sequences of fluorescence images.