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Convert frame – time to channel example
Cells detection and tracking with Active Contour
var total_items = 6;

Leaf area counter

protocol
Giordano Basili Luciani

this protocols allow to calculate internal leaf area. first of all, the destination excel file need to be create in order to save results, than the la [..]

Creating blocks for Icy protocols

post
Amandine Tournay

The plugin Protocols provide a graphical environment that enables anyone to create graphically and without any prior knowledge in programming a bioimage analysis workflow, and automate it on many images (batch processing). Protocols can also contain blocks with custom scripts and be run from the command line, which makes it a very powerful tool in […]

How to publish a protocol

post
Marion Louveaux

In Icy, “protocols” are bioimage analysis workflows written with a graphical programming language. Here, I detail how to publish and share a protocol on the Icy website. The procedure in three steps You can upload a protocol on the Icy website following these three steps: Create an account for each author of the protocol. Please […]

Elastic motion correction and concatenation (EMC2) of tracks

plugin
Thibault Lagache

EMC2 plugin & block(s) is designed for closing tracking gaps in single-particle tracking. It is particularly well-suited for monitoring single neu [..]

Rainbow Spot detector scale finder

protocol
IcyLyd

This protocol helps you to find the right scale sensitivity  when using the spot detector plugin, to get the most adapted segmentation.   [..]

Protocols

plugin
Alexandre Dufour
Stephane Dallongeville
Alexandre Dufour
Stephane Dallongeville

Design your own bioimage analysis workflow, graphically, and automate it on many images (batch processing). No programming knowledge required! Protoc [..]

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