Daniel Felipe González Obando

A simple library to use YAML files.

This plugin assigns random colors to ROIs.

A Polygon clipper for Java Polygon Clipper is a library to execute various boolean operations (Union, Difference, XOR, e [..]

The Gson library packaged for Icy. A library to read and write Json files

Enable the tensor flow API to use trained deep learning models. With this plugin you can choose which version of the lib [..]

The Apache Commons CSV library Commons CSV is a library dedicated to reading/writing files in variations of the Comma Se [..]

This plugin is deprecated, it is already included in the Icytomine client. DO NOT INSTALL THIS PLUGIN Icytomine batch pl [..]

Cytomine Client This plugins are compatible with Cytomine version 1 servers , NOT version 2 servers. Available plugins: [..]

This plugin library offers vars useful when working with Protocols. Examples are: – VarDimension: allows to specif [..]

This plugin library offers different block plugins to generate random objects. Among them: – Random integers ̵ [..]

SURF Feature Matching

This project contains plugins necessary to read and write large 2D images. The plugins available for this library are: L [..]

This plugin allows to stitch together all the fields of a well placed in a well plate. This process can be applied to ju [..]

Well plate support for Icy, with an interactive well plate viewer and batch processing capabilities within Protocols

Parallel implementation for active contours

Thresholding filter using hysteresis principle

This plugin performs a laplacian of Gaussian filter in 3D. This can be useful to enhance blobs of sizes specified by the parameter sigma.

Set of block (for graphical programming with Protocols) to perform different operations on ROI (Region Of Interest).

Computes fast quasi-exact euclidean distance transforms in 2D/3D from a set of regions of interest.

Create powerful scripts to implement what’s missing with plugins. Syntax Color and Autocomplete features implement [..]

Plots an intensity profile of a given ROI.

Can plot mean over T or/and Z too.

This plugin allows one to use various basic sequence operations within Blocks.

Fast Fourier Transform (FFT) for 2D/3D images

Provides a selection of spatial, separable and customizable filters in 1D and 2D, with OpenCL implementation if supported.

Automatically segment the boundary of a nucleus or cell starting from an approximate ROI. It supports 2D and 3D processi [..]

Morphomath operators: erosion, dilation, opening, closing, top-hat, gradient, distance map, skeleton and watershed